View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17198_high_4 (Length: 676)
Name: NF17198_high_4
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_4 |
 | |
|
| [»] chr2 (9 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 33861950 - 33861425
Alignment:
| Q |
1 |
caatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatcttttcacttgtagggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33861950 |
caatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatcttttcacttgtagggc |
33861852 |
T |
|
| Q |
101 |
attattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgtaatttcgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33861851 |
attattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgtaattgcgtt |
33861752 |
T |
|
| Q |
201 |
gagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattgcaaaagac |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33861751 |
gagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattgcaaaagac |
33861653 |
T |
|
| Q |
301 |
ttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag-----------aagtggtctatttt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33861652 |
ttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtttaagtggtctatttt |
33861553 |
T |
|
| Q |
390 |
acttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaattaatattattattcga |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
33861552 |
acttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaattaatattagtattcga |
33861453 |
T |
|
| Q |
490 |
accgcttactacatgtatattctaaaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33861452 |
accgcttactacatgtatattctaaaaa |
33861425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 33918972 - 33919497
Alignment:
| Q |
1 |
caatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgcatatggaaccatctctatatcttcttgatcttttcacttgtagggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33918972 |
caatatacggccttgtgcatgccttaacatacacaaaactatctt-gtggatgcatatggaaccatctctatatcttcttgatcttttcacttgtagggc |
33919070 |
T |
|
| Q |
101 |
attattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgtaatttcgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33919071 |
attattctgaactcaatttgaaatgactatagagtagagtactgatacatttgtattttctcatgtaaagtccataacaccttctcaatgtaattgcgtt |
33919170 |
T |
|
| Q |
201 |
gagacaaccacaattttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattgcaaaagac |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33919171 |
gagacaaccacaa-tttaccattcatattgtcacaactcacaagtaattctcatgccaaggattttctttgcataaccaaagttcttcattgcaaaagac |
33919269 |
T |
|
| Q |
301 |
ttgcttaaatcttgcaagacaagaacaacctaacgagatctacatcttttatccttttaccttctaccacttaag-----------aagtggtctatttt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33919270 |
ttgcttaaatcttgcaagacaagaacaacctaatgagatctacatcttttatccttttaccttctaccacttaagaaattttgtttaagtggtctatttt |
33919369 |
T |
|
| Q |
390 |
acttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattagcttatattgaaacacaattaatattattattcga |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
33919370 |
acttgttagttttatacaactttagttttaaggtagtcaaatattgctaagacatgtcaaaattaacttatattgaaacacaattaatattagtattcga |
33919469 |
T |
|
| Q |
490 |
accgcttactacatgtatattctaaaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33919470 |
accgcttactacatgtatattctaaaaa |
33919497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 520 - 676
Target Start/End: Complemental strand, 29255464 - 29255308
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
||||||||||||| |||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29255464 |
ggagggatatattgactctaagagtaagtttctagacttacaccaaatcacaacctttcattgtattttaatctaatggcttgaatgatagttttaaatg |
29255365 |
T |
|
| Q |
620 |
ttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattatt |
676 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
29255364 |
ttaatcatatgacctctttttggatctccatccaaataaagacattctccaattatt |
29255308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 543 - 673
Target Start/End: Complemental strand, 9981505 - 9981375
Alignment:
| Q |
543 |
gtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttgg |
642 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
9981505 |
gtaagtttgtagacttactccaaatcacaacctttcattgtattttaatctaacgacttgaatgataattttaaatgttaaacatgtgacctctttttgg |
9981406 |
T |
|
| Q |
643 |
atctccatccaaataaaaactttctccaatt |
673 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |
|
|
| T |
9981405 |
atctccatcctgataaagactttctccaatt |
9981375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 557 - 676
Target Start/End: Original strand, 13263774 - 13263892
Alignment:
| Q |
557 |
ttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaat |
656 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13263774 |
ttactccaaatcacaacctttcattgtattttaatctaacggttcgaatgatagttttaaatgttaatcatgtgacctcttttt-gatctccatccaaat |
13263872 |
T |
|
| Q |
657 |
