View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_low_3 (Length: 795)

Name: NF17198_low_3
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_low_3
NF17198_low_3
[»] chr3 (4 HSPs)
chr3 (18-783)||(290029-290794)
chr3 (148-526)||(279714-280092)
chr3 (560-649)||(280207-280296)
chr3 (702-754)||(8354176-8354228)
[»] chr2 (9 HSPs)
chr2 (39-763)||(24531777-24532497)
chr2 (39-783)||(24525104-24525846)
chr2 (702-756)||(42436450-42436504)
chr2 (702-754)||(1979988-1980040)
chr2 (702-754)||(4789262-4789314)
chr2 (704-752)||(16107393-16107441)
chr2 (702-749)||(106466-106512)
chr2 (702-732)||(16549969-16549999)
chr2 (702-763)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (667-769)||(6015774-6015876)
chr7 (667-749)||(13316515-13316596)
chr7 (702-747)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (667-769)||(12252506-12252608)
chr1 (702-762)||(18172642-18172701)
chr1 (667-754)||(18547889-18547976)
chr1 (704-752)||(2981105-2981153)
chr1 (701-755)||(29101796-29101850)
[»] chr4 (3 HSPs)
chr4 (702-776)||(4442126-4442200)
chr4 (682-748)||(10266447-10266511)
chr4 (682-748)||(10285472-10285536)
[»] chr8 (2 HSPs)
chr8 (667-775)||(11405858-11405965)
chr8 (702-754)||(26588155-26588207)
[»] chr6 (3 HSPs)
chr6 (702-754)||(7732693-7732745)
chr6 (704-752)||(24585721-24585769)
chr6 (704-754)||(5090494-5090544)
[»] chr5 (2 HSPs)
chr5 (702-754)||(14460178-14460230)
chr5 (702-749)||(29286097-29286143)


Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 18 - 783
Target Start/End: Original strand, 290029 - 290794
Alignment:
Q  18 aagcaaggctgcacgtcgatacaaaaggtcctattctttattcatatattaatggattctggtggggtgtagaaggtggtagcccgagtaaacctggttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  290029 aagcaaggctgcacgtcgatacaaaaggtcctattctttattcatatattaatggattttggtggggcgtagaaggtggtagcccgagtaaacctggttt 290128  T
Q  118 cgtatatgaagaggatgtttctttgaaacgaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatg 217  Q
     |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290129 tgtatatgaagaggatgtttctttgaaacaaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatg 290228  T
Q  218 aaagaaactggtattgttggcggtcctgcgaaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  290229 aaagaaactggtattgttggcggtcctgcgaaactcatttcaactgaatatccaaacaatgttttggatttatcaaaatctacttggtcatacaaagttg 290328  T
Q  318 ggatgaatggtgtggctagaaagttctatgatcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||    
T  290329 ggatgaatggtgtggctagaaagttctatgatcccaaatctaccaatgtagttccatggcaaacacgtaatgtttctatagaaggaccaatgacttggta 290428  T
Q  418 caagaccactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcgga 517  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290429 caagaccactttcaagacccctgaaggttcaaaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcgga 290528  T
Q  518 aggtattggattggtgaaaattcatcttttagattttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgg 617  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  290529 aggtattggattggtgaaaattcatcttttaggttttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagagctgg 290628  T
Q  618 gtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatgaatccagaaattccgttaagtgggatcaaggttgcatatcataaatatttat 717  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||| |||||||||    
T  290629 gtctaggtgaaggccctttcaatgtgtctgtcgacatagttagcaacgaatccaaaaatttcgttaagtgggatcaaggttgcatatcatgaatatttat 290728  T
Q  718 acaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaataattaga 783  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290729 acaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaataattaga 290794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 148 - 526
Target Start/End: Original strand, 279714 - 280092
Alignment:
Q  148 aggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttggcggtcctgcg 247  Q
    |||| |||||||||||||||| |||||||||||| | ||  |  ||||||   ||| || | |||||||| |||||||||| |||||||| |||||||      
T  279714 aggtaccaatattataagtttattaagtgttacagtaggtcatgcaaattacggtgcgttctttgatatgcaagaaactggcattgttgggggtcctgta 279813  T
Q  248 aaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctagaaagttctatg 347  Q
    |||||| ||||||  ||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| || ||| |||||||||||    
T  279814 aaactcttttcaatcgaaaatccaaacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggataaatggtatgactaaaaagttctatg 279913  T
Q  348 atcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctgaaggttc 447  Q
    |||||||| | |||| |  ||||| |||| |||||  ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||| |    
T  279914 atcccaaaaccaccattggagttcaatggaaaacaaataatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtac 280013  T
Q  448 agaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcggaaggtattgg 526  Q
    | |||  |||||| |||| |||||||| ||||| | |||| ||||||||||||| ||||||||||| ||||||||||||    
T  280014 aaaccccgtagtcttggacttgataggccttcagaaaggagaagcatgggttaatggtcaaagtattggaaggtattgg 280092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 649
Target Start/End: Original strand, 280207 - 280296
Alignment:
Q  560 gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtc 649  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||| | | || |  ||||||||||| |||||||    
T  280207 gtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggttttgatgcaacccctttcaatgcgtctgtc 280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 754
Target Start/End: Original strand, 8354176 - 8354228
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  8354176 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 39 - 763
Target Start/End: Original strand, 24531777 - 24532497
Alignment:
Q  39 caaaaggtcctattctttattcatatattaatggattctggtggggtgtagaaggtggtagcccgagtaaacctggtttcgtatatgaagaggatgtttc 138  Q
    ||||||| |||||| ||||||| |||||||||||||| |||||||||||| | | | ||  |||||||| || | ||||||||||||| |||||| ||||    
T  24531777 caaaaggccctattatttattcgtatattaatggattttggtggggtgtatatgatagtgtcccgagtacacgtagtttcgtatatgatgaggatatttc 24531876  T
