View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17198_high_34 (Length: 311)
Name: NF17198_high_34
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_34 |
 |  |
|
| [»] chr1 (12 HSPs) |
 |  |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 18434270 - 18434559
Alignment:
| Q |
22 |
tgatattcattcaaatatatggttcgagttaaaataattaccaaccgatgcatcaattcatcattgcttcaacttattttgaacaaatgtttctgctatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
18434270 |
tgatattcattcaaatatatggttcgagttaaaataattaccaagtgaggcatcaattcatcattttttcaacatattttgaacaaatgtttctgctatc |
18434369 |
T |
 |
| Q |
122 |
atgacaagtcttagaatttgggcttataactaggagtgtgtacggattgacttatttgagcttatctactaacataaattgtttgggaggacttatggaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||| || |
|
|
| T |
18434370 |
atgacaagtcttagaatttgggcttataactaggagtgtgtacgcatagacttatttgagcttatctattaacataaactgtttgggaggacttatgaaa |
18434469 |
T |
 |
| Q |
222 |
acgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttatatgag |
311 |
Q |
| |
|
| |||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18434470 |
atgatttatgacctgtttataaactgttctcaacttatttttgtaagctctccaggataacttgtgaaaatagcatatagcttatatgag |
18434559 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 306
Target Start/End: Original strand, 18402988 - 18403272
Alignment:
| Q |
22 |
tgatattcattcaaatatatggttcgagttaaaataattaccaaccgatgcatcaattcatcattgcttcaacttattttgaacaaatgtttctgctatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | |||||| ||| |
|
|
| T |
18402988 |
tgatattcattcaaatatatggttcgagttaaaataattaccaagtgaggcatcaattcatcattgcttcaacttattttgaacaattaattctgccatc |
18403087 |
T |
 |
| Q |
122 |
atgacaagtcttagaatttgggcttataactaggagtgtgtacggattgacttatttgagcttatctactaacataaattgtttgggaggacttatggaa |
221 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||| || | ||||||||||||||||||||| ||||| ||| || ||||||||| ||||||||| |
|
|
| T |
18403088 |
atgacaaatcttagaatttgggcttaaaactaggagcgtatttggattgacttatttgagcttacctactgtcattaactgtttgggatagcttatggaa |
18403187 |
T |
 |
| Q |
222 |
acgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttat |
306 |
Q |
| |
|
|| |||| ||||||||||||||| ||||||||||||||||||| |||||||| || ||| || | ||||||||||||||||||| |
|
|
| T |
18403188 |
acaatttgtgacatgtttataaattgttctcaacttatttttgtaagctctccagaatagctcatgaaaatagcatatagcttat |
18403272 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 18420801 - 18420935
Alignment:
| Q |
177 |
ttgagcttatctactaacataaattgtttgggaggacttatggaaacgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgag |
276 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
18420801 |
ttgagcttatctactaacatactctgtttgggaggacttatggaaacgatttatgacatgtttataaagtgttctcaacttatttttgtaagctctccaa |
18420900 |
T |
 |
| Q |
277 |
gataacttgtaaaaatagcatatagcttatatgag |
311 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
18420901 |
gataacttgtgaaaatagcatatagcttatatgag |
18420935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 41505820 - 41505762
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataaattgtttgggaggacttatggaaac |
223 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| ||||||||||| ||||||| |||| |
|
|
| T |
41505820 |
ggattggcttatttgagcttatctactgacataagttgtttgggagaacttatgaaaac |
41505762 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 10199332 - 10199365
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10199332 |
ggattgacttatttgagcttatctactaacataa |
10199365 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 16793441 - 16793362
Alignment:
| Q |
228 |
tatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttatat |
308 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||||| | ||||||||| || ||||| ||| |||||||| |||||||||||| |
|
|
| T |
16793441 |
tatgacatgtccataaattgtt-tcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatat |
16793362 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 50644179 - 50644211
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacata |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50644179 |
ggattgacttatttgagcttatctactaacata |
50644211 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 6292638 - 6292605
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
6292638 |
ggattgacttatttgagcttatctactgacataa |
6292605 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 15784463 - 15784430
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
15784463 |
ggatcgacttatttgagcttatctactaacataa |
15784430 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 29793624 - 29793656
Alignment:
| Q |
167 |
attgacttatttgagcttatctactaacataaa |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
29793624 |
attgacttatttgagcttatctactgacataaa |
29793656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 42575393 - 42575429
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataaatt |
201 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
42575393 |
ggattgccttatttgagcttatctactagcataaatt |
42575429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 44422733 - 44422689
Alignment:
| Q |
266 |
aagctctcgaggataacttgtaaaaatagcatatagcttatatga |
310 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
44422733 |
aagctctccaggatagcttataaaaatagcttatagcttatatga |
44422689 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 18179095 - 18179062
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18179095 |
ggattgacttatttgagcttatctactaacataa |
18179062 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 30990363 - 30990396
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
30990363 |
ggattggcttatttgagcttatctactaacataa |
30990396 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 31561666 - 31561699
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
31561666 |
ggattgacttatttgagattatctactaacataa |
31561699 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 680576 - 680496
Alignment:
| Q |
227 |
ttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttata |
307 |
Q |
| |
|
|||||||||||||||||| |||| ||| |||||||| |||| ||| | |||| ||| | |||||||| ||||||||||| |
