View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_12 (Length: 443)
Name: NF17198_low_12
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 362
Target Start/End: Complemental strand, 30324496 - 30324124
Alignment:
| Q |
5 |
tgtccaagaatatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac |
104 |
Q |
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| T |
30324496 |
tgtccaataagatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac |
30324397 |
T |
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| Q |
105 |
acccnnnnnnnnttaatagcaaaagcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaactttgt |
204 |
Q |
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| T |
30324396 |
acccaaaaaaaattaatagcaaaagcattcaatattttgttgtccgattggaaatatacaactctacaacgtatgcattcattaagatatacaactttgt |
30324297 |
T |
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| Q |
205 |
atgtatacatatacaaatatttctgagatattatacaacttattagttctgtaaa---------------atatttgcggtgcccctaaaaagaatattc |
289 |
Q |
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| T |
30324296 |
atgtatacatatacaaatatttatgagatgttatacaacttattagttctgtaaaatatacaactctaaaatatttgcggtgcccctaaaaagaatattc |
30324197 |
T |
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| Q |
290 |
tttatagtgttgaacttcaatccttgtattgtagtctcgtgcttctattttttgaatgaatttaaataactgg |
362 |
Q |
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| T |
30324196 |
tttatagtgttgaacttcaatccttgtattgtagtctcgtgcttctattttttgaatgaatttaaataactgg |
30324124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 310
Target Start/End: Original strand, 38617397 - 38617451
Alignment:
| Q |
256 |
taaaatatttgcggtgcccctaaaaagaatattctttatagtgttgaacttcaat |
310 |
Q |
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| T |
38617397 |
taaaatatttgtggtgcccctaaaaagaatactatttatagtgttgaacttcaat |
38617451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 12161981 - 12162355
Alignment:
| Q |
5 |
tgtccaagaatatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac |
104 |
Q |
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||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12161981 |
tgtccaataagatccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaac |
12162080 |
T |
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| Q |
105 |
acccnnnnnnnn-ttaatagcaaaagcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaactttg |
203 |
Q |
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| T |
12162081 |
acctaaaaaaaaattaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcg |
12162180 |
T |
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| Q |
204 |
tatg------tatacatatacaaatatttctgagatattatacaacttattagttctg---------------taaaatatttgcggtgcccctaaaaag |
282 |
Q |
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| T |
12162181 |
tatgcatacatatacatatacaaatatttctgagatgttatacaacttattagttctgtaaaatatacaactctaaaatatttgcggtgcccctaaaaag |
12162280 |
T |
|
| Q |
283 |
aatattctttatagtgttgaacttcaatccttgtattgtagtctcgtgcttcta-ttttttgaatgaatttaaataactg |
361 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
12162281 |
aatattctttatagtgttgaacttcaatcc-----ttgtagtgtcgtgcttctatttttttgaatgaatttaaataactg |
12162355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 12406409 - 12406783
Alignment:
| Q |
5 |
tgtccaagaatatccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaac |
104 |
Q |
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||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12406409 |
tgtccaataagatccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaac |
12406508 |
T |
|
| Q |
105 |
acccnnnnnnnn-ttaatagcaaaagcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaactttg |
203 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12406509 |
acctaaaaaaaaattaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcg |
12406608 |
T |
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| Q |
204 |
tatg------tatacatatacaaatatttctgagatattatacaacttattagttctg---------------taaaatatttgcggtgcccctaaaaag |
282 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12406609 |
tatgcatacatatacatatacaaatatttctgagatgttatacaacttattagttctgtaaaatatacaactctaaaatatttgcggtgcccctaaaaag |
12406708 |
T |
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| Q |
283 |
aatattctttatagtgttgaacttcaatccttgtattgtagtctcgtgcttcta-ttttttgaatgaatttaaataactg |
361 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
12406709 |
aatattctttatagtgttgaacttcaatcc-----ttgtagtgtcgtgcttctatttttttgaatgaatttaaataactg |
12406783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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