View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_high_33 (Length: 313)
Name: NF17198_high_33
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 4871937 - 4872223
Alignment:
| Q |
11 |
ttatacttgtgatccattcatagacatgcctcctcttcctcgtcctccttgttactataaatgggtgaaggaaacaatagcttatatcaattctgctact |
110 |
Q |
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| T |
4871937 |
ttatacttgtgatccattcatagacatgcctcctcttcctcgtcctccttgttactataaatgggtgaaggaaacaatagcttatatcaattctgctact |
4872036 |
T |
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| Q |
111 |
cgtgatttcgatgacatgctctctcgcggttactctaccatatccgattatatcgctcttttttcttcccttcttaatatccatcaacacagcactgttc |
210 |
Q |
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| T |
4872037 |
cgtgatttcgatgacatgctctctcgcggttactctaccatatccgattataacgctcttttttcttcccttcttaatatccatcaacacagcactgttc |
4872136 |
T |
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| Q |
211 |
ttagacttgctaaacaatttgaatcgcaaaaccctaaccttcatcctgttacaccggacattaatacttggttaatcttcatctctt |
297 |
Q |
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| T |
4872137 |
ttagacttgctaaacaatttgaatcgcaagaccctaaccttcatcctgttacaccggacattaatacttggttaatcctcatctctt |
4872223 |
T |
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