View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_low_34 (Length: 311)

Name: NF17198_low_34
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_low_34
NF17198_low_34
[»] chr1 (12 HSPs)
chr1 (22-311)||(18434270-18434559)
chr1 (22-306)||(18402988-18403272)
chr1 (177-311)||(18420801-18420935)
chr1 (165-223)||(41505762-41505820)
chr1 (165-198)||(10199332-10199365)
chr1 (228-308)||(16793362-16793441)
chr1 (165-197)||(50644179-50644211)
chr1 (165-198)||(6292605-6292638)
chr1 (165-198)||(15784430-15784463)
chr1 (167-199)||(29793624-29793656)
chr1 (165-201)||(42575393-42575429)
chr1 (266-310)||(44422689-44422733)
[»] chr2 (5 HSPs)
chr2 (165-198)||(18179062-18179095)
chr2 (165-198)||(30990363-30990396)
chr2 (165-198)||(31561666-31561699)
chr2 (227-307)||(680496-680576)
chr2 (166-198)||(2416426-2416458)
[»] chr5 (5 HSPs)
chr5 (212-262)||(7674686-7674736)
chr5 (165-199)||(11615578-11615612)
chr5 (201-310)||(38766516-38766625)
chr5 (165-201)||(41419429-41419465)
chr5 (165-201)||(41534548-41534584)
[»] chr8 (4 HSPs)
chr8 (165-198)||(18331827-18331860)
chr8 (169-198)||(35534541-35534570)
chr8 (165-198)||(38602440-38602473)
chr8 (165-198)||(43368624-43368657)
[»] chr7 (4 HSPs)
chr7 (165-198)||(8427126-8427159)
chr7 (165-198)||(24975989-24976022)
chr7 (166-199)||(25833421-25833454)
chr7 (156-192)||(40598400-40598436)
[»] chr6 (3 HSPs)
chr6 (165-198)||(12111080-12111113)
chr6 (166-199)||(30784655-30784688)
chr6 (165-198)||(31338090-31338123)
[»] chr4 (4 HSPs)
chr4 (165-198)||(9720578-9720611)
chr4 (165-198)||(22662175-22662208)
chr4 (165-198)||(22666654-22666687)
chr4 (165-198)||(27043754-27043787)
[»] chr3 (4 HSPs)
chr3 (165-198)||(584159-584192)
chr3 (166-199)||(41848641-41848674)
chr3 (165-197)||(26990149-26990181)
chr3 (166-198)||(31403472-31403504)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 18434270 - 18434559
Alignment:
22 tgatattcattcaaatatatggttcgagttaaaataattaccaaccgatgcatcaattcatcattgcttcaacttattttgaacaaatgtttctgctatc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||  |||||| ||||||||||||||||||||||||||    
18434270 tgatattcattcaaatatatggttcgagttaaaataattaccaagtgaggcatcaattcatcattttttcaacatattttgaacaaatgtttctgctatc 18434369  T
122 atgacaagtcttagaatttgggcttataactaggagtgtgtacggattgacttatttgagcttatctactaacataaattgtttgggaggacttatggaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||| ||    
18434370 atgacaagtcttagaatttgggcttataactaggagtgtgtacgcatagacttatttgagcttatctattaacataaactgtttgggaggacttatgaaa 18434469  T
222 acgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttatatgag 311  Q
    | |||||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||    
18434470 atgatttatgacctgtttataaactgttctcaacttatttttgtaagctctccaggataacttgtgaaaatagcatatagcttatatgag 18434559  T

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Target: chr1; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 306
Target Start/End: Original strand, 18402988 - 18403272
Alignment:
22 tgatattcattcaaatatatggttcgagttaaaataattaccaaccgatgcatcaattcatcattgcttcaacttattttgaacaaatgtttctgctatc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| |  |||||| |||    
18402988 tgatattcattcaaatatatggttcgagttaaaataattaccaagtgaggcatcaattcatcattgcttcaacttattttgaacaattaattctgccatc 18403087  T
122 atgacaagtcttagaatttgggcttataactaggagtgtgtacggattgacttatttgagcttatctactaacataaattgtttgggaggacttatggaa 221  Q
    ||||||| |||||||||||||||||| ||||||||| || |  ||||||||||||||||||||| |||||  ||| || |||||||||   |||||||||    
18403088 atgacaaatcttagaatttgggcttaaaactaggagcgtatttggattgacttatttgagcttacctactgtcattaactgtttgggatagcttatggaa 18403187  T
222 acgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttat 306  Q
    || |||| ||||||||||||||| ||||||||||||||||||| |||||||| || ||| ||  | |||||||||||||||||||    
18403188 acaatttgtgacatgtttataaattgttctcaacttatttttgtaagctctccagaatagctcatgaaaatagcatatagcttat 18403272  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 311
Target Start/End: Original strand, 18420801 - 18420935
Alignment:
177 ttgagcttatctactaacataaattgtttgggaggacttatggaaacgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgag 276  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |     
18420801 ttgagcttatctactaacatactctgtttgggaggacttatggaaacgatttatgacatgtttataaagtgttctcaacttatttttgtaagctctccaa 18420900  T
277 gataacttgtaaaaatagcatatagcttatatgag 311  Q
    |||||||||| ||||||||||||||||||||||||    
18420901 gataacttgtgaaaatagcatatagcttatatgag 18420935  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 41505820 - 41505762
Alignment:
