View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17198_high_5 (Length: 629)
Name: NF17198_high_5
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_5 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 525; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Complemental strand, 1903665 - 1903054
Alignment:
| Q |
18 |
aaattttgatatcaattttgatgtcaaaatatatagttttgctgactatcttaccgaacaaacaacggagacgagtgagagattcagtcctattttccaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1903665 |
aaattttgatatcaattttgatgtcaaaatatatagttttgctgactatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaa |
1903566 |
T |
|
| Q |
118 |
gcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1903565 |
gcacttgcttttggaactgataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctt |
1903466 |
T |
|
| Q |
218 |
tcaagatatgtacctgtgaaatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa-------tgaaaaaatatttcat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1903465 |
tcaagatatgtacctgtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatatttcat |
1903366 |
T |
|
| Q |
311 |
tgtaaggaagccaattgtgacacattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1903365 |
tgtaaggaagccaattgtgacacattctagtaaatactatgcagcaccga----tacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtt |
1903270 |
T |
|
| Q |
411 |
tggcacgtgctggtgtcagacatagacatgcgtgttacatccaatcttttccatttcatcaaattaatattggcgtctatgtcctagtgtcagtgttata |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
1903269 |
tggcacgtgctggtgtcagacatagacatgcatgttacatccaatcttttccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttata |
1903170 |
T |
|
| Q |
511 |
tctggtgttcgtgactgtgtcaatattcatatactttatggactttaatttttaatgtataatatctctcattttgcataatactaaccctaccctacct |
610 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1903169 |
tatggtgttcgtgactgtgtcaatattcatatactttatggactttaatttttaatgtataatatctctcattttgcataatactaaccctaccctacct |
1903070 |
T |
|
| Q |
611 |
accagtataatctacc |
626 |
Q |
| |
|
||||||| ||| |||| |
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|
| T |
1903069 |
accagtaaaatgtacc |
1903054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Complemental strand, 1907898 - 1907287
Alignment:
| Q |
18 |
aaattttgatatcaattttgatgtcaaaatatatagttttgctgactatcttaccgaacaaacaacggagacgagtgagagattcagtcctattttccaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1907898 |
aaattttgatatcaattttgatgtcaaaatatatagttttgctgactatcttacagaacaaacaacggagacgagtgagagattcaatcctattttccaa |
1907799 |
T |
|
| Q |
118 |
gcacttgcatttggaactgataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1907798 |
gcacttgcttttggaactgataacaaagctacaactatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctt |
1907699 |
T |
|
| Q |
218 |
tcaagatatgtacctgtgaaatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa-------tgaaaaaatatttcat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1907698 |
tcaagatatgtacctgtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatatttcat |
1907599 |
T |
|
| Q |
311 |
tgtaaggaagccaattgtgacacattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1907598 |
tgtaaggaagccaattgtgacacattctagtaaatactatgcagcaccga----tacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtt |
1907503 |
T |
|
| Q |
411 |
tggcacgtgctggtgtcagacatagacatgcgtgttacatccaatcttttccatttcatcaaattaatattggcgtctatgtcctagtgtcagtgttata |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
1907502 |
tggcacgtgctggtgtcagacatagacatgcatgttacatccaatcttttccatttcatcaaattattattgatgtctatgtcctagtgtcagtgttata |
1907403 |
T |
|
| Q |
511 |
tctggtgttcgtgactgtgtcaatattcatatactttatggactttaatttttaatgtataatatctctcattttgcataatactaaccctaccctacct |
610 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1907402 |
tatggtgttcgtgactgtgtcaatattcatatactttatggactttaatttttaatgtataatatctctcattttgcataatactaaccctaccctacct |
1907303 |
T |
|
| Q |
611 |
accagtataatctacc |
626 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
1907302 |
accagtaaaatgtacc |
1907287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 51 - 294
Target Start/End: Complemental strand, 1898331 - 1898089
Alignment:
| Q |
51 |
tagttttgctgactatcttaccgaacaaacaacggagacgagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctaca |
150 |
Q |
| |
|
||||||||| || |||||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1898331 |
tagttttgc-gagtatcttacagaagaaacaatggagataagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctaca |
1898233 |
T |
|
| Q |
151 |
actatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaataaacgaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
1898232 |
actatagatatgatggtggcagttgtggtgtaaagcaaggttagagttagttcatctgggaactctttcatgatatgtacctgtgaaatgaataaaggaa |
1898133 |
T |
|
| Q |
251 |
cttaaacttttcagtactaaaattttgatgatctcattaaataa |
294 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1898132 |
