View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_high_30 (Length: 324)
Name: NF17198_high_30
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 3746757 - 3746444
Alignment:
| Q |
21 |
ggtaggattactatgtcattcgtaataactgtcattagtaatgaaaatgatggtagtatcaagagagtgtgaaattcacaataaaatatcaatgaatagt |
120 |
Q |
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| T |
3746757 |
ggtagtattactatgtcattcgtaataactgtcattagtaatgaaaatgatggtagtatcaagagagtgtgaaattcacaataaaatatcaatgaatagt |
3746658 |
T |
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| Q |
121 |
gttggacagctaaatgatttggatgcaagatagtagatggattaatacctgaaatg------cttggacagttaaatgatg----tatacttaatgtgat |
210 |
Q |
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| T |
3746657 |
gttggacagctaaatgatttggatgcaagatagtagatggattaatacctgaaatgcttcgacttggacagttaaatgatgtctatatacttaatgtgat |
3746558 |
T |
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| Q |
211 |
aggttggtgatatgataagaagatagagatagagagaaaatgaagtgttaaatagtgttgtcttctaagtttaactcggttggtagctaccagagatatt |
310 |
Q |
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| T |
3746557 |
aggttggtgatatgataagaagatagagatagagagaaaatgaagtgttaaatagtgttgtcttgtaagtttagctcggttggtagctaccagagatatt |
3746458 |
T |
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| Q |
311 |
atgtgtaggggtga |
324 |
Q |
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| T |
3746457 |
atgtgtaggggtga |
3746444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 4123214 - 4123160
Alignment:
| Q |
207 |
tgataggttggtgatatgataagaagatagagatagagagaaaatgaagtgttaaat |
263 |
Q |
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| T |
4123214 |
tgatatgttggtgatgtgataggaaga--gagataaagagaaaatgaagtgttaaat |
4123160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 207 - 264
Target Start/End: Original strand, 7566381 - 7566438
Alignment:
| Q |
207 |
tgataggttggtgatatgataagaagatagagatagagagaaaatgaagtgttaaata |
264 |
Q |
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| T |
7566381 |
tgataggttgatgatatgataggaagagagagatagagagaaaatgaagtgttaaata |
7566438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 322
Target Start/End: Complemental strand, 9737669 - 9737636
Alignment:
| Q |
289 |
gttggtagctaccagagatattatgtgtaggggt |
322 |
Q |
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| T |
9737669 |
gttggtagctaccagagatattatgtgcaggggt |
9737636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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