View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_high_45 (Length: 228)

Name: NF17198_high_45
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_high_45
NF17198_high_45
[»] chr7 (23 HSPs)
chr7 (1-224)||(18495802-18496024)
chr7 (42-205)||(31493389-31493553)
chr7 (25-224)||(1882716-1882915)
chr7 (1-219)||(10649713-10649931)
chr7 (8-221)||(140558-140770)
chr7 (42-203)||(21232941-21233099)
chr7 (42-205)||(15612142-15612306)
chr7 (42-205)||(5530548-5530710)
chr7 (10-148)||(1873226-1873364)
chr7 (42-205)||(18662907-18663068)
chr7 (1-185)||(22338892-22339076)
chr7 (98-200)||(9917043-9917145)
chr7 (98-200)||(9924955-9925057)
chr7 (1-94)||(8873237-8873330)
chr7 (41-95)||(17152721-17152775)
chr7 (98-176)||(13708005-13708083)
chr7 (106-203)||(21884613-21884711)
chr7 (42-95)||(10586597-10586650)
chr7 (106-186)||(21227860-21227941)
chr7 (42-94)||(21501737-21501789)
chr7 (148-203)||(2348385-2348440)
chr7 (127-205)||(10938170-10938248)
chr7 (145-201)||(5102061-5102116)
[»] chr5 (16 HSPs)
chr5 (1-205)||(17470735-17470939)
chr5 (1-221)||(19085674-19085887)
chr5 (22-221)||(24260972-24261171)
chr5 (42-205)||(17171016-17171180)
chr5 (42-205)||(19762734-19762898)
chr5 (110-203)||(26252353-26252446)
chr5 (2-205)||(22871100-22871303)
chr5 (106-201)||(27920899-27920994)
chr5 (42-223)||(9521262-9521447)
chr5 (43-205)||(17635752-17635920)
chr5 (145-205)||(24164506-24164566)
chr5 (35-205)||(25579334-25579503)
chr5 (45-113)||(26314196-26314264)
chr5 (150-205)||(18938416-18938471)
chr5 (146-205)||(26066704-26066763)
chr5 (42-91)||(24167100-24167149)
[»] chr6 (12 HSPs)
chr6 (1-173)||(22565658-22565829)
chr6 (8-179)||(23645253-23645424)
chr6 (42-187)||(9726477-9726623)
chr6 (42-205)||(2587177-2587340)
chr6 (1-205)||(14725842-14726046)
chr6 (45-172)||(24216008-24216134)
chr6 (148-205)||(4340324-4340381)
chr6 (156-205)||(14078933-14078982)
chr6 (148-205)||(20144559-20144615)
chr6 (148-205)||(22188224-22188280)
chr6 (153-205)||(15466957-15467009)
chr6 (145-205)||(22849957-22850017)
[»] chr8 (8 HSPs)
chr8 (36-221)||(17977073-17977261)
chr8 (98-205)||(17965535-17965642)
chr8 (42-205)||(24905100-24905263)
chr8 (44-205)||(5052391-5052550)
chr8 (46-166)||(30121655-30121775)
chr8 (102-178)||(5855623-5855699)
chr8 (96-202)||(15064830-15064936)
chr8 (145-205)||(6885539-6885599)
[»] chr2 (12 HSPs)
chr2 (1-203)||(26291501-26291703)
chr2 (37-175)||(27418687-27418826)
chr2 (37-175)||(27419833-27419972)
chr2 (42-205)||(45553601-45553764)
chr2 (42-205)||(25939603-25939767)
chr2 (7-96)||(21078197-21078286)
chr2 (118-205)||(45621382-45621469)
chr2 (154-205)||(22568190-22568241)
chr2 (138-201)||(25348568-25348631)
chr2 (42-95)||(29027971-29028024)
chr2 (145-205)||(19199626-19199686)
chr2 (153-205)||(23011215-23011267)
[»] chr1 (8 HSPs)
chr1 (7-205)||(15299439-15299637)
chr1 (1-224)||(22620698-22620920)
chr1 (42-187)||(34481413-34481558)
chr1 (1-205)||(16787210-16787412)
chr1 (19-142)||(32382531-32382655)
chr1 (145-205)||(44795950-44796010)
chr1 (151-204)||(24281865-24281918)
chr1 (154-187)||(26021326-26021359)
[»] chr3 (8 HSPs)
chr3 (42-200)||(820989-821147)
chr3 (43-205)||(6290290-6290452)
chr3 (42-123)||(20398090-20398172)
chr3 (156-206)||(19171318-19171367)
chr3 (44-113)||(13907813-13907882)
chr3 (1-187)||(22245736-22245914)
chr3 (145-205)||(3115877-3115937)
chr3 (147-187)||(8144193-8144233)
[»] scaffold0672 (1 HSPs)
scaffold0672 (49-205)||(4349-4506)
[»] scaffold0128 (1 HSPs)
scaffold0128 (1-185)||(77-262)
[»] chr4 (11 HSPs)
chr4 (49-203)||(12839258-12839413)
chr4 (43-187)||(9264494-9264638)
chr4 (145-205)||(25120687-25120747)
chr4 (145-224)||(4215003-4215082)
chr4 (42-200)||(9053136-9053295)
chr4 (17-156)||(11700085-11700224)
chr4 (148-205)||(17672570-17672627)
chr4 (103-205)||(1833037-1833140)
chr4 (36-91)||(30600363-30600418)
chr4 (42-135)||(11520667-11520760)
chr4 (97-205)||(22526797-22526905)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 18495802 - 18496024
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18495802 cacatggtgatctttacgtgtggggtt-atctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 18495900  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||      
T  18495901 gttcataaaggttccctcatctatgaatcttagaaatacataagacattctccctcttagtagttctgcaaacgggcagccctatcagcatctattttgt 18496000  T
Q  201 caaggaaagagaatggagttattg 224  Q
    ||||||||||||||||||||||||    
T  18496001 caaggaaagagaatggagttattg 18496024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 31493389 - 31493553
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcat-aaaggttccctcatctatgcatcttagaaataca 140  Q
    |||||||||||||| ||||||||| ||||| |||||||||| ||||||||||||| | ||||| | |||||||  | |||||||| ||||||| | ||||    
T  31493389 gtaattgaaacatagacttaagttggagtttctaaatttccaaaggtatgatggccagtgttcctgaaaggttttcccatctatgaatcttaggagtaca 31493488  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||| ||||||||||||||||||||||| ||||| ||||||||||||| | ||||| |||||||||    
T  31493489 taacacactctccctcttagtagttctacaaacaggcagccctatcaacgtctaccttaccaagg 31493553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 1882716 - 1882915
Alignment:
Q  25 gtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctat 124  Q
    ||||||||||||||   |||||||||||||||||||| | | || |||| | | || | ||||||||||||| | ||||| | ||||||| ||||| |||    
T  1882716 gtttatctcactcaaaggtaattgaaacataaacttatggtagatttccaagaattgcaaaggtatgatggccagtgttcctgaaggttctctcatttat 1882815  T
Q  125 gcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaaggaaagagaatggagttattg 224  Q
    | ||||||||| ||||||| |||| ||| ||||||||||||||  ||||||| |||| |||||   | ||| |||| |||||||||||||||||||||||    
T  1882816 ggatcttagaagtacataacacacactctctcttagtagttctagaaacgggaagccatatcagtgtataccttacaaaggaaagagaatggagttattg 1882915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 10649713 - 10649931
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||||| ||||| |||  |||||||||||||||||||| | ||||||||||| |||||||| | | ||||||||| |||||  ||||||||||||| |||    
T  10649713 cacatgatgatccttatgtgtggggtttatctcactcatgggtaattgaaacttaaacttagggtagagttcctagatttcgaaaggtatgatggccaat 10649812  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    |||| | ||||||| || ||||||| |||||| || ||||||| ||| ||||  ||||| ||||| |  |||| | || |||||| | | |||||||||     
T  10649813 gttcctgaaggttctcttatctatgaatcttaaaagtacataacacattctctatcttaatagttatataaacagtcaaccctattagcgtctactttat 10649912  T
Q  201 caaggaaagagaatggagt 219  Q
    ||||| |||| ||||||||    
T  10649913 caagggaagataatggagt 10649931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 140558 - 140770
