View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17198_high_36 (Length: 297)
Name: NF17198_high_36
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_36 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 2126294 - 2126565
Alignment:
| Q |
8 |
tccaagaatatggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgct |
107 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
2126294 |
tccaaaaaaatggcattctggaattgatagaataactaaagaattaagctttccaatggatactggcagtgcaccagagaaacctgtatgatcaagtgct |
2126393 |
T |
|
| Q |
108 |
aacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||| | |||| |
|
|
| T |
2126394 |
aacctggtgagtgaactagactgaaactcaggcaaactaccattgagatttggattatatctcaaatccagaagttccaagtttggaagatgaaatactc |
2126493 |
T |
|
| Q |
208 |
caactggaaactctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2126494 |
caactggaaactctccatacaattcagaattgtatagagacagtgctttcaacgaagttagatttgtgagtg |
2126565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 2099013 - 2099284
Alignment:
| Q |
8 |
tccaagaatatggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgct |
107 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| || |||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||||| || |
|
|
| T |
2099013 |
tccaaaaaaatggcaatctgaaattgatagaagaattaaagaactaagcttcccaatggatactggcagtgtaccatagaaacctgtttgatcaagtcct |
2099112 |
T |
|
| Q |
108 |
aacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| | |||| |
|
|
| T |
2099113 |
aacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatctcaaatccagaagttccaagtttggaagatgaaatactc |
2099212 |
T |
|
| Q |
208 |
caactggaaactctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2099213 |
caaccggaaacgctccatacaattcagaattgtatagagatagtgctttcaacgaagttagatttgtgagtg |
2099284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 2245491 - 2245220
Alignment:
| Q |
8 |
tccaagaatatggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgct |
107 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| | |
|
|
| T |
2245491 |
tccaaaaaaatggcaatctggaattgatagaataactaaagaactaaactttccaatggatactggcagtgtaccatagaaacctgtctggccaagtagt |
2245392 |
T |
|
| Q |
108 |
aacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactc |
207 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| |||||||| | |||| |
|
|
| T |
2245391 |
aaataggtgagtgaactagattgaaactcaggcaaactaccattgagatttgaattatatcccaaatccagaagttccaagtttggaagatgaaatactc |
2245292 |
T |
|
| Q |
208 |
caactggaaactctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2245291 |
caactggaaactctccatacaattcagaattgtatagagacagtgctttcaacgaagttagatttgtgagtg |
2245220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 2066201 - 2066472
Alignment:
| Q |
8 |
tccaagaatatggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgct |
107 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2066201 |
tccaaaaaaatggcaatctggaattgttagaataactaaagaactaagctttccaatagatactggcagtgtaccagagaaacctgtctgatcaagtgct |
2066300 |
T |
|
| Q |
108 |
aacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactc |
207 |
Q |
| |
|
||| |||||||||||||||| |||||||| || ||||| |||||||||||| ||||| ||| |||||||||||||||||||||| |||||||| | |||| |
|
|
| T |
2066301 |
aacttggtgagtgaactagattgaaactcgggaaaactaccattgagatttagattaaatctcaaatccagatattccaagtttggaagatgaaatactc |
2066400 |
T |
|
| Q |
208 |
caactggaaactctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
|||| ||||| || |||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
2066401 |
caacaggaaattcaccatacaattcagaattgtgtagagatagttttttcaatgaagttagatttgcgagtg |
2066472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 2073308 - 2073579
Alignment:
| Q |
8 |
tccaagaatatggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgct |
107 |
Q |
| |
|
||||| || ||||||||||||||||| |||| || |||||||| |||| |||||||| || ||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
2073308 |
tccaaaaaaatggcaatctggaattgttagagtatctaaagaagtaagctttccaatagacactggcagtgtaccagagaaacctgtctgatcaagtcct |
2073407 |
T |
|
| Q |
108 |
aacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactc |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||| |||||||||| |||||||| | |||| |
|
|
| T |
2073408 |
aacttggtgagtgaactagactgaaactcaggtaaacttcctttgagatttggattagatctcaaatccagaacttccaagtttggaagatgaaatactc |
2073507 |
T |
|
| Q |
208 |
caactggaaactctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
|||| ||||| || |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
2073508 |
caacaggaaattcaccatacaattcagaattgtatagagacagtgctttcaatgaagttagatttgtgagtg |
2073579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 2114413 - 2114675
Alignment:
| Q |
17 |
atggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgctaacctggtg |
116 |
Q |
| |
|
|||||||| ||||| |||||| |||| |||||||||||||||| |||||||||||| ||||| |||| ||||||||| | |||||| ||| ||||| |
|
|
| T |
2114413 |
atggcaatgtggaactgataggataatcaaagaactaagatttcgaatggatactgggagtgtgccatagaaacctgttttgtcaagtagtaagttggtg |
2114512 |
T |
|
| Q |
117 |
agtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactccaactggaa |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| | || ||||||| ||||||| | ||||||||||||| |
