View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_19 (Length: 403)
Name: NF17198_low_19
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 21549630 - 21549222
Alignment:
| Q |
13 |
cctttttctgtgttgcttctgcttttgctttaaaagtaatgtaatataccctaggagcatataaagaagtagcaccaggatgggtacacttgacaacttt |
112 |
Q |
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| T |
21549630 |
cctttttctgtattgcttctgcttttgctttaaaagtaatgtaatataccctaggagcatataaagaagtagcaccaggatgggtacacttgacaacttt |
21549531 |
T |
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| Q |
113 |
atcaaacacaaaagttggaccttaa---------------------gaattagaattaatttagttaatgaataaacaaacatataccaatattattaag |
191 |
Q |
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| T |
21549530 |
atcaaacacaaaagttggaccctaatcaataataaataagtaaaaagaattagaattagtttagttaatgaataaacaaacatatac-aatattattaag |
21549432 |
T |
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| Q |
192 |
tattgaacaaacctgcttaatatttgtttcattgtaaaacttcaaagcagcaatgcagaggggtttgagagtacggagcacatcatcgcttaagtcgagg |
291 |
Q |
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|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549431 |
tattgaaccaacctgcttaatatttgtttgattgtaaatcttcaaagcagcaatgcagaggggtttgagagtacggagcacatcatcgcttaagtcgagg |
21549332 |
T |
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| Q |
292 |
ggtacaataccccgccagcacaatatggtggacagtggatagcatagtaaacctgctttgtattgtccagaatcaatcaaaattaagagataagtgaaac |
391 |
Q |
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| T |
21549331 |
ggtaca--acaccgccagcacaacctggtggacagtggatagcatcgtagacctgctttgtattgtcctgaatcaatcaaaattaagagataagtgaaac |
21549234 |
T |
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| Q |
392 |
agacaaacaaca |
403 |
Q |
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| T |
21549233 |
aaacaaacaaca |
21549222 |
T |
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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 20361804 - 20361710
Alignment:
| Q |
37 |
ttgctttaaaagtaatgtaatataccctaggagcatataaagaagtagcaccaggatgggtacacttgacaactttatcaaacacaaaagttgga |
131 |
Q |
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| T |
20361804 |
ttgcttgaaaagtaatgtaatacaccctaccagcagttaaatcagtagcagcaggatgggtacacttgacaacattatgaaacacaaaagttgga |
20361710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 20361515 - 20361467
Alignment:
| Q |
329 |
gatagcatagtaaacctgctttgtattgtccagaatcaatcaaaattaa |
377 |
Q |
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| T |
20361515 |
gatagcatcgtaaacctggtttgtgttgtccagaatcaatcaaaattaa |
20361467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 55193937 - 55193886
Alignment:
| Q |
80 |
agtagcaccaggatgggtacacttgacaactttatcaaacacaaaagttgga |
131 |
Q |
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| T |
55193937 |
agtaccaccagcatgagtacacttgacaactttatgaaacacaaaagttgga |
55193886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 11031911 - 11031962
Alignment:
| Q |
80 |
agtagcaccaggatgggtacacttgacaactttatcaaacacaaaagttgga |
131 |
Q |
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| T |
11031911 |
agtaccaccagcatgagtacacttgacaactttatgaaccacaaaagttgga |
11031962 |
T |
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