View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17198_low_13 (Length: 437)
Name: NF17198_low_13
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 7167174 - 7167585
Alignment:
| Q |
9 |
gaagaatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcattgtaaattatttgaaacgcataaaagaaaacaatttcat |
108 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7167174 |
gaagcatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcattgtaaattatttgaaacgcataaaagaaaacaatttcat |
7167273 |
T |
|
| Q |
109 |
tttgttttgtcactaaaatcaattgttagttgaaattttgaatataaattatgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7167274 |
tttgttttgtcactaaaatcaattgttagttgaaattttgaatataaattatgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctca |
7167373 |
T |
|
| Q |
209 |
ttcatctcagaggtgagagttgaaaatgtcgtcacacaagaccttcataatcaagaagaagttcgtccaaaagacgaggaagaacaaggacatctcttac |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7167374 |
ttcatctcagaggtgagagttgaaaatgtcgtcacacaagaccttcataatcaagaagaagttcgtccaaaagacgaggaagaacaaggacatctcttac |
7167473 |
T |
|
| Q |
309 |
ctgatccgtatgaggaccaaccacaacatcaggtgattgtaaagtacattggtaatgcaatattttgttaagtcctttcagcagctagtgagaaacttat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7167474 |
ctgatccgtatgaggaccaaccacaacatcaggtgattgtaaagtacattggtaatgcaatattttgttaagtcctttcagcagctagtgagaaacttat |
7167573 |
T |
|
| Q |
409 |
tgtcgtctatta |
420 |
Q |
| |
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|||||||||||| |
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| T |
7167574 |
tgtcgtctatta |
7167585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 46493242 - 46493576
Alignment:
| Q |
9 |
gaagaatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcattgtaaattatttgaaacgcataaaagaaaacaatttcat |
108 |
Q |
| |
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|||| ||||||||||| |||| |||||||||||||||||| || || || |||||||||||||||||||||||| ||||||||||| | ||||||| |
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| T |
46493242 |
gaagcatatagacaaacgttggaggctaaagaatgttatttttctt-----atgttttcattgtaaattatttgaaacacataaaagaaatccatttcat |
46493336 |
T |
|
| Q |
109 |
tttgttttgtcactaaaatcaattgttagttgaaattttgaata-----------taaattatgcatgtattgggtgctagggtttacaagcatgttcgg |
197 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
46493337 |
ttt--tttgtcactaaaatcaattgttagttgaaatttcgaatattttcaaaatataaattatgcatgtattgggtgttagggtttacaagcatgctcgg |
46493434 |
T |
|
| Q |
198 |
tgcagtcctcattcatctcagaggtgagagttgaaaatgtcgtcacacaagaccttcataatcaagaagaagttcgtccaaaagacgaggaagaacaagg |
297 |
Q |
| |
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||||||||||| |||||| ||||||||| ||||||| |||||||||||||||||| | ||||||||||||||| || || |||| |||||||||||||| |
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| T |
46493435 |
tgcagtcctcaagcatctcggaggtgagaattgaaaacgtcgtcacacaagaccttgagaatcaagaagaagttggtgcagaagatgaggaagaacaagg |
46493534 |
T |
|
| Q |
298 |
acatctcttacctgatccgtatgaggaccaaccacaacatca |
339 |
Q |
| |
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|||| ||||| |||||||| ||| ||||||||||| ||||| |
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| T |
46493535 |
acattccttacttgatccgtgtgaagaccaaccacaccatca |
46493576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 340
Target Start/End: Complemental strand, 46494162 - 46493827
Alignment:
| Q |
9 |
gaagaatatagacaaaagttgtaggctaaagaatgttattattattgttttatattttcattgtaaattatttgaaacgcataaaagaaaacaatttcat |
108 |
Q |
| |
|
|||| |||||||||||||||| |||||||| || |||||| || || || ||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
46494162 |
gaagcatatagacaaaagttggaggctaaaaaaagttatttttctt-----atgttttcattgtaaattattttaaacgcataaaagaaaaccatttcat |
46494068 |
T |
|
| Q |
109 |
tttgttttgtcactaaaatcaattgttagttgaaattttgaatata-----------aattatgcatgtattgggtgctagggtttacaagcatgttcgg |
197 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||||||||| ||| |
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| T |
46494067 |
ttt--tttgtcactaaaatcaattgttagttgaaatttcgaatatatccaaaatataaattatgcatgtattgggtgctatgatttacaagcatgctcga |
46493970 |
T |
|
| Q |
198 |
tgcagtcctcattcatctcagaggtgagagttgaaaatgtcgtcacacaagaccttcataatcaagaagaagttcgtccaaaagacgaggaagaacaagg |
297 |
Q |
| |
|
|||| |||||| |||||| ||||||||| |||||||||| ||||||||||||||| | ||||||||||||||| || || |||| |||||||||||||| |
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|
| T |
46493969 |
tgcaatcctcagacatctcggaggtgagaattgaaaatgttgtcacacaagaccttgagaatcaagaagaagttggtgcagaagatgaggaagaacaagg |
46493870 |
T |
|
| Q |
298 |
acatctcttacctgatccgtatgaggaccaaccacaacatcag |
340 |
Q |
| |
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|||| ||||| ||||| ||||| ||||||||||| |||||| |