aaaaactttctccaattatt |
676 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
13263873 |
aaagactttctccaattatt |
13263892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 526 - 668
Target Start/End: Original strand, 29254657 - 29254800
Alignment:
| Q |
526 |
atatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatc |
625 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
29254657 |
atattttaactccaagagtaagtttgtagacttactccaaatcataacctttcattatattttaatctaacggcttgaatgatagtcttaattgttaatc |
29254756 |
T |
|
| Q |
626 |
atgtga-cctctttttggatctccatccaaataaaaactttctc |
668 |
Q |
| |
|
|||||| |||||||||| |||||| ||| ||||| |||||||| |
|
|
| T |
29254757 |
atgtgaccctctttttgaatctccttcctcataaatactttctc |
29254800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 520 - 647
Target Start/End: Complemental strand, 17238527 - 17238399
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||||||| || || |||| |||||||| || |
|
|
| T |
17238527 |
ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg |
17238428 |
T |
|
| Q |
620 |
ttaatcatgtgacc-tctttttggatctc |
647 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
17238427 |
ttaatcatgtgaccatctttttggatctc |
17238399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 520 - 647
Target Start/End: Complemental strand, 6632136 - 6632008
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||||||||| | ||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||||||| || || |||| |||||||| || |
|
|
| T |
6632136 |
ggagggatatttagactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg |
6632037 |
T |
|
| Q |
620 |
ttaatcatgtgacc-tctttttggatctc |
647 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
|
|
| T |
6632036 |
ttaatcatgtgaccatctttttggatctc |
6632008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 520 - 633
Target Start/End: Original strand, 6631316 - 6631429
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||||||||| || |||||||| |||||||| ||||||||||| ||||| | ||||||||| ||||||||||||| ||||| |||| |||||||| || |
|
|
| T |
6631316 |
ggagggatattttgactccaagggtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg |
6631415 |
T |
|
| Q |
620 |
ttaatcatgtgacc |
633 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6631416 |
ttaatcatgtgacc |
6631429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 520 - 646
Target Start/End: Original strand, 17237705 - 17237832
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||||||||| || ||| ||||||||||||| ||||||||||| |||| | ||||||||| ||||||||||||| || || |||| |||||||| || |
|
|
| T |
17237705 |
ggagggatattttgactgcaagagtaagtttatagacttactccaaatatccacctttcatcttattttaatctaatggtttaaatgtgagttttaattg |
17237804 |
T |
|
| Q |
620 |
ttaatcatgtgacc-tctttttggatct |
646 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |
|
|
| T |
17237805 |
ttaatcatgtgaccatctttgtggatct |
17237832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 588 - 665
Target Start/End: Complemental strand, 13264472 - 13264394
Alignment:
| Q |
588 |
taatctaacggcttgaatgatagttttaaatgttaatcatgtga-cctctttttggatctccatccaaataaaaacttt |
665 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||| |||||||||| |||||| ||| ||||| ||||| |
|
|
| T |
13264472 |
taatctaacggcttgaatgatagtcttaattgttaatcatgtgaccctctttttgaatctccttcctcataaatacttt |
13264394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 568
Target Start/End: Original strand, 19990273 - 19990324
Alignment:
| Q |
517 |
aggggagggatatattaactccaagagtaagtttttagacttactctaaatc |
568 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||| ||||| |
|
|
| T |
19990273 |
aggggagggatatattgactccaagagtaagtctaaagacttactccaaatc |
19990324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 568
Target Start/End: Original strand, 47966992 - 47967043
Alignment:
| Q |
517 |
aggggagggatatattaactccaagagtaagtttttagacttactctaaatc |
568 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||| | |||||| ||||| |
|
|
| T |
47966992 |
aggggagggatatattgactccaagagtaagtgtttaaagttactccaaatc |
47967043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 2e-60; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 518 - 676
Target Start/End: Original strand, 30617392 - 30617550
Alignment:
| Q |
518 |
ggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaa |
617 |
Q |
| |
|
||||||||||||||| |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30617392 |
ggggagggatatattgactcaaaaagtaagtttctagacttactctaaatcacaacctttcattgtattttaatctaacagcttgaatgatagttttaaa |
30617491 |
T |
|
| Q |
618 |
tgttaatcatgtgacctctttttggatctccatccaaataaaaactttctccaattatt |
676 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
30617492 |
tattaaccatgtgacctctttttggatctccatccacacaaagactttctccaattatt |
30617550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 520 - 633
Target Start/End: Original strand, 41320009 - 41320122
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||||||| ||||| |||| |||||||| || |
|