|
|
| T |
2114513 |
agtgaactagattgaaactcaggcaaactaccattgagatttggattatatcccaaatccaaaattttcaagtttggaagatgtaatactccaactggaa |
2114612 |
T |
|
| Q |
217 |
actctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
| || ||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2114613 |
attcgccatacagctcagaattgtaaagagatagttttttcaacgaagttagatttgtgagtg |
2114675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 2138906 - 2139168
Alignment:
| Q |
17 |
atggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgctaacctggtg |
116 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||| |||||||||||| ||| ||||| |||| ||||||||||| |||||| |||| ||||| |
|
|
| T |
2138906 |
atggcaatctggaattgatagggagattaaagaaccaagccttccaatggatattgggagtgtgccatagaaacctgtcttgtcaagtagtaacttggtg |
2139005 |
T |
|
| Q |
117 |
agtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactccaactggaa |
216 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| | |||||||| |||| |
|
|
| T |
2139006 |
agtgaactagattgaaactcgggtaaacttccattgagatttggattatatctcaaatccagatattccaagtttggaagatgaaatactccaacaggaa |
2139105 |
T |
|
| Q |
217 |
actctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
| || |||||||||||||||||| ||||| |||| |||||| ||||||||||||| ||||| |
|
|
| T |
2139106 |
attcaccatacaattcagaattgtgtagagttagttttttcaatgaagttagatttgcgagtg |
2139168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 2691657 - 2691395
Alignment:
| Q |
17 |
atggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgctaacctggtg |
116 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||| | |
|
|
| T |
2691657 |
atggcaatctggaattgatagggaaattaaagaacgaagctttccaatggatactggcagtgtaccatagaaacctgtctcgtcaagtagtaaattggag |
2691558 |
T |
|
| Q |
117 |
agtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactccaactggaa |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||| ||| || ||||||| |||||||| | ||||||||||||| |
|
|
| T |
2691557 |
agtgaactagattgaaactcaggcaaactaccattgagattttgattatatctcaaatctagaactttcaagtttggaagatgaaatactccaactggaa |
2691458 |
T |
|
| Q |
217 |
actctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
| || |||||||| || |||||| ||||||||||| ||||||| || |||| ||||||||||| |
|
|
| T |
2691457 |
attcaccatacaaatccgaattgtatagagatagttctttcaatgatgttaaatttgtgagtg |
2691395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 2056905 - 2057176
Alignment:
| Q |
8 |
tccaagaatatggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgct |
107 |
Q |
| |
|
||||| || |||||||||| ||||| ||| | || |||||||||||| |||||||||||||| ||||||| ||||| |||||| || | ||||||| | |
|
|
| T |
2056905 |
tccaaaaaaatggcaatctcgaatttttaggacaattaaagaactaagctttccaatggatacaggcagtgcaccatagaaacccgtatcatcaagtagt |
2057004 |
T |
|
| Q |
108 |
aacctggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactc |
207 |
Q |
| |
|
||| ||||||||||||||| ||||| | ||| ||||| |||||||||||| |||||||||||||||||||| |||||||||| ||||| || | |||| |
|
|
| T |
2057005 |
aactgggtgagtgaactagattgaaaattaggaaaactaccattgagattttgattatatcccaaatccagaagttccaagtttggaagacgaaatactc |
2057104 |
T |
|
| Q |
208 |
caactggaaactctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
|||| ||||| || |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2057105 |
caacaggaaattcaccatacaattcagaattgtaaagagatagttttttcaacgaagttagatttgtgagtg |
2057176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 2135659 - 2135891
Alignment:
| Q |
19 |
ggcaatctggaattgatagaataactaaagaactaagatttccaatggatactggcagtgtaccattgaaacctgtctgatcaagtgctaacctggtgag |
118 |
Q |
| |
|
|||||||||||||| ||| | || ||||||||||| ||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||| |
|
|
| T |
2135659 |
ggcaatctggaattcctaggacaattaaagaactaacctttccaatggatactggtagtgtaccagagaaacctgtcccaccaagtgctaattcagtgag |
2135758 |
T |
|
| Q |
119 |
tgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactccaactggaaac |
218 |
Q |
| |
|
||||||||||| |||||||||||| || |||||||||||||||||||||| |||||| ||| |||||||||| |||||||| | |||||||||||||| |
|
|
| T |
2135759 |
tgaactagactcaaactcaggcaatctaccattgagatttggattatatctcaaatctagaagttccaagtttggaagatgaaatactccaactggaaat |
2135858 |
T |
|
| Q |
219 |
tctccatacaattcagaattgaatagagatagt |
251 |
Q |
| |
|
| |||||||||||||||||| | ||||||||| |
|
|
| T |
2135859 |
gcaccatacaattcagaattgtaaagagatagt |
2135891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 279
Target Start/End: Complemental strand, 1696429 - 1696263
Alignment:
| Q |
113 |
ggtgagtgaactagactgaaactcaggcaaacttccattgagatttggattatatcccaaatccagatattccaagtttcgaagatgacacactccaact |
212 |
Q |
| |
|
|||||||| | ||| ||||||||| ||||| || || ||||||||| | |||| || |||||||| |||| ||| || | |||||| | | ||||||| |
|
|
| T |
1696429 |
ggtgagtgcattaggctgaaactcgggcaacctacctttgagattttggttatctctcaaatccaaatatctcaatttcggtagatgaaaaattccaact |
1696330 |
T |
|
| Q |
213 |
ggaaactctccatacaattcagaattgaatagagatagtgctttcaacgaagttagatttgtgagtg |
279 |
Q |
| |
|
||||| || |||||||||||| ||||| | ||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
1696329 |
ggaaattcaccatacaattcacaattgtaaagagatagtactttcaacgaagttagatttgagagtg |
1696263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University