View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_high_27 (Length: 350)
Name: NF17198_high_27
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 27070238 - 27069910
Alignment:
| Q |
11 |
cacagaagcaacaacacatcctaactaaaaaagcataccagctagcactaaacaacctatcccatctaacatgttactaattaacatattccaagataat |
110 |
Q |
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| T |
27070238 |
cacagaagcaacaacacatcctaactacaaaagcacaccagctagcactaaacaacccatcccatctaacatgttgctaattaacatattccaacataat |
27070139 |
T |
|
| Q |
111 |
ttaaaacatccacac-----acttgcttgagccaaacagcgaaacaacaaacttctagctaaaaccgaaaccaaaaataagaatacctcaacgtcatagt |
205 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
27070138 |
ttaaaacatccacaccacacacttgcttgagccaaacagcaaaacagcaagcttctagctgaaaccgaaaccaaaaataagaataccccaacgtcatagt |
27070039 |
T |
|
| Q |
206 |
gaaactccaccttctgcacctaaaactggctaacaacaaacttcaacacaaaaccaaaaaaccagcagccagagaatccaaccgcaccacctcgccaaaa |
305 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
27070038 |
gaaactccaccttctgcacctaaaaccggctagcaacaaacctcaacacaaaaccaaaaaaccagcagccggacgatccaaccgcaccacctcgccaaaa |
27069939 |
T |
|
| Q |
306 |
ggaataccgccgcataactatgctaaaat |
334 |
Q |
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||||||||||||||||| ||||||||||| |
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| T |
27069938 |
ggaataccgccgcataattatgctaaaat |
27069910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 27150324 - 27149996
Alignment:
| Q |
11 |
cacagaagcaacaacacatcctaactaaaaaagcataccagctagcactaaacaacctatcccatctaacatgttactaattaacatattccaagataat |
110 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
27150324 |
cacagaagcaacaacacatcctaactacaaaagcacaccagctagcactaaacaacccatcccatctaacatgttgctaattaacatattccaacataat |
27150225 |
T |
|
| Q |
111 |
ttaaaacatccacac-----acttgcttgagccaaacagcgaaacaacaaacttctagctaaaaccgaaaccaaaaataagaatacctcaacgtcatagt |
205 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
27150224 |
ttaaaacatccacaccacacacttgcttgagccaaacagcaaaacagcaagcttctagctgaaaccgaaaccaaaaataagaataccccaacgtcatagt |
27150125 |
T |
|
| Q |
206 |
gaaactccaccttctgcacctaaaactggctaacaacaaacttcaacacaaaaccaaaaaaccagcagccagagaatccaaccgcaccacctcgccaaaa |
305 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
27150124 |
gaaactccaccttctgcacctaaaaccggctagcaacaaacctcaacacaaaaccaaaaaaccagcagccggacgatccaaccgcaccacctcgccaaaa |
27150025 |
T |
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| Q |
306 |
ggaataccgccgcataactatgctaaaat |
334 |
Q |
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||||||||||||||||| ||||||||||| |
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| T |
27150024 |
ggaataccgccgcataattatgctaaaat |
27149996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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