Q  139 tttgaaacgaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttggc 238  Q
     |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  24531877 cttgaaacgaggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggg 24531976  T
Q  239 ggtcctgcgaaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctagaa 338  Q
    |||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24531977 ggtcatgttaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtatggctagaa 24532076  T
Q  339 agttctatgatcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccc 438  Q
    |||||||||||||||||||||   ||  ||||||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24532077 agttctatgatcccaaatcta---atggagttccatggataccacgtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccc 24532173  T
Q  439 tgaaggttcagaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaat 538  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||| ||||||||| || |||||||||||    
T  24532174 tgaagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaatgtattggaaggtatcggcttggtgaaaat 24532273  T
Q  539 tcatcttttagattttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttca 638  Q
    ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||||||    
T  24532274 tcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtaaaggccctttca 24532373  T
Q  639 atgtgtctgtcaacatagtcagcaatgaatccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttata 738  Q
    ||||||||||| ||||| ||||||  |||||||||||||  |||||||||||||||||||||  ||||| |||||||||||| ||||| ||||||| |||    
T  24532374 atgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttatacagaaatacataaattcata 24532473  T
Q  739 accaataaaatgatgacaccgttat 763  Q
    |||||| ||||||||||||| ||||    
T  24532474 accaat-aaatgatgacaccattat 24532497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 39 - 783
Target Start/End: Original strand, 24525104 - 24525846
Alignment:
Q  39 caaaaggtcctattctttattcatatattaatggattctggtggggtgtagaaggtggtagcccgagtaaacctggtttcgtatatgaagaggatgtttc 138  Q
    ||||||| |||||| |||||||||||||||||||||| |||||||||||| | | | ||| |||||||| || | ||||||||||||| |||||| ||||    
T  24525104 caaaaggccctattatttattcatatattaatggattttggtggggtgtatatgatagtatcccgagtacacatagtttcgtatatgatgaggatatttc 24525203  T
Q  139 tttgaaacgaggtgccaatattataagtttgttaagtgttacacttggcaaatcaaattgtagtgggtacattgatatgaaagaaactggtattgttggc 238  Q
     |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  24525204 cttgaaacgaggtaccaatattataagtttattaagtgttacacttggtaaatcaaattgtagtgggttcattgatatgaaagaaactggtattgttggg 24525303  T
Q  239 gg-tcctgcgaaactcatttcaactgaatatccagacaatgttttggatttatcaaaatctacttggtcatacaaagttgggatgaatggtgtggctaga 337  Q
    || || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  24525304 gggtcatgtgaaactcatttcaattgaatatccagacaatgttttggatttatcaaaatctacttggtcgtacaaagttgggatgaatggtatggctaga 24525403  T
Q  338 aagttctatgatcccaaatctaccaatttagttccatggcaaacacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagaccc 437  Q
    |||||||| ||||||| |||||   ||  ||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24525404 aagttctaagatcccagatcta---atggagttccatggataccacgtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagaccc 24525500  T
Q  438 ctgaaggttcagaccttgtagtcctggatttgataggtcttcaaagaggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaa 537  Q
    || |||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||  | ||||||||||    
T  24525501 ctaaagggtcaaaccttgtagtcctggatttgataggccttcaaagaggaaaagcatgggttaatggtcaaagtattggaaggtatcagcttggtgaaaa 24525600  T
Q  538 ttcatcttttagattttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttc 637  Q
    |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| |||||||||||||||    
T  24525601 ttcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggtctgggtgaaggccctttc 24525700  T
Q  638 aatgtgtctgtcaacatagtcagcaatgaatccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaa-atatataaattta 736  Q
    |||||||||||| ||||| ||||||  |||||||||||||  |||||||||||||||||||||  ||||| |||||||||| |||| ||| ||||||| |    
T  24525701 aatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttataaaaaatatacataaattca 24525800  T
Q  737 taaccaataaaatgatgacaccgttatctttaagaaaaataattaga 783  Q
    |||||||| ||||||||||||| |||| | || | ||||||||||||    
T  24525801 taaccaat-aaatgatgacaccattatgtctatgcaaaataattaga 24525846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 756
Target Start/End: Complemental strand, 42436504 - 42436450
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 756  Q
    |||||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  42436504 tatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatgaca 42436450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 754
Target Start/End: Complemental strand, 1980040 - 1979988
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  1980040 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 754
Target Start/End: Original strand, 4789262 - 4789314
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  4789262 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 752
Target Start/End: Original strand, 16107393 - 16107441
Alignment:
Q  704 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 752  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  16107393 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 749
Target Start/End: Complemental strand, 106512 - 106466
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 749  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  106512 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 106466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 702 - 732
Target Start/End: Original strand, 16549969 - 16549999
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaa 732  Q
    |||||||||||||||||||||||||||||||    
T  16549969 tatcataaatatttatacaaaaatatataaa 16549999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 763
Target Start/End: Original strand, 3829243 - 3829304
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 763  Q
