View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_high_41 (Length: 249)

Name: NF17198_high_41
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_high_41
NF17198_high_41
[»] chr4 (14 HSPs)
chr4 (83-159)||(24771248-24771324)
chr4 (12-87)||(24771478-24771553)
chr4 (13-81)||(24773400-24773468)
chr4 (30-82)||(12413364-12413416)
chr4 (14-81)||(24839685-24839752)
chr4 (14-81)||(24843143-24843210)
chr4 (27-81)||(24957025-24957079)
chr4 (185-230)||(24771168-24771213)
chr4 (111-159)||(24839508-24839556)
chr4 (111-159)||(24842966-24843014)
chr4 (85-159)||(16651256-16651330)
chr4 (28-78)||(16651440-16651490)
chr4 (23-76)||(24759371-24759424)
chr4 (111-151)||(24759188-24759228)
[»] scaffold1886 (2 HSPs)
scaffold1886 (111-159)||(465-513)
scaffold1886 (14-81)||(650-717)


Alignment Details
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 24771324 - 24771248
Alignment:
Q  83 tacgatcaaagaaattgaaaagtcaaagaattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24771324 tacgatcaaagaaattgaaaagtcaaagaattacatgaaaatttaggacaaattataagactaacaatattataatg 24771248  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 24771553 - 24771478
Alignment:
Q  12 gagatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtcttttacga 87  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  24771553 gagatgaatgatggtatatttgtgtgtttaatttacttccatctcattattttgatgtttttagagtcttttacga 24771478  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 24773468 - 24773400
Alignment:
Q  13 agatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    ||||||||  |||| ||||||||||||| |||||||||| ||| |||||| ||||||||||||||||||    
T  24773468 agatgaatagtggtttatttgtgtgttttacttacttccgtcttattattatgatgtttctagagtctt 24773400  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 12413364 - 12413416
Alignment:
Q  30 tttgtgtgtttaacttacttccatctcattattttgatgtttctagagtcttt 82  Q
    ||||||||||  ||||| ||||||| |||||||||||||||||||||||||||    
T  12413364 tttgtgtgttgtacttatttccatcccattattttgatgtttctagagtcttt 12413416  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 24839752 - 24839685
Alignment:
Q  14 gatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||| | |||| ||||||||||||| ||||||||| ||| ||||||| ||||||||||||| ||||    
T  24839752 gatgaacggtggtttatttgtgtgttttacttacttctatcccattattctgatgtttctagactctt 24839685  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 24843210 - 24843143
Alignment:
Q  14 gatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||| | |||| ||||||||||||| ||||||||| ||| ||||||| ||||||||||||| ||||    
T  24843210 gatgaacggtggtttatttgtgtgttttacttacttctatcccattattctgatgtttctagactctt 24843143  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 24957079 - 24957025
Alignment:
Q  27 atatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||||||| ||| ||||||||| |||||||||||  |||||||||||||||||    
T  24957079 atatttgtgtattttacttacttcaatctcattattacgatgtttctagagtctt 24957025  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 24771213 - 24771168
Alignment:
Q  185 tgaagaaataattttttacctggatttctgggaaggctcacacaat 230  Q
    ||||||||||||||||||||||||||||| |||| || ||||||||    
T  24771213 tgaagaaataattttttacctggatttctaggaaagcacacacaat 24771168  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 24839556 - 24839508
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  24839556 aattacatgaaagtttgggacgaattataagagtaacaatattacaatg 24839508  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 24843014 - 24842966
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| ||||    
T  24843014 aattacatgaaagtttgggacgaattataagagtaacaatattacaatg 24842966  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 16651330 - 16651256
Alignment:
Q  85 cgatcaaagaaattgaaaagtcaaagaattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    ||||||||||||||| || |||| | ||||| || ||| ||| ||||||||||||| |  |||||||||||||||    
T  16651330 cgatcaaagaaattgcaaggtcagataattaaataaaattttgggacaaattataataggaacaatattataatg 16651256  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 16651490 - 16651440
Alignment:
Q  28 tatttgtgtgtttaacttacttccatctcattattttgatgtttctagagt 78  Q
    ||||||||||||| ||||||||||||| ||||||| |||| ||| ||||||    
T  16651490 tatttgtgtgttttacttacttccatcccattattatgatatttatagagt 16651440  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 24759424 - 24759371
Alignment:
Q  23 tggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctaga 76  Q
    |||| |||||| |||||| |||||||||||||| |||||| |||||||| ||||    
T  24759424 tggtttatttgcgtgtttcacttacttccatcttattattatgatgtttataga 24759371  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 24759228 - 24759188
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaata 151  Q
    |||||||||||||||| |||||||| |||||| ||||||||    
T  24759228 aattacatgaaagtttgggacaaataataagagtaacaata 24759188  T

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Target: scaffold1886 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold1886
Description:

Target: scaffold1886; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 513 - 465
Alignment:
Q  111 aattacatgaaagtttaggacaaattataagactaacaatattataatg 159  Q
    |||||||||||||||| ||||||||||||||| ||||||||||| ||||    
T  513 aattacatgaaagtttgggacaaattataagagtaacaatattacaatg 465  T

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Target: scaffold1886; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 717 - 650
Alignment:
Q  14 gatgaatgatggtatatttgtgtgtttaacttacttccatctcattattttgatgtttctagagtctt 81  Q
    |||||| | |||| ||||||||||||| ||||||||| ||| ||||||| |||| |||||||| ||||    
T  717 gatgaacggtggtttatttgtgtgttttacttacttctatcccattattctgatatttctagactctt 650  T

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