165 ggattgacttatttgagcttatctactaacataaattgtttgggaggacttatggaaac 223  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||| ||||||| ||||    
41505820 ggattggcttatttgagcttatctactgacataagttgtttgggagaacttatgaaaac 41505762  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 10199332 - 10199365
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||||||||||||||||||||    
10199332 ggattgacttatttgagcttatctactaacataa 10199365  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 16793441 - 16793362
Alignment:
228 tatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttatat 308  Q
    ||||||||||  ||||| |||| ||||||||||| | ||||||||| || ||||| ||| |||||||| ||||||||||||    
16793441 tatgacatgtccataaattgtt-tcaacttatttctacaagctctccagaataacatgtgaaaatagcttatagcttatat 16793362  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 50644179 - 50644211
Alignment:
165 ggattgacttatttgagcttatctactaacata 197  Q
    |||||||||||||||||||||||||||||||||    
50644179 ggattgacttatttgagcttatctactaacata 50644211  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 6292638 - 6292605
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||||||||||||| ||||||    
6292638 ggattgacttatttgagcttatctactgacataa 6292605  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 15784463 - 15784430
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    |||| |||||||||||||||||||||||||||||    
15784463 ggatcgacttatttgagcttatctactaacataa 15784430  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 29793624 - 29793656
Alignment:
167 attgacttatttgagcttatctactaacataaa 199  Q
    ||||||||||||||||||||||||| |||||||    
29793624 attgacttatttgagcttatctactgacataaa 29793656  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Original strand, 42575393 - 42575429
Alignment:
165 ggattgacttatttgagcttatctactaacataaatt 201  Q
    |||||| ||||||||||||||||||||| ||||||||    
42575393 ggattgccttatttgagcttatctactagcataaatt 42575429  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 44422733 - 44422689
Alignment:
266 aagctctcgaggataacttgtaaaaatagcatatagcttatatga 310  Q
    |||||||| |||||| ||| |||||||||| ||||||||||||||    
44422733 aagctctccaggatagcttataaaaatagcttatagcttatatga 44422689  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 18179095 - 18179062
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||||||||||||||||||||    
18179095 ggattgacttatttgagcttatctactaacataa 18179062  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 30990363 - 30990396
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    |||||| |||||||||||||||||||||||||||    
30990363 ggattggcttatttgagcttatctactaacataa 30990396  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 31561666 - 31561699
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||| ||||||||||||||||    
31561666 ggattgacttatttgagattatctactaacataa 31561699  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 680576 - 680496
Alignment:
227 ttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatatagcttata 307  Q
    |||||||||||||||||| |||| ||| ||||||||  |||| |||  | |||| ||| | |||||||| |||||||||||    
680576 ttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttatgaaaatagcttatagcttata 680496  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 2416458 - 2416426
Alignment:
166 gattgacttatttgagcttatctactaacataa 198  Q
    |||||||||||||||| ||||||||||||||||    
2416458 gattgacttatttgagtttatctactaacataa 2416426  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 7674736 - 7674686
Alignment:
212 acttatggaaacgatttatgacatgtttataaagtgttctcaacttatttt 262  Q
    |||||||||||| | ||||||||||||||||| ||||| ||| ||||||||    
7674736 acttatggaaacaacttatgacatgtttataaggtgttttcagcttatttt 7674686  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 11615578 - 11615612
Alignment:
165 ggattgacttatttgagcttatctactaacataaa 199  Q
    |||||| ||||||||||||||||||||||||||||    
11615578 ggattggcttatttgagcttatctactaacataaa 11615612  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 310
Target Start/End: Original strand, 38766516 - 38766625
Alignment:
201 tgtttgggaggacttatggaaacgatttatgacatgtttataaagtgttctcaacttatttttgcaagctctcgaggataacttgtaaaaatagcatata 300  Q
    ||||||| || |||||||||||| | |||||||| ||  ||||  |||| || |||||||||   ||||  |||||| |||||||| |||||||  ||||    
38766516 tgtttggaagaacttatggaaacaacttatgacacgtccataagttgttttcgacttattttcaaaagccttcgaggttaacttgtgaaaatagtttata 38766615  T
301 gcttatatga 310  Q
    ||||||||||    
38766616 gcttatatga 38766625  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 41419465 - 41419429
Alignment:
165 ggattgacttatttgagcttatctactaacataaatt 201  Q
    ||||||||||||||||||| ||||||| |||||||||    