Alignment:
Q  8 tgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcata 107  Q
    ||||| |||| |||||||||||||| || || | |||||||||||||||||||| | | ||||||||| |||||| ||||||||||||  | | |||||     
T  140558 tgatccttacgtgtggggtttatctaacccatgagtaattgaaacataaacttagggtagagttcctagatttccaaaggtatgatggtcagtattcatg 140657  T
Q  108 aaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaaggaa 207  Q
    |||||| |||||| | || ||||||||| ||||||| | ||||||  ||||||||||| | |||| ||  | |||||||| | ||||| ||||||| | |    
T  140658 aaggtt-cctcatatttgaatcttagaagtacataacatactctctatcttagtagttgtacaaagggagaaccctatcaacgtctaccttaccaatgga 140756  T
Q  208 agagaatggagtta 221  Q
    ||||||||||||||    
T  140757 agagaatggagtta 140770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 21232941 - 21233099
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacat 141  Q
    |||||||||||||| |||||| || | |||||||||||||| |||||||| | |||||||||| ||||||||  | |||||||| ||||||||| |||||    
T  21232941 gtaattgaaacatagacttaaattagtgttcctaaatttccaaaggtatggttgctaatgttcgtaaaggttttcccatctatgaatcttagaagtacat 21233040  T
Q  142 aagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaa 203  Q
    |  ||||||||||| |||||   | | |||| | |||||||||||| | ||||| |||||||    
T  21233041 atcacactctcccttttagt---tttacaaatgagcagccctatcagcgtctaccttaccaa 21233099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 205
Target Start/End: Complemental strand, 15612306 - 15612142
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaaataca 140  Q
    |||||||||||||| |||| | || | |||||||||||||  |||| |||| | || ||||||| ||||||||||||| |||||| ||||||| ||||||    
T  15612306 gtaattgaaacatagacttcaattagcgttcctaaatttctaaaggcatgacttgccaatgttcctaaaggttccctcctctatgaatcttagcaataca 15612207  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||  | ||| ||| |||   ||||||| |||||||| |||||||||| | |||||||||||||||    
T  15612206 tagcatactatccttctcgatagttctacaaacgggtagccctatcagcgtctactttaccaagg 15612142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 5530548 - 5530710
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacat 141  Q
    |||||| |||||||||||||| || | |||||||||||||| || ||||| |||| | ||||| |||| |||  | |||||||| |||||| |  |||||    
T  5530548 gtaattaaaacataaacttaaattggcgttcctaaatttccaaatgtatgttggccagtgttcctaaatgttttc-catctatgaatcttatatgtacat 5530646  T
Q  142 aagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    || |||||||||||||  |||||||| |||| ||||| |||||||  ||||||| |||||||||    
T  5530647 aacacactctccctctcggtagttctacaaatgggcacccctatcggcatctaccttaccaagg 5530710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 1873226 - 1873364
Alignment:
Q  10 atctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaa 109  Q
    |||||||| |||| ||||||||||||||| | |||||||||||||||||  | | | || |||||| | |||| ||||||||||||| | ||||| | ||    
T  1873226 atctttacgtgtgcggtttatctcactcaagggtaattgaaacataaacaaatggtagatttcctagaattccaaaggtatgatggccagtgttcctgaa 1873325  T
Q  110 ggttccctcatctatgcatcttagaaatacataagacac 148  Q
    ||||| ||||| |||| ||||||||| | ||||| ||||    
T  1873326 ggttctctcatttatggatcttagaagttcataacacac 1873364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 18662907 - 18663068
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacat 141  Q
    |||||||||||||| | ||||||    |||||||||||||| |||||||| |||| | ||||| ||||||||  | |||||||| ||||||| | |  ||    
T  18662907 gtaattgaaacatatagttaagtagacgttcctaaatttccaaaggtatggtggccagtgttcctaaaggttttcccatctatgaatcttaggagt--at 18663004  T
Q  142 aagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    || ||||||||||| |  |||||||| ||||||| || |||||||| | ||||| |||||||||    
T  18663005 aacacactctccctttcggtagttctacaaacggacaaccctatcagcgtctaccttaccaagg 18663068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 22339076 - 22338892
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||| ||||||| |||| |||||||| |  ||| |||| | |||||||||||||| |||||| || | |||| |||||| || ||||||||||||| | |    
T  22339076 cacacggtgatccttacgtgtggggtcttactccctcaagggtaattgaaacatagacttaaattggtgttcataaattcccaaaggtatgatggccagt 22338977  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctat 185  Q
    |||| ||||||||    |||||||| ||||||  | ||||||  ||||||| |||||  |||||||| ||||| || ||||||||    
T  22338976 gttcctaaaggtttttccatctatgaatcttatgagtacatagcacactcttcctctcggtagttctacaaacaggtagccctat 22338892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 9917043 - 9917145
Alignment:
Q  98 aatgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactt 197  Q
    |||| ||| ||||||||||||||||||| || |||||| || |||  |||||||||||||  ||| |||| |||| |||||||||||||| ||||||| |    
T  9917043 aatgctcaaaaaggttccctcatctatgaattttagaagtaaatagcacactctccctctcggtatttctacaaatgggcagccctatcagcatctacct 9917142  T
Q  198 tac 200  Q
    |||    
T  9917143 tac 9917145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 9924955 - 9925057
Alignment:
Q  98 aatgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactt 197  Q
    |||| ||| ||||||||||||||||||| || |||||| || |||  |||||||||||||  ||| |||| |||| |||||||||||||| ||||||| |    
T  9924955 aatgctcaaaaaggttccctcatctatgaattttagaagtaaatagcacactctccctctcggtatttctacaaatgggcagccctatcagcatctacct 9925054  T
Q  198 tac 200  Q
    |||    
T  9925055 tac 9925057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 8873237 - 8873330
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatg 94  Q
    |||||||||||| |||  |||| ||||| ||||||| ||| ||||||||||||||||| || | | ||||||||| |||||| |||||||||||    
T  8873237 cacatggtgatccttatgtgtgtggtttgtctcactgaggagtaattgaaacataaacataggatagagttcctagatttccaaaggtatgatg 8873330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 17152775 - 17152721
Alignment:
Q  41 tgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatgg 95  Q
    |||||||||||||||||||||| || | |||||||||||||| ||||||||||||    
T  17152775 tgtaattgaaacataaacttaaattggtgttcctaaatttccaaaggtatgatgg 17152721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 13708005 - 13708083
Alignment:
Q  98 aatgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacggg 176  Q
    ||||||| ||||||| | |||||||||| |||||||||  |||||  |||||||||||||| |||||| | ||||||||    
T  13708005 aatgttcttaaaggtccgctcatctatgaatcttagaagcacatagcacactctccctcttggtagttatacaaacggg 13708083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 21884711 - 21884613
Alignment:
Q  106 taaaggttccctcatctat-gcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaa 203  Q
    |||||||||||||| |||| | |||||||||  ||||| |||||||||||||| ||||||||| |||||| | | |||||| | | ||||| |||||||    
