View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_18 (Length: 403)
Name: NF17198_low_18
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 53625848 - 53626224
Alignment:
| Q |
20 |
cacactgtatatttgtttgtattgattgtttgctacataaagtttgggggcttcaggtgcttaataacaaaccatcatttcctagctccacaccaattcc |
119 |
Q |
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| T |
53625848 |
cacactgtatatttgtttgtattgattgtttgctacataaagtttgggggcttcaggtgcttaataacaaaccatcatttcctagctccacaccaattcc |
53625947 |
T |
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| Q |
120 |
gacggccaatgttttcgaggatgttaatgttattataattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttg |
219 |
Q |
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| T |
53625948 |
gacggccaatgttttcgaggatgttaatgttattataattgttccaatgagaacttcactttcgaggtaatatattgtttgaaatttaatttatactttg |
53626047 |
T |
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| Q |
220 |
gtgttttaattttataactcgttgacataacctcatatatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaat |
319 |
Q |
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| T |
53626048 |
gtgttttaattttataactcgttgacataacctcatatatttgagctagattaaccacttaaagttgtggcaaaagatgttcaattttagttgttcaaat |
53626147 |
T |
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| Q |
320 |
ataagacaattgtacgcggcaggtcttcatgtctagttatgtaaatgaattacattacattgcaccagttcatctca |
396 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53626148 |
ataaaacaattgtacgcggcaggtcttcatgtctagttatgtaaatgaattacattacattgcaccagttcatctca |
53626224 |
T |
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