View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17198_low_15 (Length: 418)
Name: NF17198_low_15
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 5390966 - 5391382
Alignment:
| Q |
1 |
atctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390966 |
atctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactg |
5391065 |
T |
|
| Q |
101 |
caccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5391066 |
caccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctc |
5391165 |
T |
|
| Q |
201 |
atgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391166 |
atgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccat |
5391265 |
T |
|
| Q |
301 |
gtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataa---tagtgtatgttgtgacgtattttattgacaataatttgttt |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391266 |
gtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtagtgtatgttgtgacgtattttattgacaataatttgttt |
5391365 |
T |
|
| Q |
398 |
gtttagtataatctacc |
414 |
Q |
| |
|
||||||| |||| |||| |
|
|
| T |
5391366 |
gtttagtttaatttacc |
5391382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 5399685 - 5400017
Alignment:
| Q |
1 |
atctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399685 |
atctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactg |
5399784 |
T |
|
| Q |
101 |
caccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5399785 |
caccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctc |
5399884 |
T |
|
| Q |
201 |
atgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399885 |
atgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccat |
5399984 |
T |
|
| Q |
301 |
gtcattccttttttcttacccacctgaataaaa |
333 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
5399985 |
gtcgttccttttttcttacccacctgaataaaa |
5400017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 5394504 - 5394869
Alignment:
| Q |
1 |
atctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||||||| ||| |
|
|
| T |
5394504 |
atctcaaaccgttctgctaacaccttccacaaatgtttccacttgaaaacatcaccattactgcaattgaatgcttcattctttgcgttaggatccgctg |
5394603 |
T |
|
| Q |
101 |
caccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
5394604 |
caccccaaatatgttgttcggctattaaattagcatctgaagcagtagaataacactcccatgcaccttttgagccaggaaaccttaaaggaagaccctc |
5394703 |
T |
|
| Q |
201 |
atgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccat |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5394704 |
atgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctataaggtgaaaatccaaagatggggtgtggtcgattaatgaaccat |
5394803 |
T |
|
| Q |
301 |
gtcattccttttttcttacccacctgaataaaaatatagttcatctaattatataatagtgtatgt |
366 |
Q |
| |
|
||| |||||||||||||||||||||||| ||| |||| |||||| ||||||||||||| ||||||| |
|
|
| T |
5394804 |
gtcgttccttttttcttacccacctgaacaaatatattgttcatttaattatataataatgtatgt |
5394869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 3818850 - 3819103
Alignment:
| Q |
22 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcgg |
121 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
3818850 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgttcag |
3818949 |
T |
|
| Q |
122 |
atattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgta |
221 |
Q |
| |
|
|| |||| ||||| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||| |
|
|
| T |
3818950 |
caatcaaatctgcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgta |
3819049 |
T |
|
| Q |
222 |
aacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
275 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3819050 |
aacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
3819103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 22 - 275
Target Start/End: Complemental strand, 47339027 - 47338774
Alignment:
| Q |
22 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcgg |
121 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
47339027 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgctcag |
47338928 |
T |
|
| Q |
122 |
atattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgta |
221 |
Q |
| |
|
|| |||| |||||| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||| |
|
|
| T |
47338927 |
caatcaaatcagcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgta |
47338828 |
T |
|
| Q |
222 |
aacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
275 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
47338827 |
aacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
47338774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 286
Target Start/End: Complemental strand, 47347514 - 47347233
Alignment:
| Q |
5 |
caaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcacc |
104 |
Q |
| |
|
||||| |||| || || |||||||| | |||||||| || |||||||| |||||||| ||||| || ||||| ||||| |||| |||||||||||| | |
|
|
| T |
47347514 |
caaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacagttaaaagcttcgttcttagcataaggatccactgcggc |
47347415 |
T |
|
| Q |
105 |
ccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgc |
204 |
Q |
| |
|
|||||||||||| || | || |||| ||||| ||||| |||||| | ||||| || | |||| || ||||| | || |||| ||| || ||| |
|
|
| T |
47347414 |
ccaaatatgttgctctgcaatcaaatccgcatcagaagccacagaataagactcccaagctccctttgtaccgggaaatttcaacggaacaccttcgtgc |
47347315 |
T |
|
| Q |
205 |
ttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataacttgtggtc |
286 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||| ||| ||||||| || ||||||||||||||||| |||||||| |||| |
|
|
| T |
47347314 |
ttgcaaattgcagcataaacacaaagtgtaccaacgagattcatcaaactataaggtgaaaatccaaatataacttgaggtc |
47347233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 47350036 - 47349942
Alignment:
| Q |
22 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
116 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||| ||||||| ||||| |
|
|
| T |
47350036 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttg |
47349942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 47349859 - 47349783
Alignment:
| Q |
199 |
tcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
275 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||| |
|
|
| T |
47349859 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacattcatcaaactgtaaggtgagaatccaaagat |
47349783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University