T  21884711 taaaggttccctcacctattgaatcttagaagaacatatgacactctccctctcagtagttctacaaacgtgtaaccctataagcgtctaccttaccaa 21884613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 10586650 - 10586597
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatgg 95  Q
    ||||||||||||||||||||| || | || ||||||||||| ||||||||||||    
T  10586650 gtaattgaaacataaacttaaattggtgtgcctaaatttccaaaggtatgatgg 10586597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 21227860 - 21227941
Alignment:
Q  106 taaaggttccctcatctatgcatcttagaaatacataag-acactctccctcttagtagttctgcaaacgggcagccctatc 186  Q
    |||||||||||||||||||  ||||||||| ||||| || | ||||| |||||| |||||||| ||||| |||| |||||||    
T  21227860 taaaggttccctcatctattaatcttagaagtacatcagcatactcttcctcttggtagttctacaaacaggcaaccctatc 21227941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 21501737 - 21501789
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatg 94  Q
    ||||||||||||||||||||| ||   |||||||||||||| |||||||||||    
T  21501737 gtaattgaaacataaacttaaattgacgttcctaaatttcctaaggtatgatg 21501789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 2348440 - 2348385
Alignment:
Q  148 ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaa 203  Q
    ||||| |||||||||||||| |||||||||| |||||||| | ||||| |||||||    
T  2348440 ctctcactcttagtagttctacaaacgggcaaccctatcagcgtctaccttaccaa 2348385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 10938170 - 10938248
Alignment:
Q  127 atcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||| ||||||| ||||||||||| |  | |||||| |||||||| | |||||| ||| ||||| |||||||||    
T  10938170 atcttagaagtacataacacactctccctttctggagttctacaaacgggtaaccctataatcgtctaccttaccaagg 10938248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 5102116 - 5102061
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttacc 201  Q
    ||||||||||||| ||||||||| |||||| ||| ||||||| |||||||| |||||    
T  5102116 acactctccctctcagtagttctacaaacgagcaaccctatc-tcatctaccttacc 5102061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 17470939 - 17470735
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||||||||||| |||||||||||||||  ||| |||| | |||||||||||||||||||||||| |  ||| ||||||||| |||||||| |||| |||    
T  17470939 cacatggtgatccttacatgtggggttttgctccctcaagggtaattgaaacataaacttaagttggcattcttaaatttccaaaggtatggtggccaat 17470840  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    |||| ||||||||  | |||||||| ||||||| | ||||||| | ||||||||||| ||||||||| |||||||| | ||||||||   ||||| ||||    
T  17470839 gttcctaaaggttttcccatctatgaatcttaggagtacataacaaactctccctctcagtagttctacaaacgggaatccctatcagtgtctaccttac 17470740  T
Q  201 caagg 205  Q
    |||||    
T  17470739 caagg 17470735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19085887 - 19085674
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaa 99  Q
    |||| |||||||||||| |||||||| ||||||||||||   ||||||||||||||||||||||| ||||||||||||| || ||||||||| |  | ||    
T  19085887 cacacggtgatctttacgtgtggggtctatctcactcag---taattgaaacataaacttaagttagagttcctaaattaccaaaggtatgacttcccaa 19085791  T
Q  100 tgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctacttta 199  Q
    ||||| |||||||||||| || |||| ||||||||     |||  ||| ||| ||||| ||||||||| |||| ||||||| |||||| ||||||| |||    
T  19085790 tgttcctaaaggttccctaatttatgaatcttaga-----atagcacattcttcctctcagtagttctacaaatgggcagctctatcagcatctacctta 19085696  T
Q  200 ccaaggaaagagaatggagtta 221  Q
    |||| |||| ||||||||||||    
T  19085695 ccaatgaaaaagaatggagtta 19085674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 24260972 - 24261171
Alignment:
Q  22 ggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatc 121  Q
    ||||||||||||||||| | |||||||||||||||||||| |   ||||||||| |||||| |||||||||| || | ||||| | ||||||| ||| ||    
T  24260972 ggggtttatctcactcaagggtaattgaaacataaacttagggaagagttcctagatttccaaaggtatgatagccagtgttcttgaaggttctctcgtc 24261071  T
Q  122 tatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaaggaaagagaatggagtta 221  Q
    |||| ||||||||  ||||||  ||||| |   ||||||||||| | |||||||| |||||||||| | ||||| ||||| |||  ||||||||||||||    
T  24261072 tatgaatcttagacgtacatagcacactttatatcttagtagttatacaaacgggtagccctatcagcgtctaccttaccgagggtagagaatggagtta 24261171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 205
Target Start/End: Complemental strand, 17171180 - 17171016
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaagg-ttccctcatctatgcatcttagaaataca 140  Q
    |||| ||||||||||||||| | | |||||||||||||||| || |||||||||  | ||||| |||||| ||  | |||||||| ||||||| | ||||    
T  17171180 gtaactgaaacataaacttatggtggagttcctaaatttccaaaagtatgatggtcagtgttcctaaagggttttcccatctatgaatcttagcagtaca 17171081  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||| ||||||||||||||  ||||||| ||||| ||||||||||||| | ||||| |||||||||    
T  17171080 taacacactctccctcttgatagttctacaaacaggcagccctatcagcgtctaccttaccaagg 17171016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 205
Target Start/End: Complemental strand, 19762898 - 19762734
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaaataca 140  Q
    ||||| |||||||||||  || || |||||| ||||||||| ||||||||| |  | ||||||| |||||||||| |||| |||| ||||||||| ||||    
T  19762898 gtaatcgaaacataaacacaaattagagttcttaaatttccaaaggtatgactttccaatgttcctaaaggttccttcatttatgaatcttagaagtaca 19762799  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |   |||||||||||||  |||||||| ||||||| ||||||||||| | ||||| |||||||||    
T  19762798 ttgcacactctccctctcggtagttctccaaacggacagccctatcagcgtctaccttaccaagg 19762734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 26252353 - 26252446
Alignment:
Q  110 ggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaa 203  Q
    ||||| |||||| ||| ||||||||| ||||||  |||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||    
T  26252353 ggttcactcatcaatgaatcttagaagtacatagcacactctccctctcggtagttctgcaaacgggcagccctatcagcatctaccttaccaa 26252446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 22871100 - 22871303
Alignment:
Q  2 acatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatg 101  Q
    ||||||||||| |||| |||||||| |  ||| |||||| |||||||||||||||||||||||| | |||||||||||||| |||||| | |||| | ||    
T  22871100 acatggtgatccttacgtgtggggtcttactccctcaggggtaattgaaacataaacttaagttggcgttcctaaatttccaaaggtaaggtggcgagtg 22871199  T
Q  102 ttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttacc 201  Q
    ||| ||| ||||    | |||||| ||||||| | || |||  ||||| || ||||  |||||| | |||||||||| |||||||  | ||||| |||||    
T  22871200 ttcctaagggttttaccttctatgaatcttaggagtagatagcacactatctctctcggtagttttacaaacgggcaaccctatccgcgtctaccttacc 22871299  T