|
| T |
41320009 |
ggagggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg |
41320108 |
T |
|
| Q |
620 |
ttaatcatgtgacc |
633 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
41320109 |
ttaatcatgtgacc |
41320122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 524 - 646
Target Start/End: Complemental strand, 13545414 - 13545291
Alignment:
| Q |
524 |
ggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaa |
623 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||||||| ||||| |||| ||||||| |||||| |
|
|
| T |
13545414 |
ggatattttgactccaagagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgggttttaattgttaa |
13545315 |
T |
|
| Q |
624 |
tcatgtgacc-tctttttggatct |
646 |
Q |
| |
|
|||| ||||| ||||| ||||||| |
|
|
| T |
13545314 |
tcatatgaccatctttgtggatct |
13545291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 647
Target Start/End: Original strand, 13544598 - 13544726
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||||||||| || ||| ||||||||||||| |||||||| || ||||| | ||||||||| ||||||||||||| | || |||| |||||||| || |
|
|
| T |
13544598 |
ggagggatattttgacttcaagagtaagtttatagacttattccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagttttaattg |
13544697 |
T |
|
| Q |
620 |
ttaatcatgtgacc-tctttttggatctc |
647 |
Q |
| |
|
|||||||||||||| | |||||||||||| |
|
|
| T |
13544698 |
ttaatcatgtgaccatttttttggatctc |
13544726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 647
Target Start/End: Complemental strand, 41320831 - 41320703
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||| ||||| || ||||||| ||||||||| ||||||||||| ||||| | ||||||||| ||||||||||||| || || |||| | |||||| || |
|
|
| T |
41320831 |
ggagagatattttgactccaatagtaagtttatagacttactccaaatctccacctttcatcttattttaatctaatggtttaaatgtgaattttaattg |
41320732 |
T |
|
| Q |
620 |
ttaatcatgtgacc-tctttttggatctc |
647 |
Q |
| |
|
||||||||| |||| |||||||||||||| |
|
|
| T |
41320731 |
ttaatcatgcgaccatctttttggatctc |
41320703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 595
Target Start/End: Original strand, 11169280 - 11169347
Alignment:
| Q |
528 |
atattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaa |
595 |
Q |
| |
|
||||| ||||||||| ||||||| |||| |||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
11169280 |
atattgactccaagaataagtttatagatttactctaaatctccacctttcatctcattttaatctaa |
11169347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 594
Target Start/End: Complemental strand, 8143402 - 8143321
Alignment:
| Q |
514 |
aaaaggggagggatatattaactccaa-gagtaagtttttagacttactctaaatcacaacctttcattgtattttaatcta |
594 |
Q |
| |
|
|||||||||||||||| || ||||||| |||||| | ||| || |||||| |||||||| || |||||| | |||||||||| |
|
|
| T |
8143402 |
aaaaggggagggatattttgactccaaggagtaactcttttgagttactccaaatcacatcccttcattatgttttaatcta |
8143321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 597
Target Start/End: Complemental strand, 15555093 - 15555016
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacg |
597 |
Q |
| |
|
|||||||||| |||||||||||||||| | ||| | |||||| |||||||| || | |||| |||||||||| |||| |
|
|
| T |
15555093 |
ggagggatattttaactccaagagtaactcttttaagttactccaaatcacatccctccattttattttaatccaacg |
15555016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 24983125 - 24983173
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatc |
568 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| | |||||||||||| |
|
|
| T |
24983125 |
ggagggatatatcgactccaagagtaagtctttaaagttactctaaatc |
24983173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 564 - 676
Target Start/End: Original strand, 32526833 - 32526945
Alignment:
| Q |
564 |
aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaaaact |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
32526833 |
aaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctctttttggatctccatccaaataaagact |
32526932 |
T |
|
| Q |
664 |
ttctccaattatt |
676 |
Q |
| |
|
||||||||||||| |
|
|
| T |
32526933 |
ttctccaattatt |
32526945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 515 - 665
Target Start/End: Complemental strand, 32527604 - 32527453
Alignment:
| Q |
515 |
aaaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttt |
614 |
Q |
| |
|
||||||||| ||||| || |||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| || |
|
|
| T |
32527604 |
aaaggggagagatattttgactctaagagtaagtttgtagacttactccaaatcacaacctttcattatattttaatctaacagcttgaatgatagtctt |
32527505 |
T |
|
| Q |
615 |
aaatgttaatcatgtga-cctctttttggatctccatccaaataaaaacttt |
665 |
Q |
| |
|
|| |||||||||||||| |||||||||| |||||| ||| ||||| ||||| |
|
|
| T |
32527504 |
aattgttaatcatgtgaccctctttttgaatctccttcctcataaatacttt |
32527453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 562
Target Start/End: Complemental strand, 27110531 - 27110485
Alignment:
| Q |
516 |
aaggggagggatatattaactccaagagtaagtttttagacttactc |
562 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| | |||||| |
|
|
| T |
