View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_2 (Length: 897)
Name: NF17198_low_2
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 371 - 875
Target Start/End: Original strand, 16922334 - 16922839
Alignment:
| Q |
371 |
ttgaatgtaac-acatatgttgatgttagatattgatacatgttggacactgaacacatcatcgatttgaaatatcggtgctacatgttattattgagat |
469 |
Q |
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||||||||||| ||||||||||||||||| | ||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||| ||||| | |
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| T |
16922334 |
ttgaatgtaaccacatatgttgatgttaggcactgatacatgttggacacaggacacatcatcgatttgaattatctgtgctacatgttataattgatct |
16922433 |
T |
|
| Q |
470 |
ttataattgtattttctttcataggcacttggtaatgagaatcacaaactagtatctggtgctggaagttgttctgccactttggcaccagaaatttcac |
569 |
Q |
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| T |
16922434 |
ttataattgtattttcttttataggcacttggtaatgagaatcacaaactagtatctggtgctggaagttgttctgccactttggcaccagaaatttcac |
16922533 |
T |
|
| Q |
570 |
acttggaggactctagtttgaaagttggaaaactttctgttgagcaaaggaaagagaagattcatagatatatgaagaagagaaatgaaagaaatttcag |
669 |
Q |
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| T |
16922534 |
acttggaggactctagtttgaaagttggaaaactttctgttgagcaaaggaaagagaagattcatagatatatgaagaagagaaatgaaagaaatttcag |
16922633 |
T |
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| Q |
670 |
caagaaaatcaaggtatactatatgatacatagatttcaatacattcatctataaaaattcatttatattttcaaaattcagctaatgatgcnnnnnnnn |
769 |
Q |
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| T |
16922634 |
caagaaaatcaaggtatactatatgatacatagatttcaatacattcatctataaaaattcatttatattttcaaaattcagctaatgatgcaaaaaaaa |
16922733 |
T |
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| Q |
770 |
tacatgtgcagtatgcttgtcgaaaaactttagcggatagccggccgcgagttagaggaaggtttgcaaagaatgatgattttggagagaatcataggcc |
869 |
Q |
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| T |
16922734 |
tacatgtgcagtatgcttgtcgaaaaactttagcggatagccggccgcgagttagaggaaggtttgcaaagaatgatgattttggagagaatcataggcc |
16922833 |
T |
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| Q |
870 |
aggtag |
875 |
Q |
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| T |
16922834 |
aggtag |
16922839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 16922014 - 16922332
Alignment:
| Q |
17 |
aatatcttaagctgaaaactcataggtgctgccaatatacatcaaataatagatagcatataatataagtccttttataaagttagctgcattaaaataa |
116 |
Q |
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| T |
16922014 |
aatatcttaagctgaaaactcataggtgc---caatatacatcaaataatagatagcatataatataagtccttttataaagttagctgcattaaaataa |
16922110 |
T |
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| Q |
117 |
tacttttgatttggcttggcttagtagaaaggaataaccactttaagttaataataaaaaacaaaagataatatagacagaagcatcattagaaaatacc |
216 |
Q |
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| T |
16922111 |
tacttttgatttgg-----cttagtagaaaggaataaccactttaagttaataataaaaaacaaaagataatatagacagcagcatcattagaaaagacc |
16922205 |
T |
|
| Q |
217 |
atcttcatgattggttctatgtgtatatctctttctacagtctataataaaagt--tattttattactatgaag--tacgaacacttacacgaacgtcaa |
312 |
Q |
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| T |
16922206 |
atcttcatgattggttctatgtgtatatctctttctacagtctttaataaaagtagtattttattactacgaagcacacagacactgacacgaacaccaa |
16922305 |
T |
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| Q |
313 |
acatagcactgacactgagacgcaaat |
339 |
Q |
| |
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|| || |||||||| |||||| ||||| |
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| T |
16922306 |
acgtaacactgacattgagactcaaat |
16922332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 505 - 685
Target Start/End: Original strand, 32555156 - 32555333
Alignment:
| Q |
505 |
tgagaatcacaaactagtatctggtgctggaagttgttctgccactttggcaccagaaatttcacacttggaggactctagtttgaaagttggaaaactt |
604 |
Q |
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||||||||| |||||||| |||||||||| |||| |||||||| || |||||||||| ||| ||||||| ||||| | ||| || |||||||||||| |
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| T |
32555156 |
tgagaatcaacaactagtagctggtgctggtagtt---ctgccactctgacaccagaaatctcaaacttggaagactccactttcaaggttggaaaactt |
32555252 |
T |
|
| Q |
605 |
tctgttgagcaaaggaaagagaagattcatagatatatgaagaagagaaatgaaagaaatttcagcaagaaaatcaaggta |
685 |
Q |
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| T |
32555253 |
tctgttgaacaaaggaaagaaaagattcacagatacatgaagaaaagaaatgaaagaaacttcagcaagaaaattaaggta |
32555333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 776 - 857
Target Start/End: Original strand, 32555488 - 32555569
Alignment:
| Q |
776 |
tgcagtatgcttgtcgaaaaactttagcggatagccggccgcgagttagaggaaggtttgcaaagaatgatgattttggaga |
857 |
Q |
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|||||||||| || || |||||| | || |||||| | || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
32555488 |
tgcagtatgcatgccgcaaaactctggctgatagcagacctcgagttagaggaagatttgcaaagaatgatgattttggaga |
32555569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 20120025 - 20120078
Alignment:
| Q |
401 |
attgatacatgttggacactgaacacatcatcgatttgaaatatcggtgctaca |
454 |
Q |
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||||||||||||||||||||| |||||| | |||| ||||| ||||||||||| |
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| T |
20120025 |
attgatacatgttggacactggacacatatttgattagaaatgtcggtgctaca |
20120078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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