Q  202 aagg 205  Q
    ||||    
T  22871300 aagg 22871303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 27920994 - 27920899
Alignment:
Q  106 taaaggttccctcatctatgcatcttagaaatacataag-acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttacc 201  Q
    |||||||||||||||||||| ||||||||| ||||| || | | ||||||||| || |||||| |||||||||||||||||| |||||||| |||||    
T  27920994 taaaggttccctcatctatgaatcttagaagtacatcagcatattctccctctcagcagttctacaaacgggcagccctatc-tcatctaccttacc 27920899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 223
Target Start/End: Original strand, 9521262 - 9521447
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggct-aatgttcataaaggttccctcatctatgcatcttagaaataca 140  Q
    |||||||||| ||| |||||| || | ||||||| |||| | || ||||||   || ||||||  |||||||| ||||| ||||   |||||||| ||||    
T  9521262 gtaattgaaatatatacttaaattagtgttcctatattttcaaatgtatgacttctcaatgttgttaaaggtttcctcaactattagtcttagaagtaca 9521361  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg---aaagagaatggagttatt 223  Q
    ||  |||||||||||||  |||||||| ||||||| || |||||||||| |||||||||| ||||   || |||||||||||||||    
T  9521362 tagcacactctccctctcggtagttctacaaacggacaaccctatcatcgtctactttacgaaggtgaaaggagaatggagttatt 9521447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 17635752 - 17635920
Alignment:
Q  43 taattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacata 142  Q
    |||||||||||||||||||||||   |||||||||||||||||||||| ||| |   ||||| ||||||||    |||||||| ||||||| | ||||||    
T  17635752 taattgaaacataaacttaagttgacgttcctaaatttccgaaggtataatgaccggtgttcctaaaggttttaccatctatgaatcttaggagtacata 17635851  T
Q  143 agaca------ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
      |||      ||||| ||||  |||||||| |||| ||||||| | |||| ||||||| |||||||||    
T  17635852 gcacacactctctctctctctcggtagttctacaaatgggcagcgcgatcagcatctaccttaccaagg 17635920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 24164566 - 24164506
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||||||||||||| |||| |||| |||||||||||||| | ||||| |||||||||    
T  24164566 acactctccctcttagtacttctacaaatgggcagccctatcagcgtctaccttaccaagg 24164506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 25579503 - 25579334
Alignment:
Q  35 ctcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttaga 134  Q
    |||||| ||||||||||||||| | |||  | |||||||||||||||| |||||||| |||| |   ||| | ||||||  |||||| ||| ||||||||    
T  25579503 ctcaggggtaattgaaacataa-cataaactagagttcctaaatttccaaaggtatggtggccaggtttccttaaggttatctcatccatgaatcttaga 25579405  T
Q  135 aatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    | ||||||  | |||||||||||  ||| ||||  ||| | ||| |||||||| | ||||| |||||||||    
T  25579404 agtacatagcatactctccctctcggtatttctataaatgagcacccctatcagcgtctaccttaccaagg 25579334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 26314196 - 26314264
Alignment:
Q  45 attgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggtt 113  Q
    ||||||||||| |||||| || | |||||||||||||| |||||||| |||| | ||||| ||||||||    
T  26314196 attgaaacatagacttaaattggcgttcctaaatttccaaaggtatggtggccagtgttcctaaaggtt 26314264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 18938416 - 18938471
Alignment:
Q  150 ctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||| |||||||||||||||| |||||||||||| | | ||| |||||||||    
T  18938416 ctccctctcagtagttctgcaaacgtgcagccctatcaacgtgtaccttaccaagg 18938471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 26066704 - 26066763
Alignment:
Q  146 cactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||||||  |||||||| ||||||||||||||||||| | ||||  |||||||||    
T  26066704 cactctccctctcggtagttctacaaacgggcagccctatcagcgtctaacttaccaagg 26066763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 24167149 - 24167100
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatg 91  Q
    |||||||||||||| ||||||||| |  ||||||||||||| ||||||||    
T  24167149 gtaattgaaacatagacttaagttggcattcctaaatttccaaaggtatg 24167100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 22565829 - 22565658
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||| ||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||   | ||||||||| |||||| || |||||||||||| |    
T  22565829 cacacggtgatccttacatgtgggatttatctcactcagg-gtaattcaaacataaacttagtgtagagttcctagatttccaaaagtatgatggctagt 22565731  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaac 173  Q
    ||||   ||||||| |||||||||| ||||||||| ||||||  ||||| || |||||||||||||| |||||    
T  22565730 gttcccgaaggttctctcatctatgaatcttagaagtacatagaacactatctctcttagtagttctacaaac 22565658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 23645424 - 23645253
Alignment:
Q  8 tgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcata 107  Q
    ||||| ||| ||||||| ||||| ||||||||| ||| |||||||||||||||  | | ||||||||| |||||| ||| ||||||||    |||||||     
T  23645424 tgatccttagatgtgggctttatgtcactcaggcgtatttgaaacataaacttggggtagagttcctagatttccaaagatatgatgggcggtgttcatg 23645325  T
Q  108 aaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcag 179  Q
    ||||||| |||||||||| |||||| || ||||||| |||||||| |||||||||||||| ||||| |||||    
T  23645324 aaggttctctcatctatgaatcttataagtacataacacactctctctcttagtagttctacaaacaggcag 23645253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 9726477 - 9726623
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaaataca 140  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||||| |  | | ||||| |||||||||| || |||||| ||||||||||||||    
T  9726477 gtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatgacttcccagtgttcctaaaggttccatcgtctatgaatcttagaaataca 9726576  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatca 187  Q
    ||| ||||||||  |||   ||||||| |||||||||||||||||||    
T  9726577 taacacactctcgttctcgatagttctacaaacgggcagccctatca 9726623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 2587177 - 2587340
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacat 141  Q
    |||||||||||||||||||||||| | |||||||||||||  |||||||| |||  | ||||| |||| |||   ||||||||| ||||||| | |||||    
T  2587177 gtaattgaaacataaacttaagttggcgttcctaaatttcataaggtatggtggtcagtgttcctaaatgttttttcatctatgaatcttaggagtacat 2587276  T
Q  142 aagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |  ||||||||||||| ||||||||| ||||| | || |||||||| | ||||| |||||||||    
T  2587277 agcacactctccctctcagtagttctccaaacagacaaccctatcagcgtctaccttaccaagg 2587340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 14725842 - 14726046
