View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_11 (Length: 464)
Name: NF17198_low_11
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Complemental strand, 34086433 - 34086007
Alignment:
| Q |
11 |
cagagacaatttatcttttctagttatcgagatttcaaaatgaatggaaagaagaaaaatatagaggcgagagatagcatagaacaatatctttttgatg |
110 |
Q |
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| T |
34086433 |
cagagacaatttatcttttctagttatcgagatttcaaaatgaatggaaagaagaaaaatatagaggcgagagatagcatagaacaatatctttttgatg |
34086334 |
T |
|
| Q |
111 |
aagaaagtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggccagggccattatgcatcaattttctcagacaacaaacaatttaa |
210 |
Q |
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| T |
34086333 |
aagaa-gtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggccagggccattatgcatcaattttctcagacaacaaacaatttaa |
34086235 |
T |
|
| Q |
211 |
ggatttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatccttcttatctagtcctcaaaccaaaggagtaaaatagagattgcaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34086234 |
ggatttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatcctt---atctagtcctcaaaccaaaggggtaaaatagagattgcaag |
34086138 |
T |
|
| Q |
311 |
taaaattataccctcccttcgacgatatctgcgatgaatccacaaaatccctaaaagattgaaacaaacctactatttaccactgacaacacccaccaca |
410 |
Q |
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| T |
34086137 |
taaaattataccctcccttcgacgataactgcgatgaatccacaaaatccctaaaagattgaaacaaacctactatttaccactgacaacacc----aca |
34086042 |
T |
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| Q |
411 |
aataaacnnnnnnnttgaatttcctgtcggatatc |
445 |
Q |
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| T |
34086041 |
aataaacaaaaaaattgaatttcctgtcggatatc |
34086007 |
T |
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Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 13818696 - 13818875
Alignment:
| Q |
14 |
agacaatttatcttttctagttatcgagatttcaaaatgaatggaaagaagaaaaatatagaggcgagagatagcatagaacaatatctttttgatgaag |
113 |
Q |
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|||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
13818696 |
agacaatttatcttttcttgtcaccgatatttcaaaatgaatggaaagaagaaaaatatataggcgagagatagcatagaacaatacctttttgatgaag |
13818795 |
T |
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| Q |
114 |
aaagtcatgggagataatgcacagctatgaacaaacggtcctgttgccaaggccagggccattatgcatcaattttctcag |
194 |
Q |
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| T |
13818796 |
-aagccactggagataatgcataactatgaataaacggtcttgttgccaaggccagtgccattatgcatcaattttctcag |
13818875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 387
Target Start/End: Complemental strand, 39077114 - 39076944
Alignment:
| Q |
214 |
tttttccaatgacaaattgaaacctgctccactcgaatcacaaacacatccttcttatctagtcctcaaaccaaaggagtaaaatagagattgcaagtaa |
313 |
Q |
| |
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||||| |||| ||| || |||||||||||| ||| |||||||||||||||||| || ||||||||||| || ||| ||| ||||||||| ||||| |
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| T |
39077114 |
ttttttcaatcacagatggaaacctgctccgctcaaatcacaaacacatcctt---atatagtcctcaaaacagaggggtagaatagagatattgagtaa |
39077018 |
T |
|
| Q |
314 |
aattataccctcccttcgacgatatctgcgatgaatccacaaaatccctaaaagattgaaacaaacctactatt |
387 |
Q |
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||||| || || || | || || |||||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
39077017 |
aattacacactaccctagaaaatttctgcgatgaatccaccaaatctttaaaagtttgaaacaaacctactatt |
39076944 |
T |
|
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