    ||||||||||| || |||||||| || |||||| ||||| |||||||| |||||||| ||||    
T  3829243 tatcataaatagttttacaaaaacatttaaattcataacaaataaaattatgacaccattat 3829304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 667 - 769
Target Start/End: Complemental strand, 6015876 - 6015774
Alignment:
Q  667 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 766  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  6015876 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 6015777  T
Q  767 taa 769  Q
    |||    
T  6015776 taa 6015774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 667 - 749
Target Start/End: Complemental strand, 13316596 - 13316515
Alignment:
Q  667 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaat 749  Q
    ||||||||||| |  |||||||| ||||  |||  |||| ||||||||||||||||| |||| ||||||||||| ||||||||    
T  13316596 atccagaaatttcaataagtggggtcaatattgtttatcttaaatatttatacaaaa-tatacaaatttataactaataaaat 13316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 702 - 747
Target Start/End: Original strand, 17257432 - 17257476
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaa 747  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||    
T  17257432 tatcataaatgtttata-aaaaatatataaatttataactaataaa 17257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 667 - 769
Target Start/End: Complemental strand, 12252608 - 12252506
Alignment:
Q  667 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 766  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  12252608 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 12252509  T
Q  767 taa 769  Q
    |||    
T  12252508 taa 12252506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 762
Target Start/End: Complemental strand, 18172701 - 18172642
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgtta 762  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| || |||| |||||    
T  18172701 tatcaaaaatatttatacaaaa-tatataaatttataaccaataaaaagaagacatcgtta 18172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 667 - 754
Target Start/End: Original strand, 18547889 - 18547976
Alignment:
Q  667 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    ||||||||||| | | ||||||| ||||| | |  ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  18547889 atccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 752
Target Start/End: Complemental strand, 2981153 - 2981105
Alignment:
Q  704 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 752  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  2981153 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 701 - 755
Target Start/End: Original strand, 29101796 - 29101850
Alignment:
Q  701 atatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgac 755  Q
    |||| ||||||||| ||| ||| |||||||||||||||| | |||||||||||||    
T  29101796 atattataaatattaataaaaatatatataaatttataaacgataaaatgatgac 29101850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 702 - 776
Target Start/End: Original strand, 4442126 - 4442200
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaat 776  Q
    ||||||||||||||| ||||||| |||||||| ||||||||| ||||| ||| || | ||||| |||||||||||    
T  4442126 tatcataaatatttaaacaaaaaaatataaatctataaccaaaaaaataatggcatcattatcattaagaaaaat 4442200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 748
Target Start/End: Original strand, 10266447 - 10266511
Alignment:
Q  682 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 748  Q
    |||||||||||||| | |  ||||||||||||||||  ||||| || ||||||||||||||||||||    
T  10266447 taagtgggatcaagatcgtttatcataaatatttat--aaaaacatttaaatttataaccaataaaa 10266511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 748
Target Start/End: Original strand, 10285472 - 10285536
Alignment:
Q  682 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 748  Q
    |||||||||||||| | |  ||||||||||||||||  |||||||| |||||| |||||||||||||    
T  10285472 taagtgggatcaagatcgtttatcataaatatttat--aaaaatatttaaattcataaccaataaaa 10285536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 775
Target Start/End: Complemental strand, 11405965 - 11405858
Alignment:
Q  667 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 766  Q
    ||||||||||| |  |||||||| |||| |||   |||| ||||||||| || |||||||| |||||||||||| ||||||||||||||| | ||||| |    
T  11405965 atccagaaatttcaataagtggggtcaaagttatttatcttaaatatttcta-aaaaatatgtaaatttataacaaataaaatgatgacatcattatcat 11405867  T
Q  767 taagaaaaa 775  Q
    ||| |||||    
T  11405866 taacaaaaa 11405858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 754
Target Start/End: Original strand, 26588155 - 26588207
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  26588155 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 702 - 754
Target Start/End: Original strand, 7732693 - 7732745
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  7732693 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 752
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  704 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 752  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 704 - 754
Target Start/End: Original strand, 5090494 - 5090544
Alignment:
Q  704 tcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    |||||||||||| ||||||||| ||| |||| ||||| |||||||||||||    
T  5090494 tcataaatatttttacaaaaatctatgaattcataacaaataaaatgatga 5090544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 702 - 754
Target Start/End: Original strand, 14460178 - 14460230
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 754  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  14460178 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 702 - 749
Target Start/End: Original strand, 29286097 - 29286143
Alignment:
Q  702 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 749  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  29286097 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 29286143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University