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||||| |||||||||| | |||||| |  | | |||||| ||||||||||||||||||||| || ||||||||| |||||| |||||||| || | | |    
T  14725842 cacatgatgatctttacttctggggtcttacaccctcaggggtaattgaaacataaacttaaattagagttcctagatttccaaaggtatggtgaccagt 14725941  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    |||  | ||||||| |||||||||  || |||||| ||||||| ||| ||| |||||  ||| |||| |||||| |||||| ||||| ||| ||| ||||    
T  14725942 gtttctgaaggttctctcatctatagattttagaagtacataacacattcttcctctcggtaattctacaaacgagcagccttatcaacatttaccttac 14726041  T
Q  201 caagg 205  Q
    |||||    
T  14726042 caagg 14726046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 24216008 - 24216134
Alignment:
Q  45 attgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacataag 144  Q
    ||||||||||||| | ||||| | |||||||||||||| ||||||| |||||  |||||| ||||||||  | |||||||| ||||||||| |||| |      
T  24216008 attgaaacataaattaaagttggtgttcctaaatttccaaaggtataatggc-catgttcctaaaggttttcacatctatgaatcttagaagtacacatc 24216106  T
Q  145 acactctccctcttagtagttctgcaaa 172  Q
    || ||||||||||  |||||||| ||||    
T  24216107 actctctccctctcggtagttctacaaa 24216134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 4340324 - 4340381
Alignment:
Q  148 ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||| |||||||||||||| |||||||| | |||||||| | ||||| |||||||||    
T  4340324 ctctcactcttagtagttctacaaacgggaaaccctatcagcttctaccttaccaagg 4340381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 14078982 - 14078933
Alignment:
Q  156 cttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||||||| |||||  |||||||||||| ||||||| |||||||||    
T  14078982 cttagtagttctccaaacaagcagccctatcagcatctaccttaccaagg 14078933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 20144615 - 20144559
Alignment:
Q  148 ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||||||||||||||  ||||||| ||||||||| || ||||| |||||||||    
T  20144615 ctctccctcttagtagttctaaaaacgggaagccctatc-tcgtctaccttaccaagg 20144559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 22188224 - 22188280
Alignment:
Q  148 ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||||||||||||||  ||||||| ||||||||| || ||||| |||||||||    
T  22188224 ctctccctcttagtagttctaaaaacgggaagccctatc-tcgtctaccttaccaagg 22188280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 15466957 - 15467009
Alignment:
Q  153 cctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||| || ||||| ||||||||||||||||||| | ||||| |||||||||    
T  15466957 cctctttgttgttctacaaacgggcagccctatcagcgtctaccttaccaagg 15467009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 22850017 - 22849957
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||||||||  |||||||| ||||||||||| |||||||   ||||| |||||||||    
T  22850017 acactctccctctcggtagttctacaaacgggcagtcctatcagtgtctaccttaccaagg 22849957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 17977073 - 17977261
Alignment:
Q  36 tcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaa 135  Q
    ||||| ||||||||||||||||||||| || || ||||||||||||| |||||||| |||||| ||||| ||||||||| |  ||||||| |||||||||    
T  17977073 tcaggggtaattgaaacataaacttaaattggatttcctaaatttccaaaggtatggtggctagtgttcgtaaaggttctccaatctatgaatcttagaa 17977172  T
Q  136 atacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg---aaagagaatggagtta 221  Q
     ||||||  ||||| |||||||  |||||| | |||||||| |||||||||| | ||| | |||||||||   || |||||||||||||    
T  17977173 gtacatagcacactatccctctcggtagttttacaaacgggaagccctatcagcgtctgccttaccaaggtgcaaggagaatggagtta 17977261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 17965535 - 17965642
Alignment:
Q  98 aatgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactt 197  Q
    ||||||| ||||||| |||| ||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||| | ||||||||||| | ||||| |    
T  17965535 aatgttcctaaaggtacccttatctatgaatcttagaagtacataacacactctccctcttagtaattctacaaacagacagccctatcagcgtctacct 17965634  T
Q  198 taccaagg 205  Q
    ||||||||    
T  17965635 taccaagg 17965642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 24905100 - 24905263
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacat 141  Q
    ||||||||||||||||||||| || || ||||||||||||  ||||||||||| | | ||||  | ||||||| ||||| |||| |||| |||| |||||    
T  24905100 gtaattgaaacataaacttaaattagaattcctaaatttctaaaggtatgatgaccattgttactcaaggttctctcatatatgaatctaagaagtacat 24905199  T
Q  142 aagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |  |||||||  ||||  |||||||| ||||| |||||||||||||   ||||| |||||||||    
T  24905200 agaacactctatctctcggtagttctacaaacaggcagccctatcagtgtctaccttaccaagg 24905263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 5052550 - 5052391
Alignment:
Q  44 aattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacataa 143  Q
    |||| |||||||||||| | || |||||||||||||||| ||| |||| |||  ||||||| ||| ||||| ||||  | ||  |||||||| |||||||    
T  5052550 aattaaaacataaacttgaattagagttcctaaatttcccaagttatggtggtcaatgttcctaatggttctctca--tttgagtcttagaagtacataa 5052453  T
Q  144 gacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
     |||||||||| ||  |||||||| ||||| |||| |||||||| ||||||| |||||||||    
T  5052452 cacactctcccactctgtagttctacaaacaggcaaccctatcagcatctaccttaccaagg 5052391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 30121775 - 30121655
Alignment:
Q  46 ttgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacataaga 145  Q
    |||||||||| |||||| || | |||||||||||| | ||||||||||| | ||||||| ||||||||  | |||||||| || |||| | ||||||| |    
T  30121775 ttgaaacatagacttaaattggcgttcctaaattttcaaaggtatgatgaccaatgttcttaaaggttttcccatctatgaattttaggagtacataaca 30121676  T
Q  146 cactctccctcttagtagttc 166  Q
    ||||||||||||  |||||||    
T  30121675 cactctccctctcggtagttc 30121655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 5855623 - 5855699
Alignment:
Q  102 ttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggca 178  Q
    ||||||||||| |   ||| |||| |||||||||  |||||| ||||||||||||| ||||||||| ||||||||||    
T  5855623 ttcataaaggtccgaccatttatgaatcttagaagcacataacacactctccctctcagtagttctacaaacgggca 5855699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 15064936 - 15064830
Alignment:
Q  96 ctaatgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctac 195  Q
    ||||||||| |||||||   | |||||||| ||| |||||  |||||  |||||||||||||  |||||||| ||||| ||||||| ||||| | |||||    
T  15064936 ctaatgttcttaaaggtctgcccatctatgaatcatagaagcacatagcacactctccctctcggtagttctacaaacaggcagccttatcagcgtctac 15064837  T
Q  196 tttacca 202  Q
     ||||||    
T  15064836 cttacca 15064830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 6885539 - 6885599
