View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_23 (Length: 387)
Name: NF17198_low_23
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 24813663 - 24813282
Alignment:
| Q |
1 |
tgctcaagaatttgcacctcaaatataaaaatgcacaccaaaaaagtgctattttggaccagtttaagacaccattttccttaaatattcagattataac |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813663 |
tgctcaagaatttgcacttcaaatataaaaatgcacaccaaaaaagtgctattttggaccagtttaagacaccattttccttaaatattcagattataac |
24813564 |
T |
|
| Q |
101 |
aaaatcattacaaggaagatacttcaatctccttctc-ttcaaatcaacctataagcttataaggaatatacacacaaagttcttaatttttgtgtatgt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813563 |
aaaatcattacaaggaagatacttcaatctccttctcattcaaatcaacctataagcttataaggaatatacacacaaagttcttaatttttgtgtatgt |
24813464 |
T |
|
| Q |
200 |
tacttcatcagcaaaaccataaggttattttcattatcactatttttcttaagtgcctcacacatcataaagattcatagtatctattatttatttgttt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24813463 |
tacttcatcagcaaaaccataaggttattttcattatcactatttttcttaagtgcctcacacatcataaagattcatagtatctatcatttatttgttt |
24813364 |
T |
|
| Q |
300 |
gttaagatttgatatttttgtaagtgagattatggaagagtcatcaaatcttacatatagttgaaattgttgtaggagtatt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24813363 |
gttaagatttgatatttttgtaagtgagattatggaagagtcatcaaatcttacatatagttgaaattgttgtaggagtatt |
24813282 |
T |
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