View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_10 (Length: 489)
Name: NF17198_low_10
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 6992080 - 6991608
Alignment:
| Q |
1 |
taggacactgcatggacaatgagaaggataaatgtatagtttacaagtatatgttaaatggagatttggctacttccttgcacaaagtccatgaatcaga |
100 |
Q |
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| T |
6992080 |
taggacactgcatggacaatgagaaggataaatgtatagtttacaagtatatgttaaatggagatttggctacttccttgcacaaagtccatgattcaga |
6991981 |
T |
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| Q |
101 |
tggaaaattgcagtccatggattggatcacaagattgaaaattgcaacaggagttgctgaaggcctagcttacctacatgattgcagccctccccttgtt |
200 |
Q |
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| T |
6991980 |
tggaaaattgcagtccatggattggatcacaagattgaaaattgcaacaggagttgctgaaggcctagcttacctacatgattgcagccctccccttgtt |
6991881 |
T |
|
| Q |
201 |
cacaggtaaaaccgaatgcaattatgattgttatggttctctcattatgatcacaaaattacaattatatcacttagtcaaatttactagcataatataa |
300 |
Q |
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| T |
6991880 |
cacaggtaaaaccgaattcaattatgattgttatggt--tctcattatgatcacaaaattacaattatatcacttagtcaaatttactagcataatataa |
6991783 |
T |
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| Q |
301 |
ctgctgctgtgctgtgaaaaatatgctgaattct-nnnnnnnnnnnnnnnntcagcattgtgtttccatgacatcagaatggatctttttatgccactaa |
399 |
Q |
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| T |
6991782 |
ctgttgctgtgctgtgaaaaatatgctgaattctaaaaaaaaattaaaaaatcagcattgtgtttccatgacatcagaatggatctttttatgccactaa |
6991683 |
T |
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| Q |
400 |
taaaacagttatattgcataatatatatcagacataaatgaaagtcacagatttgtgttcttgctagtcaaagat |
474 |
Q |
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| T |
6991682 |
taaaacagttatattgcataatatatatcagacataaatgaaagtcacagatttgtgttcttgctagtcaaagat |
6991608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 33364562 - 33364627
Alignment:
| Q |
256 |
aaattacaattatatcacttagtcaaatttactagcataatataactgctgctgtgctgtgaaaaa |
321 |
Q |
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| T |
33364562 |
aaattacaattatatcacttagtcaaatttactagcataatataattgtttatgtgctgtgaaaaa |
33364627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 33364294 - 33364341
Alignment:
| Q |
42 |
tacaagtatatgttaaatggagatttggctacttccttgcacaaagtc |
89 |
Q |
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| T |
33364294 |
tacaagtatatgttaaattgagatttggctacttccttgcagaaagtc |
33364341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 33364499 - 33364536
Alignment:
| Q |
42 |
tacaagtatatgttaaatggagatttggctacttcctt |
79 |
Q |
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| T |
33364499 |
tacaagtatatgttaaatggagatttggctacttcctt |
33364536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 33364425 - 33364469
Alignment:
| Q |
102 |
ggaaaattgcagtccatggattggatcacaagattgaaaattgca |
146 |
Q |
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| T |
33364425 |
ggaaaattgaagtccatggattggatcacaatattgaaaattgca |
33364469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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