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|
| T |
46493869 |
acattccttactcgatccatatgaagaccaaccacaccatcag |
46493827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 64 - 339
Target Start/End: Original strand, 46491267 - 46491551
Alignment:
| Q |
64 |
tttcattgtaaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttgaata----------- |
152 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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|
| T |
46491267 |
tttcattgttaattattttaaacgcataaaagaaaatcatttcattttgtt--gtcactaaaatcaattgttagttgaaatttcgaatatatccaaaata |
46491364 |
T |
|
| Q |
153 |
taaattatgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctcattcatctcagaggtgagagttgaaaatgtcgtcacacaagacct |
252 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||| | |||||| ||||||||| |||||||||| |||| |
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|
| T |
46491365 |
taaattatgcatgtattgggtgttagggtttacaagcatgctcggtgcagtccttaagcatctaggtggtgagtattgaaaatgccgtcacacaaaacct |
46491464 |
T |
|
| Q |
253 |
tcataatcaagaagaagttcgtccaaaagacgaggaagaacaaggacatctcttacctgatccgtatgaggaccaaccacaacatca |
339 |
Q |
| |
|
| | ||||||||||||||| || || |||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||| ||||| |
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| T |
46491465 |
tgagaatcaagaagaagttggtgcataagatgaggaagaacaaggacatcccttacccgatccgtatgaagaccaaccacaccatca |
46491551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 58 - 342
Target Start/End: Complemental strand, 46492248 - 46491955
Alignment:
| Q |
58 |
ttatattttcattgtaaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttga-------- |
149 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||||| |||| |||||||||| |||||||||||||| |||||||||||||||||| || |
|
|
| T |
46492248 |
ttatgttttcattgtaaattattttaaatgcataaaaggaaaccatttcatttt--tttgtcactaaaataaattgttagttgaaatttcgactatatcc |
46492151 |
T |
|
| Q |
150 |
---atataaattatgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctcattcatctcagaggtgagagttgaaaatgtcgtcacaca |
246 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||| | ||||| |||||||| ||||||||| ||||||||| |
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| T |
46492150 |
aaaatataaattatgcatgtattggctgttagggtttacaagcatgctcgatgcagtccttaaacatctaggaggtgagtattgaaaatgccgtcacaca |
46492051 |
T |
|
| Q |
247 |
agaccttcataatcaagaagaagttcgtccaaaagacgaggaagaacaaggacatctcttacctgatccgtatgaggaccaaccacaacatcaggt |
342 |
Q |
| |
|
||| ||| | ||||||||||||||| || ||||||| ||| ||||||| ||||||| |||||||||||||||||| ||||||||||| ||| |||| |
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|
| T |
46492050 |
agatcttgagaatcaagaagaagttggtgcaaaagatgagtaagaacacggacatcccttacctgatccgtatgaagaccaaccacaccattaggt |
46491955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 369
Target Start/End: Original strand, 7177295 - 7177616
Alignment:
| Q |
58 |
ttatattttcattgtaaattatttgaaacgcataaaagaaaacaatttcattttgttttgtcactaaaatcaattgttagttgaaattttgaatata--- |
154 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | ||||| ||||| |||||||||| ||||||| ||||||||| ||||||||||| ||| ||||||| |
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|
| T |
7177295 |
ttatgttttcattgtaaattatatgaaacacgtaaaataaaaccatttcatttt--tttgtcattaaaatcaactgttagttgaattttcgaatatatcc |
7177392 |
T |
|
| Q |
155 |
--------aattatgcatgtattgggtgctagggtttacaagcatgttcggtgcagtcctcattcatctcagaggtgagagttgaaaatgtcgtcacaca |
246 |
Q |
| |
|
| ||||||||||||| |||| |||||||||||| |||| | ||||||||||||| |||||| ||||||| | |||||||| | ||||||| |
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|
| T |
7177393 |
aaaatataatttatgcatgtatttggtgttagggtttacaaccatgcttggtgcagtcctcaggcatctcggaggtgaaaaatgaaaatgccatcacaca |
7177492 |
T |
|
| Q |
247 |
agaccttcataatcaagaagaagttcgtccaaaagacgaggaagaacaaggacatctcttacctgatccgtatgaggaccaaccacaacatcaggt-gat |
345 |
Q |
| |
|
||||||||| ||||||||| ||||| || || |||| | || |||||||| ||||| |||| | ||||||| ||| ||||||||||| ||||||| || |
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|
| T |
7177493 |
agaccttcagaatcaagaacaagttggtgcagaagatgtggcagaacaagaacatcccttatccgatccgtgtgaagaccaaccacacaatcaggtacat |
7177592 |
T |
|
| Q |
346 |
tgtaaagtacattggtaatgcaat |
369 |
Q |
| |
|
||| |||||||||| ||||||||| |
|
|
| T |
7177593 |
tgttaagtacattgttaatgcaat |
7177616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 46493789 - 46493746
Alignment:
| Q |
377 |
taagtcctttcagcagctagtgagaaacttattgtcgtctatta |
420 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
46493789 |
taagtcctttcagcagctagtgagaaccttattgtcatctatta |
46493746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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