View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_high_44 (Length: 228)

Name: NF17198_high_44
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_high_44
NF17198_high_44
[»] chr7 (3 HSPs)
chr7 (21-90)||(8431501-8431570)
chr7 (153-209)||(8434908-8434963)
chr7 (167-209)||(8378248-8378290)
[»] scaffold0060 (2 HSPs)
scaffold0060 (153-209)||(75460-75515)
scaffold0060 (21-78)||(75920-75977)


Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 8431501 - 8431570
Alignment:
Q  21 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaacagaatgcagatt 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431501 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaacagaatgcagatt 8431570  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 8434908 - 8434963
Alignment:
Q  153 tgttccttaatactagtcaacatccacatttgagtagagcaaaacaaagttcttccc 209  Q
    |||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  8434908 tgttccctaata-tagtcaacatctacatttgagtagaacaaaacaaagttcttccc 8434963  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 8378248 - 8378290
Alignment:
Q  167 agtcaacatccacatttgagtagagcaaaacaaagttcttccc 209  Q
    |||||||||||||||||||||| | |||||| |||||||||||    
T  8378248 agtcaacatccacatttgagtaaaacaaaaccaagttcttccc 8378290  T

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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 75515 - 75460
Alignment:
Q  153 tgttccttaatactagtcaacatccacatttgagtagagcaaaacaaagttcttccc 209  Q
    |||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  75515 tgttccctaata-tagtcaacatctacatttgagtagaacaaaacaaagttcttccc 75460  T

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Target: scaffold0060; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 75977 - 75920
Alignment:
Q  21 aaatgacaaatcttaacactaattgaaattaggagtacaagaagttatagagagcaac 78  Q
    |||||| |||||||| || |||||||||||| ||||||||||||||||| ||| ||||    
T  75977 aaatgataaatcttatcattaattgaaattaagagtacaagaagttataaagaacaac 75920  T

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