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||| ||| ||||||||| ||||||||||||| ||| | | ||||| |||||||||    
T  6885539 acactctccttctcagtagttctacaaacgggcagccttattagcgtctaccttaccaagg 6885599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 26291501 - 26291703
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    ||||| |||||| |||| |||||||| |  ||  || ||| |||||| |||||||||||||| || |||||||||||||||| |||||||| |||  | |    
T  26291501 cacatagtgatccttacgtgtggggtcttactaccttaggggtaattaaaacataaacttaaattagagttcctaaatttccaaaggtatggtggtcagt 26291600  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    |||| ||||||||| |||||||||| ||||||||| ||||||| ||||||||| |||  |||||| | ||||| | ||||||||| | | ||||| ||||    
T  26291601 gttcctaaaggttctctcatctatgaatcttagaagtacataacacactctccttctcggtagttttacaaactgacagccctatgagcgtctaccttac 26291700  T
Q  201 caa 203  Q
    |||    
T  26291701 caa 26291703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 27418687 - 27418826
Alignment:
Q  37 caggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaa 135  Q
    |||| ||||||||||||||||||||| || |||||||||||||||| ||||||||| |  ||| ||||  |||| ||||||||||||||| |||||||||    
T  27418687 caggggtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatgacttcctagtgtttctaaatgttccctcatctatgaatcttagaa 27418786  T
Q  136 atacataagacactctccctcttagtagttctgcaaacgg 175  Q
    |||||||| ||| ||| ||||| ||||||| | |||||||    
T  27418787 atacataacacattcttcctctcagtagttgtacaaacgg 27418826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 27419833 - 27419972
Alignment:
Q  37 caggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaa 135  Q
    |||| ||||||||||||||||||||| || |||||||||||||||| ||||||||| |  ||| ||||  |||| ||||||||||||||| |||||||||    
T  27419833 caggggtaattgaaacataaacttaaattagagttcctaaatttccaaaggtatgacttcctagtgtttctaaatgttccctcatctatgaatcttagaa 27419932  T
Q  136 atacataagacactctccctcttagtagttctgcaaacgg 175  Q
    |||||||| ||| ||| ||||| ||||||| | |||||||    
T  27419933 atacataacacattcttcctctcagtagttgtacaaacgg 27419972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 45553601 - 45553764
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacat 141  Q
    |||||||||||||||||||||    | |||||||||||||| |||||||| |||| | ||||| ||||||||  | |||||||| ||||||| | | |||    
T  45553601 gtaattgaaacataaacttaatacggcgttcctaaatttccaaaggtatggtggccagtgttcctaaaggttttcccatctatgaatcttaggagtgcat 45553700  T
Q  142 aagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    || ||||||| |||||| |||||||| |||| |||||||||||||| |  |||| |||||||||    
T  45553701 aacacactcttcctcttggtagttctacaaatgggcagccctatcagcgactaccttaccaagg 45553764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 205
Target Start/End: Original strand, 25939603 - 25939767
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggct---aatgttcataaaggttccctcatctatgcatcttagaaata 138  Q
    ||||||||||||||||||||| || |  ||||||||||||| ||||||||  | ||   ||||||| |||||||||||||||||||| |||||| ||  |    
T  25939603 gtaattgaaacataaacttaaattagcattcctaaatttccaaaggtatg--gcctcccaatgttcctaaaggttccctcatctatgaatcttaaaagaa 25939700  T
Q  139 cataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||  |||||||||||||  |||||||| |||||||| || ||||||| | ||||| |||||||||    
T  25939701 catagaacactctccctctcggtagttctacaaacggggagacctatcagcgtctaccttaccaagg 25939767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 21078286 - 21078197
Alignment:
Q  7 gtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggc 96  Q
    |||||| ||||||||||||| |  ||| ||  || |||||||||||||||||||||||| | |||||||||||||| |||||||| ||||    
T  21078286 gtgatccttacatgtggggtcttactccctttggggtaattgaaacataaacttaagtttgtgttcctaaatttccaaaggtatggtggc 21078197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 45621469 - 45621382
Alignment:
Q  118 catctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||| | ||||||| ||||||||||| ||| |||||| |||||||| ||||||| || |||||||| | ||||| |||||||||    
T  45621469 catctatgaaccttagaagtacataagacaatcttcctcttggtagttctacaaacggacaaccctatcaacgtctaccttaccaagg 45621382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 22568190 - 22568241
Alignment:
Q  154 ctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||||||||| ||||||||||||||||||| | ||||| |||||||||    
T  22568190 ctcttagtagttctacaaacgggcagccctatcagcgtctaccttaccaagg 22568241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 25348568 - 25348631
Alignment:
Q  138 acataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttacc 201  Q
    |||||| ||||||||||||| ||||||||| |||||| |||||||||||| | ||||| |||||    
T  25348568 acataacacactctccctctcagtagttctacaaacgagcagccctatcagcgtctaccttacc 25348631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 29027971 - 29028024
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatgg 95  Q
    |||||||||||||| |||||| || | |||||||||||||| ||||||||||||    
T  29027971 gtaattgaaacatagacttaaattggcgttcctaaatttccaaaggtatgatgg 29028024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 19199686 - 19199626
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||| ||| ||||||||| |||| |||||||||||||| | ||||| |||||||||    
T  19199686 acactctccttctcagtagttctacaaatgggcagccctatcagcgtctaccttaccaagg 19199626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 23011267 - 23011215
Alignment:
Q  153 cctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||| |||||||| |||| |||||||||||||| | ||||||| |||||||    
T  23011267 cctcttggtagttctacaaatgggcagccctatcagcgtctacttcaccaagg 23011215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 15299439 - 15299637
Alignment:
Q  7 gtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcat 106  Q
    |||||| ||||||||||||| |  ||| |||| |  |||||| ||||||||||||| || |||||||||||||||| |||||||| | |||| ||||  |    
T  15299439 gtgatccttacatgtggggtcttactccctcaaggataattggaacataaacttaaattagagttcctaaatttccaaaggtatgttagctagtgtttct 15299538  T
Q  107 aaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||| ||||||||||  |||||||| |||| || |||| ||||| ||  |||||||| ||||| | || |||||||||| ||||| |||||||||    
T  15299539 aaaggttctctcatctatgagtcttagaagtacacaacacaccctcccactcggtagttctacaaacagacaaccctatcatcgtctaccttaccaagg 15299637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22620698 - 22620920
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||| ||||||| |||| |||||||||||||||||||| | ||||||| |||||||||||| | | ||||||||| |||||| ||||||||| ||||| |    
T  22620698 cacaaggtgatccttacgtgtggggtttatctcactcaagcgtaattgcaacataaacttagggtagagttcctagatttccaaaggtatgaaggctagt 22620797  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    |||| | ||||||| || |||| || ||||||||| ||||||  ||| | |  |||||| ||||||| ||||| | || |||||||  | ||||| | ||    
