View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_16 (Length: 414)
Name: NF17198_low_16
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 40448948 - 40449335
Alignment:
| Q |
18 |
gatttatctcaagaccctatgcaatgtagtaagaccagttacaacatattacaaagtaaatccttccccaacatattccattgtttgaattatattatat |
117 |
Q |
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| T |
40448948 |
gatttatctcaagaccctatgcaatgtagtaagaccagttacaacatattacaaagtaaatccttccccaacatattccattgtttgagttatattatat |
40449047 |
T |
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| Q |
118 |
ttatggcatatgggaaggaaaatataatgcttaaaggggtatgtgcaatccattcatggcttctcataatctgagcaannnnnnnnnnnnnnnnacataa |
217 |
Q |
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| T |
40449048 |
ttatggcatatgggaaggaaaatataatgcttaaaggggtatgtgcaatccatttatggcttctcataatctgagcaatttttttttcttttttacataa |
40449147 |
T |
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| Q |
218 |
gcagcacattagtatcttcttcacaatctaaaatgaactgcttcccttaagtcattgcagaaggagaatccatgcaatggctctattgctcaaatctaaa |
317 |
Q |
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| T |
40449148 |
gcagcacattagtatcttcttcacaatctaaaatgaactgcttcccttaagtcattgcagaaggagaatccgtgcaatggctctattgctcaaatctaaa |
40449247 |
T |
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| Q |
318 |
tcttctgtttaagaacatgacgcaactgaaccttctggctctccattctagcctccaaaagtttagctttcaagctatgcttctgtgc |
405 |
Q |
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| T |
40449248 |
tcttctgtttaagaacatgacgcaactgaaccttctggctctccattctggcctccaaaagtttagctttcaagctatgcttctgtgc |
40449335 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 20346151 - 20346230
Alignment:
| Q |
311 |
atctaaatcttctgtttaagaacatgacgcaactgaaccttctggctctccattctagcctccaaaagtttagctttcaa |
390 |
Q |
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| T |
20346151 |
atctaaatcttctgtttcagaacatggcgcagctgaaccttgttgctttctatcctagcctccataagtcttgctttcaa |
20346230 |
T |
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