View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_high_7 (Length: 555)
Name: NF17198_high_7
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 20 - 538
Target Start/End: Original strand, 21482084 - 21482601
Alignment:
| Q |
20 |
atgaataagaagaataactcaccggtgttctctagcaaatacatcctgcttttgttgttaggccaatatctgatgctccaagaagaaataatcaaaagat |
119 |
Q |
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| T |
21482084 |
atgaataagaagaataactcaccggtgttctccagcaaatacatcctgcttttgttgttaggccaatatctgatgctccaagaagaaataatcaaaagat |
21482183 |
T |
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| Q |
120 |
aaaattttagtcgcaatgtatcatcatcataatttatgaacataaaaaacaaaatgatgaagttaaatttgtccatgaaaatttgcttacctataacgca |
219 |
Q |
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| T |
21482184 |
aaaattttagtcccaatgtatcatcatcataatttataaacataaaaaacaaaatgatgaagttaaatttgtccatgaaaatttgcttacctataacgca |
21482283 |
T |
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| Q |
220 |
tattccaaactcgagaagttccaatgtcttccattgtaatcgaaattccatctctcgcctccaattctggcaaatgtgtttctgcctctttctgatgttt |
319 |
Q |
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| T |
21482284 |
tattccaaactcgagaagttccaatgtcttccattgtaatcgaaattccatctcttgcctccaattctggcaaatgtgtttctgcctctttctgatgttt |
21482383 |
T |
|
| Q |
320 |
ttgcaataacattatgaatcaataattt-gtttctcataaaatgtaattaaataatagataaatagaaaatctataattacttttggcaaaacaattctc |
418 |
Q |
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| T |
21482384 |
ttgcaataa-actatgaatcaatattttattttctcataaaatgtaa-tgaataattgaaaaatagaaaatcaataattacttttggcaaaacaattctc |
21482481 |
T |
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| Q |
419 |
cccagacttccgacatcactttgcttcaaaaccttttgtagaaggaacctcaagttcttttctggcttccaaccctatcaatcaaatacatcaaacacat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21482482 |
cccagacttccgacatcactttgcttcaaaaccttttgtagaaggaacctcaagttcttttctggcttccaaccctatcaatcaaatacatcaaacacat |
21482581 |
T |
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| Q |
519 |
tattcataaagcaagatagt |
538 |
Q |
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| T |
21482582 |
tattcataaagcaagatagt |
21482601 |
T |
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