27110531 |
aaggggagggatatattgactccaagagtaagtgtttaaagttactc |
27110485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 520 - 633
Target Start/End: Original strand, 52362640 - 52362753
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||||||||| || ||||||||||||||||| ||||| ||||| ||||| | ||||||||| ||||||||||||| ||||| |||| |||||||| || |
|
|
| T |
52362640 |
ggagggatattttgactccaagagtaagtttatagacctactccaaatctccacctttcatcttattttaatctaatggcttaaatgtgagttttaattg |
52362739 |
T |
|
| Q |
620 |
ttaatcatgtgacc |
633 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
52362740 |
ttaatcatgtgacc |
52362753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 520 - 624
Target Start/End: Complemental strand, 16674350 - 16674246
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatg |
619 |
Q |
| |
|
|||| ||||| || |||| |||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||| ||||| |||| |||||||| || |
|
|
| T |
16674350 |
ggagagatattttgactcaaagagtaagtttatagacttactccaaatctacacctttcatcttattttaatctaatggcttaaatgtgagttttaattg |
16674251 |
T |
|
| Q |
620 |
ttaat |
624 |
Q |
| |
|
||||| |
|
|
| T |
16674250 |
ttaat |
16674246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 647
Target Start/End: Original strand, 16673555 - 16673658
Alignment:
| Q |
545 |
aagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttgga |
643 |
Q |
| |
|
|||||| ||||||||||| |||| | ||||||||| ||||||||||||| || || |||| | |||||| |||||||||||||||| |||||||||| |
|
|
| T |
16673555 |
aagtttatagacttactcaaaatatccacctttcatcttattttaatctaatggtttaaatgtgaattttaattgttaatcatgtgaccatctttttgga |
16673654 |
T |
|
| Q |
644 |
tctc |
647 |
Q |
| |
|
|||| |
|
|
| T |
16673655 |
tctc |
16673658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 516 - 580
Target Start/End: Original strand, 48207595 - 48207659
Alignment:
| Q |
516 |
aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcat |
580 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| | ||||||| || ||||| |||||||||| |
|
|
| T |
48207595 |
aaggggagggatatattgactccaagaataagtctaaagacttattccaaatctaaacctttcat |
48207659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 516 - 647
Target Start/End: Original strand, 41516456 - 41516588
Alignment:
| Q |
516 |
aaggggagggatatattaactccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagtttta |
615 |
Q |
| |
|
|||||||||||||| || |||| ||||||| ||| ||||||||||| ||||| | ||||||||| ||||||||||||| | || |||| ||||||| |
|
|
| T |
41516456 |
aaggggagggatattttgactctaagagtatatttatagacttactccaaatctccacctttcatcttattttaatctaatagtttaaatgtgagtttta |
41516555 |
T |
|
| Q |
616 |
aatgttaatcatgtgacc-tctttttggatctc |
647 |
Q |
| |
|
| |||||||||||||||| ||||||| |||||| |
|
|
| T |
41516556 |
attgttaatcatgtgaccatcttttttgatctc |
41516588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 568
Target Start/End: Complemental strand, 8469861 - 8469813
Alignment:
| Q |
520 |
ggagggatatattaactccaagagtaagtttttagacttactctaaatc |
568 |
Q |
| |
|
|||||||||| || ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
8469861 |
ggagggatattttgactccaagagtaaatttatagacttactctaaatc |
8469813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 583 - 646
Target Start/End: Complemental strand, 41517221 - 41517157
Alignment:
| Q |
583 |
tattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacc-tctttttggatct |
646 |
Q |
| |
|
||||||||||||| ||||| |||| |||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
41517221 |
tattttaatctaatggcttaaatgtgagttttaattgttaatcatgtgaccatctttgtggatct |
41517157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 676
Target Start/End: Original strand, 14125165 - 14125305
Alignment:
| Q |
537 |
ccaagagtaagtttttagacttactctaaatcacaacctttcattgtattttaatctaacggcttgaatgatagttttaaatgttaatcatgtgacctc- |
635 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||||| | |||||||||| ||||||||| ||||||||||| ||||||||| ||||||| |||| ||||| |
|
|
| T |
14125165 |
ccaaaagtaagtttatagacttactccaaatcgctacctttcattttattttaatttaacggcttgatcattagttttaattgttaataatgtaacctcc |
14125264 |
T |
|
| Q |
636 |
tttttggatctccatccaaataaaaactttctccaattatt |
676 |
Q |
| |
|
||||| ||||| || ||||| |||||||||||||||| |
|
|
| T |
14125265 |
tttttaaatctcattcttcataaatactttctccaattatt |
14125305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 562
Target Start/End: Original strand, 2479292 - 2479338
Alignment:
| Q |
516 |
aaggggagggatatattaactccaagagtaagtttttagacttactc |
562 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| | |||||| |
|
|
| T |
2479292 |
aaggggagggatatattgactccaagagtaagtgtttaaagttactc |
2479338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 29525101 - 29525133
Alignment:
| Q |
514 |
aaaaggggagggatatattaactccaagagtaa |
546 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
29525101 |
aaaaggggagggatatattgactccaagagtaa |
29525133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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