ctgaaacttttcagtactaaaattttgatgatcccattaaataa |
1898089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 51 - 242
Target Start/End: Complemental strand, 1913707 - 1913516
Alignment:
| Q |
51 |
tagttttgctgactatcttaccgaacaaacaacggagacgagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctaca |
150 |
Q |
| |
|
||||||||| | |||||||| ||| |||||| ||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1913707 |
tagttttgcagtgtatcttacagaagaaacaatggagataagtgagagatttagtcctattatccaagcacttgaatttggaactgataacaaagctaca |
1913608 |
T |
|
| Q |
151 |
actatagatatgatggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaa |
242 |
Q |
| |
|
||| |||||||||| ||||||||| |||| || | ||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1913607 |
actgtagatatgattgtggcagttatggaatatatcaagactaaagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaa |
1913516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 64 - 294
Target Start/End: Complemental strand, 1888142 - 1887912
Alignment:
| Q |
64 |
tatcttaccgaacaaacaacggagacgagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatga |
163 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| || |
|
|
| T |
1888142 |
tatcttacggaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgataaga |
1888043 |
T |
|
| Q |
164 |
tggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaataaacgaacttaaacttttca |
263 |
Q |
| |
|
|||||||||| ||||||||| ||| | || ||| |||||||||||||||||||||| | |||||||| ||||||||||| | |||| ||||| || | |
|
|
| T |
1888042 |
tggtggcagtaatggagtaaagcaagactaatgttggttcatctgggaactctttcaaaacatgtacctatgaaatgaatatagaaactaaaactcttta |
1887943 |
T |
|
| Q |
264 |
gtactaaaattttgatgatctcattaaataa |
294 |
Q |
| |
|
| ||||||||| | | | ||||||||||||| |
|
|
| T |
1887942 |
gaactaaaattattaagctctcattaaataa |
1887912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 64 - 244
Target Start/End: Complemental strand, 1892990 - 1892810
Alignment:
| Q |
64 |
tatcttaccgaacaaacaacggagacgagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatga |
163 |
Q |
| |
|
|||||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
1892990 |
tatcttacagaagaaacaatggagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgatatga |
1892891 |
T |
|
| Q |
164 |
tggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaata |
244 |
Q |
| |
|
|||||||||| ||| ||| ||||| | || ||||| ||| || |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1892890 |
tggtggcagtaatggtgtataacaagactaaagttacttcgtcagggaactctttcaagatatgcacctgtgaaatgaata |
1892810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 64 - 244
Target Start/End: Complemental strand, 1880846 - 1880666
Alignment:
| Q |
64 |
tatcttaccgaacaaacaacggagacgagtgagagattcagtcctattttccaagcacttgcatttggaactgataacaaagctacaactatagatatga |
163 |
Q |
| |
|
|||||||| ||| |||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
1880846 |
tatcttacagaagaaactatagagatgagtgagagatttagtcctattttccaagcacttgcatttggaactgataacaatgctacaactgttgatatga |
1880747 |
T |
|
| Q |
164 |
tggtggcagttgtggagtaaaacaatattatagttagttcatctgggaactctttcaagatatgtacctgtgaaatgaata |
244 |
Q |
| |
|
|||| |||||| ||| ||| ||||| | || ||||| |||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
1880746 |
tggtagcagttatggtgtataacaagactaaagttacttcatctgagaactctttcaagatatgcacctgtgaaatgaata |
1880666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 332 - 466
Target Start/End: Complemental strand, 1898006 - 1897876
Alignment:
| Q |
332 |
acattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagac |
431 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||| |||||| |||||||||||| ||||| | || ||| ||||||||||||||||| ||| |
|
|
| T |
1898006 |
acattctagtaaatactatgtagcactga----tacttcatattgaaaacgtgttcagtgtccaacatgtatcgatgtctggcacgtgctggtgtcggac |
1897911 |
T |
|
| Q |
432 |
atagacatgcgtgttacatccaatcttttccattt |
466 |
Q |
| |
|
|||||||||| ||||| || ||||| ||||||||| |
|
|
| T |
1897910 |
atagacatgcatgttaaattcaatcatttccattt |
1897876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 485 - 534
Target Start/End: Complemental strand, 1897676 - 1897627
Alignment:
| Q |
485 |
gtctatgtcctagtgtcagtgttatatctggtgttcgtgactgtgtcaat |
534 |
Q |
| |
|
||||| || ||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
1897676 |
gtctacgtgctagtgtcagtattatgtctggtgttcgtgactgtgtcaat |
1897627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 552 - 604
Target Start/End: Complemental strand, 1892189 - 1892137
Alignment:
| Q |
552 |
actttaatttttaatgtataatatctctcattttgcataatactaaccctacc |
604 |
Q |
| |
|
|||| |||| |||| |||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
1892189 |
acttcaattcttaaagtataacgtctctcattttgcataatactaatcctacc |
1892137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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