T  22620798 gttcctgaaggttctcttatctctgaatcttagaagtacatatcacaatatttctcttaatagttctacaaacagacaaccctatccgcgtctacctaac 22620897  T
Q  201 caaggaaagagaatggagttattg 224  Q
     |||| || |||||||||||||||    
T  22620898 taagggaa-agaatggagttattg 22620920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 34481413 - 34481558
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacat 141  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||| | ||||||| ||||||||  | ||| |||| ||||||| | |||||    
T  34481413 gtaattgaaacataaacttaagttggcgttcctaaatttccaaaggtatgatgcccaatgttcctaaaggttttcccatatatgaatcttaggagtacat 34481512  T
Q  142 aagacactctccctcttagtagttctgcaaacgggcagccctatca 187  Q
    |  |||   |||||||  |||||||| ||||| || ||||||||||    
T  34481513 agcacatcatccctctcggtagttctacaaacaggtagccctatca 34481558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 16787412 - 16787210
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||| ||||||| ||| ||||||||| |  ||| ||| || |||||||||||||| ||||||||| | |||| ||||||||| ||||||| ||||| | |    
T  16787412 cacacggtgatccttatatgtggggtcttactccctcgggggtaattgaaacatagacttaagttggtgttcataaatttccaaaggtatcatggc-agt 16787314  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    |||| ||||| ||  | || ||||| ||||||| | ||||||  ||| ||| |||||  |||||| | ||||||||||||||||||| | ||||| ||||    
T  16787313 gttcctaaagattttcccagctatgaatcttaggagtacatagcacattct-cctctcggtagttatacaaacgggcagccctatcagcgtctaccttac 16787215  T
Q  201 caagg 205  Q
    |||||    
T  16787214 caagg 16787210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 32382655 - 32382531
Alignment:
Q  19 tgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttccta-aatttccgaaggtatgatggctaatgttcataaaggttccct 117  Q
    |||||||||||||||||||| | |||||||||||||||||||  | | ||||||||| | ||| | ||||||||||||| | ||||| | ||||||| ||    
T  32382655 tgtggggtttatctcactcatgggtaattgaaacataaacttcgggtagagttcctagatttttcaaaggtatgatggccagtgttcttgaaggttctct 32382556  T
Q  118 catctatgcatcttagaaatacata 142  Q
     || |||| ||||||||| ||||||    
T  32382555 aatatatgaatcttagaagtacata 32382531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 44795950 - 44796010
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||| | ||||| |||||||||    
T  44795950 acactctccctctcagtagttctacaaacgggcaatcctatcaacgtctaccttaccaagg 44796010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 24281865 - 24281918
Alignment:
Q  151 tccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaag 204  Q
    |||| ||| |||||||| ||||||||||||||||||| | ||||| ||||||||    
T  24281865 tcccccttggtagttctacaaacgggcagccctatcagcgtctacattaccaag 24281918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 26021326 - 26021359
Alignment:
Q  154 ctcttagtagttctgcaaacgggcagccctatca 187  Q
    |||||||||||||| |||||||||||||||||||    
T  26021326 ctcttagtagttctacaaacgggcagccctatca 26021359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 821147 - 820989
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaaataca 140  Q
    ||||||||||||||||||||| || |||||| ||||||||| |||||| || |  | ||||||| |||||||||| |||| |||| ||||||||| ||||    
T  821147 gtaattgaaacataaacttaaattagagttcgtaaatttccaaaggtacgacttcccaatgttcctaaaggttcc-tcatatatgaatcttagaagtaca 821049  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    ||  |||||||||||||  |||||||| |||||||| ||| |||||| | ||||| ||||    
T  821048 tagcacactctccctctcggtagttctacaaacgggaagctctatcagcgtctaccttac 820989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 43 - 205
Target Start/End: Original strand, 6290290 - 6290452
Alignment:
Q  43 taattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacata 142  Q
    |||||||||||||| | ||| ||  ||||||||||||||| |||||||| |  ||| ||||| ||||||||| |||||||||| ||||||||| | ||||    
T  6290290 taattgaaacataatcctaaattaaagttcctaaatttccaaaggtatggtttctagtgttcctaaaggttctctcatctatgaatcttagaagtgcata 6290389  T
Q  143 agacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    | | ||||||| |||| |||||||| ||||| | || | |||||| | ||||| |||||||||    
T  6290390 acatactctccttcttggtagttctacaaacagacatctctatcagcgtctaccttaccaagg 6290452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 20398090 - 20398172
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatcta 123  Q
    |||||||||||||| |||||| || |||||||||||||||| ||||||||| |  ||| ||||| ||||||||||||||||||    
T  20398090 gtaattgaaacatatacttaaattagagttcctaaatttccaaaggtatgacttcctagtgttcctaaaggttccctcatcta 20398172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 19171367 - 19171318
Alignment:
Q  156 cttagtagttctgcaaacgggcagccctatcatcatctactttaccaagga 206  Q
    |||||| ||||| |||||||||||||||||| |||||||| ||||||||||    
T  19171367 cttagttgttctacaaacgggcagccctatc-tcatctaccttaccaagga 19171318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 13907882 - 13907813
Alignment:
Q  44 aattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggtt 113  Q
    ||||||||||||||||||| || |||||||||||| ||| | |||||| |||| | | ||| ||||||||    
T  13907882 aattgaaacataaacttaaattggagttcctaaatatccaatggtatggtggccagttttcctaaaggtt 13907813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 22245736 - 22245914
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaat 100  Q
    |||||||||||| |||| |||||||| |  |||  | ||| ||||||||||| || | |||| || | |||||||||||| | ||| ||||||||  |||    
T  22245736 cacatggtgatccttacgtgtggggtcttactccgttaggggtaattgaaacttagatttaaattggcgttcctaaatttacaaagttatgatggtcaat 22245835  T
Q  101 gttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatca 187  Q
    |||| ||||||||  | |||||||        ||| ||||||  ||||| | ||||| ||||||||| |||||||| ||||||||||    
T  22245836 gttcctaaaggtttacccatctat--------gaagtacatagcacacttttcctctcagtagttctacaaacgggtagccctatca 22245914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 3115937 - 3115877
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    |||||||||||||  |||||||| ||||||||||||| |||||   ||||| |||||||||    
T  3115937 acactctccctctcggtagttctacaaacgggcagccttatcagtgtctaccttaccaagg 3115877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 8144193 - 8144233
Alignment:
Q  147 actctccctcttagtagttctgcaaacgggcagccctatca 187  Q
    |||||||||||  |||||||| |||||||||||||||||||    
T  8144193 actctccctctcggtagttctacaaacgggcagccctatca 8144233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0672 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0672
Description:

Target: scaffold0672; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 4349 - 4506
Alignment:
Q  49 aaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaaatacataagaca 147  Q
    |||||||||||||| ||  ||||| ||||||||| ||||||||| | || | ||||  |||||||||   |||||||||||||||||| ||||||  |||    
T  4349 aaacataaacttaaattgaagttcgtaaatttccaaaggtatgactagcaagtgttactaaaggttctagcatctatgcatcttagaagtacatagcaca 4448  T
Q  148 ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||||  |||||||| || |||||||||||||| | ||||||| ||| |||||    
T  4449 ctctccctctcggtagttctacacacgggcagccctattagcatctaccttatcaagg 4506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 262 - 77
Alignment:
Q  1 cacatggtgatctttacatgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaa 99  Q
    |||||||||||| |||| ||| |||| |  |||||||||  ||||||||||||||||| ||| ||  | ||||||||||| |  |||||||| |  | |     
T  262 cacatggtgatccttacgtgtagggtcttactcactcagtggtaattgaaacataaacataaattacaattcctaaattttcataggtatgacttcccag 163  T
Q  100 tgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctat 185  Q
    ||||| ||||| |||||||||||||| ||||||||| ||||||  |||||| ||||||  |||||||| |||||||| ||||||||    
T  162 tgttcctaaagtttccctcatctatgaatcttagaagtacatagcacactccccctctcggtagttctacaaacgggaagccctat 77  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 203
Target Start/End: Complemental strand, 12839413 - 12839258
Alignment:
Q  49 aaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaaatacataagaca 147  Q
    |||||||||||||| || || ||||||||||| | ||||||||| |  | | ||||| |||||||| |||||||| |  ||||||||| ||||||| |||    
T  12839413 aaacataaacttaaattagatttcctaaattttcaaaggtatgacttcccagtgttcctaaaggtttcctcatctgtaaatcttagaagtacataacaca 12839314  T
Q  148 ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaa 203  Q
    ||||||||||  |||||||| |||||||||| |||||| | | ||||| |||||||    
T  12839313 ctctccctctcggtagttctacaaacgggcatccctataagcgtctaccttaccaa 12839258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 187
Target Start/End: Complemental strand, 9264638 - 9264494
Alignment:
Q  43 taattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaaatacata 142  Q
    ||||||||||||| |||||| || | |||||||||||||| ||| |||  | |||| ||||| ||||| ||  ||||||||||  |||||||| ||||||    
T  9264638 taattgaaacatatacttaaattggcgttcctaaatttccaaagatatcgttgctagtgttcctaaagtttttctcatctatgagtcttagaagtacata 9264539  T
Q  143 agacactctccctcttagtagttctgcaaacgggcagccctatca 187  Q
      ||| | |||||||| ||||||||  ||||||||| ||||||||    
T  9264538 gcacattttccctcttggtagttctataaacgggcaaccctatca 9264494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 25120747 - 25120687
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||    
T  25120747 acactctccctctcagtagttctacaaacgggcagccctatcagcatctaccttaccaagg 25120687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 4215082 - 4215003
Alignment:
Q  145 acactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaaggaaagagaatggagttattg 224  Q
    |||||||| |||||||||||||| |||||| |||  ||||||| | ||||| |||| |||||||||||||||||||||||    
T  4215082 acactctctctcttagtagttctacaaacgtgcaatcctatcaccgtctaccttactaaggaaagagaatggagttattg 4215003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 200
Target Start/End: Original strand, 9053136 - 9053295
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatga-tggctaatgttcataaaggttccctcatctatgcatcttagaaataca 140  Q
    |||||||||||||| |||||| || | |||||||||||| | ||||||||  |  | ||||||| |||||||||  |||||||||   ||||||  || |    
T  9053136 gtaattgaaacatagacttaaattagcgttcctaaattttcaaaggtatggcttcccaatgttcctaaaggttctttcatctatgagccttagatgtaaa 9053235  T
Q  141 taagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttac 200  Q
    ||  || ||||||||||| |||||||| ||||||||||||||||||| | ||||| ||||    
T  9053236 tagcacgctctccctcttggtagttctacaaacgggcagccctatcagcgtctaccttac 9053295  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 11700224 - 11700085
Alignment:
Q  17 catgtggggtttatctcactcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccc 116  Q
    |||||||||| |  ||| ||| || ||| ||||||||||||||||| ||  | ||||||||||||| |||||||| |||| ||||||| ||||||||| |    
T  11700224 catgtggggtcttactccctcgggggtagttgaaacataaacttaaattgaatttcctaaatttccaaaggtatggtggccaatgttcctaaaggttctc 11700125  T
Q  117 tcatctatgcatcttagaaatacataagacactctccctc 156  Q
      ||||| | ||||||||| | ||||  ||||||||||||    
T  11700124 ctatctacgaatcttagaagtgcatagcacactctccctc 11700085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 17672570 - 17672627
Alignment:
Q  148 ctctccctcttagtagttctgcaaacgggcagccctatcatcatctactttaccaagg 205  Q
    ||||| |||||||||||||| ||||||||||||||||||| | ||||| |||||||||    
T  17672570 ctctcactcttagtagttctacaaacgggcagccctatcagcgtctaccttaccaagg 17672627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 1833140 - 1833037
Alignment:
Q  103 tcataaaggttccctcatctat-gcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctactttacc 201  Q
    ||||||||||||||||| |||| | ||||| ||| ||||||  |||||||||||||   ||||| | ||||||||||||||||||| | ||||| ||| |    
T  1833140 tcataaaggttccctcagctatcgaatctttgaagtacatagcacactctccctctcgctagttttacaaacgggcagccctatcagcgtctaccttaac 1833041  T
Q  202 aagg 205  Q
    ||||    
T  1833040 aagg 1833037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 30600363 - 30600418
Alignment:
Q  36 tcaggtgtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatg 91  Q
    ||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||||    
T  30600363 tcaggggtaattgaaacatagacttaagttggcgttcctaaatttccaaaggtatg 30600418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 135
Target Start/End: Complemental strand, 11520760 - 11520667
Alignment:
Q  42 gtaattgaaacataaacttaagttcgagttcctaaatttccgaaggtatgatggctaatgttcataaaggttccctcatctatgcatcttagaa 135  Q
    |||||||||| |||||| ||| || || ||||||||||||| |||||||||   ||| | ||| ||||| |||||||||||||  |||||||||    
T  11520760 gtaattgaaatataaacataaattagatttcctaaatttccaaaggtatgacttctagtattcgtaaagattccctcatctataaatcttagaa 11520667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 22526797 - 22526905
Alignment:
Q  97 taatgttcataaaggttccctcatctatgcatcttagaaatacataagacactctccctcttagtagttctgcaaacgggcagccctatcatcatctact 196  Q
    |||| ||| ||||||||| || |||||||||||||||||  |||||| |||||||| |  | ||| ||| | |||||||||||| ||||||   |||||     
T  22526797 taatcttcttaaaggttcgctaatctatgcatcttagaagcacataacacactctctcaatcagttgttttacaaacgggcagctctatcagtgtctacc 22526896  T
Q  197 ttaccaagg 205  Q
    |||||||||    
T  22526897 ttaccaagg 22526905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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