|
|
| T |
680576 |
ttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttata |
680496 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 2416458 - 2416426
Alignment:
| Q |
166 |
gattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
2416458 |
gattgacttatttgagtttatctactaacataa |
2416426 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 7674736 - 7674686
Alignment:
| Q |
212 |
acttatggaaacgatttatgacatgtttataaagtgttctcaacttatttt |
262 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
7674736 |
acttatggaaacaacttatgacatgtttataaggtgttttcagcttatttt |
7674686 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 11615578 - 11615612
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataaa |
199 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
11615578 |
ggattggcttatttgagcttatctactaacataaa |
11615612 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 310
Target Start/End: Original strand, 38766516 - 38766625
Alignment:
| Q |
201 |
tgtttgggaggacttatggaaacgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatata |
300 |
Q |
| |
|
||||||| || |||||||||||| | |||||||| || |||| |||| || ||||||||| |||| |||||| |||||||| ||||||| |||| |
|
|
| T |
38766516 |
tgtttggaagaacttatggaaacaacttatgacacgtccataagttgttttcgacttattttcaaaagccttcgaggttaacttgtgaaaatagtttata |
38766615 |
T |
 |
| Q |
301 |
gcttatatga |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
38766616 |
gcttatatga |
38766625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 41419465 - 41419429
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataaatt |
201 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
41419465 |
ggattgacttatttgagctaatctactgacataaatt |
41419429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 41534584 - 41534548
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataaatt |
201 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
41534584 |
ggattgacttatttgagctaatctactgacataaatt |
41534548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 18331860 - 18331827
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
18331860 |
ggattgacttatttgatcttatctactaacataa |
18331827 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 35534541 - 35534570
Alignment:
| Q |
169 |
tgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35534541 |
tgacttatttgagcttatctactaacataa |
35534570 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 38602473 - 38602440
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
38602473 |
ggattgacttatttgagcttatctactgacataa |
38602440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 43368624 - 43368657
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
43368624 |
ggattgacttatttgatcttatctactaacataa |
43368657 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 8427159 - 8427126
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
8427159 |
ggattgatttatttgagcttatctactaacataa |
8427126 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 24976022 - 24975989
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
24976022 |
ggattgactaatttgagcttatctactaacataa |
24975989 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 25833454 - 25833421
Alignment:
| Q |
166 |
gattgacttatttgagcttatctactaacataaa |
199 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
25833454 |
gattgacttatttgaacttatctactaacataaa |
25833421 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 40598400 - 40598436
Alignment:
| Q |
156 |
agtgtgtacggattgacttatttgagcttatctacta |
192 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40598400 |
agtgtgtttggattgacttatttgagcttatctacta |
40598436 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 12111113 - 12111080
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
12111113 |
ggattgacttatttgagcttatctactagcataa |
12111080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 30784688 - 30784655
Alignment:
| Q |
166 |
gattgacttatttgagcttatctactaacataaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
30784688 |
gattgacttatttgagcttatctactatcataaa |
30784655 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 31338123 - 31338090
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
31338123 |
ggattgacttatttgagcttatctactagcataa |
31338090 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 9720578 - 9720611
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
9720578 |
ggattgacttatttgagtttatctactaacataa |
9720611 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 22662175 - 22662208
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
22662175 |
ggattgacttatttgagtttatctactaacataa |
22662208 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 22666654 - 22666687
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
22666654 |
ggattgacttatttgagtttatctactaacataa |
22666687 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 27043754 - 27043787
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
27043754 |
ggattgacttatttgagcttatctactgacataa |
27043787 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 584192 - 584159
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
584192 |
ggattgacttatttgagcttatctactagcataa |
584159 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 41848641 - 41848674
Alignment:
| Q |
166 |
gattgacttatttgagcttatctactaacataaa |
199 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
41848641 |
gattgacttatttgagtttatctactaacataaa |
41848674 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 26990149 - 26990181
Alignment:
| Q |
165 |
ggattgacttatttgagcttatctactaacata |
197 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
26990149 |
ggattgacttatttgagcttatctactgacata |
26990181 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 31403504 - 31403472
Alignment:
| Q |
166 |
gattgacttatttgagcttatctactaacataa |
198 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
31403504 |
gattgacttacttgagcttatctactaacataa |
31403472 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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