View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17198_high_22 (Length: 388)
Name: NF17198_high_22
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 2486661 - 2486878
Alignment:
| Q |
10 |
attattcttatcattattgtgcatgagggactataaatcctctccttcaagttcaaggattcataattattggtgaaaaatatcatcattgactttgtgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2486661 |
attattcttatcattattgtgcatgagggactataaatcctctccttcaagttcaacgattcataattattggtgaaaaatctcatcattgactttgtgt |
2486760 |
T |
|
| Q |
110 |
gaatacaatacaaccttaagtgtatagggtgagttctttgctctctattttgtttgtcttcttttggtagttgaaaagaacattgactaattaaccaatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486761 |
gaatacaatacaaccttaagtgtatagggtgagttctttgctctctattttgtttgtcttcttttggtagttgaaaagaacattgactaattaaccaatt |
2486860 |
T |
|
| Q |
210 |
caattccactattctcaa |
227 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
2486861 |
caattccactattttcaa |
2486878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 222 - 372
Target Start/End: Original strand, 2486899 - 2487049
Alignment:
| Q |
222 |
tctcaaagtaattaacttttatacatgcctttttgattagtaatgattctacaattttattctcttaattaacttgcttaccaagtaaaatataaaacat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486899 |
tctcaaagtaattaacttttatacatgcctttttgattagtaatgattctacaattttattctcttaattaacttgcttaccaagtaaaatataaaacat |
2486998 |
T |
|
| Q |
322 |
ccaatcaaattttgctactctcttaactattctgtgtattttaaggttatt |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2486999 |
ccaatcaaattttgctactctcttaactattctgtgtattttaaggttatt |
2487049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University