View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_17 (Length: 411)
Name: NF17198_low_17
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 30272905 - 30273307
Alignment:
| Q |
11 |
atcatcaggaagattacaatgaagaaggacataagagagggagagagccatagggaggacccttgaaattgtttattgtttcaagtggtttcttccaaat |
110 |
Q |
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| T |
30272905 |
atcatcaggaagattacaatgaagaaggacata-gagagggagagagccatagggaggaccctcgaaattgtttgttgtttcaattggtttcttccaaat |
30273003 |
T |
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| Q |
111 |
tgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaa---------------ttg------ctctctcttgttgataagttc |
189 |
Q |
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| T |
30273004 |
tgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaaagctttcctgtgcacttgtctaggctctctcttgttgataagttc |
30273103 |
T |
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| Q |
190 |
gtgttcctcctgagttggtgcaacgttgactcttttaaaatggttgtaaaaatcatgcatgtttccatattcgatcccagcaataaaagaaaatattgtt |
289 |
Q |
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| T |
30273104 |
gtgttcctcctgagttggtgcaactttgactcttttaaaatggttgtaaaaatcatgcatgtttccatattcaatcccagcaataaaagaaaatattgtt |
30273203 |
T |
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| Q |
290 |
ctctccacaaggattttatattttggttcaattttgagctccatatccactaacacccggataaaatgaccaaaagttctatcaatcattggcttatttg |
389 |
Q |
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| T |
30273204 |
ctctccacaaggattttatattttggttcaattttgagctccatatccactaacacccgaacaaaatgaccaaaagttctatcaatcattggcttatttg |
30273303 |
T |
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| Q |
390 |
tagt |
393 |
Q |
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|||| |
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| T |
30273304 |
tagt |
30273307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 273 - 373
Target Start/End: Original strand, 30434538 - 30434638
Alignment:
| Q |
273 |
taaaagaaaatattgttctctccacaaggattttatattttggttcaattttgagctccatatccactaacacccggataaaatgaccaaaagttctatc |
372 |
Q |
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| T |
30434538 |
taaaagaaaatattgttctttcaacaaagattttatattttgattaaattttgagttccatgtccactaacacccgaacaaaatgagcaaaagttctatc |
30434637 |
T |
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| Q |
373 |
a |
373 |
Q |
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| T |
30434638 |
a |
30434638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 12089163 - 12089226
Alignment:
| Q |
102 |
cttccaaattgataatttcagtttctttgttctgcaccttcatgtcatctttggtttgcacaaa |
165 |
Q |
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| T |
12089163 |
cttccaaattgataatttcagtttctttgttttgtacattcatgttatctttggtttgcacaaa |
12089226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 12089254 - 12089295
Alignment:
| Q |
172 |
tctcttgttgataagttcgtgttcctcctgagttggtgcaac |
213 |
Q |
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| T |
12089254 |
tctcttgttgatcagttcttgttcctcctgagttggtgcaac |
12089295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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