View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_high_21 (Length: 389)
Name: NF17198_high_21
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 30723230 - 30723592
Alignment:
| Q |
14 |
atcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaaacgatggatagatt |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723230 |
atcagcaatctacctgattcacttataacttacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaaacgatggatagatt |
30723329 |
T |
|
| Q |
114 |
gttggactttcgtcaccaaggtgaacttagatgattgtgtgttctttaaacacaagaagaagaaatcaggtggaaaacggtactttataaactttgtcaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723330 |
gttggactttcgtcaccaaggtgaacttagatgatagtatgttctttaaacacaagaagaagaaatcaggtggaaaacggtactttataaactttgtcaa |
30723429 |
T |
|
| Q |
214 |
tagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatggatctctggc |
313 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723430 |
tagagcacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatggatctctggc |
30723529 |
T |
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| Q |
314 |
atcttgaaacgaaatgtaaaaaagctttctatcactacatatttagagctacccttctctgct |
376 |
Q |
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| T |
30723530 |
atcttgaaacgaaatgtaaaaaagctttctatcactacatatttagagctacccttctctgct |
30723592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 30715535 - 30715807
Alignment:
| Q |
14 |
atcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaaacgatggatagatt |
113 |
Q |
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| T |
30715535 |
atcagcaagctaccctattcacttagatctcgcattctctcatttctcccgacaaaagatgctgctcgtacgagtgtgttatcaagaagttggacagaaa |
30715634 |
T |
|
| Q |
114 |
gttggactttcgtcaccaaggtgaacttagatgattgtgtgttc--tttaaacacaag-aagaagaaatcaggtggaaaacggtactttataaactttgt |
210 |
Q |
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| T |
30715635 |
gctggacatcaatcaccaagttggacttagatgatagtgtgttccattctcccaaaagtaagaaaaaatcaggtggaaaacaacactttataaactttgt |
30715734 |
T |
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| Q |
211 |
caatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgat |
283 |
Q |
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| T |
30715735 |
caatagagcacttctgcttaatgagaattatagtgtggaatgtttttctcttgtgatcactaataagtatgat |
30715807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 9678534 - 9678650
Alignment:
| Q |
206 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
305 |
Q |
| |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
9678534 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
9678633 |
T |
|
| Q |
306 |
tctctggcatcttgaaa |
322 |
Q |
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||||| |||| |||||| |
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| T |
9678634 |
tctcttgcatgttgaaa |
9678650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 13543478 - 13543594
Alignment:
| Q |
206 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttcccttctaaatacatgga |
305 |
Q |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| | || ||||||| |||||||| |
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| T |
13543478 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatgacctatctcttctaagtacatgga |
13543577 |
T |
|
| Q |
306 |
tctctggcatcttgaaa |
322 |
Q |
| |
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||||| |||| |||||| |
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| T |
13543578 |
tctcttgcatgttgaaa |
13543594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 11360363 - 11360278
Alignment:
| Q |
14 |
atcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaa |
99 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| | |||||| | ||||| ||||| || | |||||||||||| |||||||| |
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| T |
11360363 |
atcagtaatctacctgattcacttataactcacattatatcttgtcttcctacaaaagatgcagttcgtacaagtgtcttatctaa |
11360278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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