41419465 ggattgacttatttgagctaatctactgacataaatt 41419429  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 41534584 - 41534548
Alignment:
165 ggattgacttatttgagcttatctactaacataaatt 201  Q
    ||||||||||||||||||| ||||||| |||||||||    
41534584 ggattgacttatttgagctaatctactgacataaatt 41534548  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 18331860 - 18331827
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    |||||||||||||||| |||||||||||||||||    
18331860 ggattgacttatttgatcttatctactaacataa 18331827  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 35534541 - 35534570
Alignment:
169 tgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||||||||||||||||    
35534541 tgacttatttgagcttatctactaacataa 35534570  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 38602473 - 38602440
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||||||||||||| ||||||    
38602473 ggattgacttatttgagcttatctactgacataa 38602440  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 43368624 - 43368657
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    |||||||||||||||| |||||||||||||||||    
43368624 ggattgacttatttgatcttatctactaacataa 43368657  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 8427159 - 8427126
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||| ||||||||||||||||||||||||||    
8427159 ggattgatttatttgagcttatctactaacataa 8427126  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 24976022 - 24975989
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||| ||||||||||||||||||||||||    
24976022 ggattgactaatttgagcttatctactaacataa 24975989  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 25833454 - 25833421
Alignment:
166 gattgacttatttgagcttatctactaacataaa 199  Q
    ||||||||||||||| ||||||||||||||||||    
25833454 gattgacttatttgaacttatctactaacataaa 25833421  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 40598400 - 40598436
Alignment:
156 agtgtgtacggattgacttatttgagcttatctacta 192  Q
    |||||||  ||||||||||||||||||||||||||||    
40598400 agtgtgtttggattgacttatttgagcttatctacta 40598436  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 12111113 - 12111080
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    |||||||||||||||||||||||||||| |||||    
12111113 ggattgacttatttgagcttatctactagcataa 12111080  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 30784688 - 30784655
Alignment:
166 gattgacttatttgagcttatctactaacataaa 199  Q
    ||||||||||||||||||||||||||| ||||||    
30784688 gattgacttatttgagcttatctactatcataaa 30784655  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 31338123 - 31338090
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    |||||||||||||||||||||||||||| |||||    
31338123 ggattgacttatttgagcttatctactagcataa 31338090  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 9720578 - 9720611
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||| ||||||||||||||||    
9720578 ggattgacttatttgagtttatctactaacataa 9720611  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 22662175 - 22662208
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||| ||||||||||||||||    
22662175 ggattgacttatttgagtttatctactaacataa 22662208  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 22666654 - 22666687
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||| ||||||||||||||||    
22666654 ggattgacttatttgagtttatctactaacataa 22666687  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 27043754 - 27043787
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    ||||||||||||||||||||||||||| ||||||    
27043754 ggattgacttatttgagcttatctactgacataa 27043787  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 584192 - 584159
Alignment:
165 ggattgacttatttgagcttatctactaacataa 198  Q
    |||||||||||||||||||||||||||| |||||    
584192 ggattgacttatttgagcttatctactagcataa 584159  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 41848641 - 41848674
Alignment:
166 gattgacttatttgagcttatctactaacataaa 199  Q
    |||||||||||||||| |||||||||||||||||    
41848641 gattgacttatttgagtttatctactaacataaa 41848674  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 26990149 - 26990181
Alignment:
165 ggattgacttatttgagcttatctactaacata 197  Q
    ||||||||||||||||||||||||||| |||||    
26990149 ggattgacttatttgagcttatctactgacata 26990181  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 31403504 - 31403472
Alignment:
166 gattgacttatttgagcttatctactaacataa 198  Q
    |||||||||| ||||||||||||||||||||||    
31403504 gattgacttacttgagcttatctactaacataa 31403472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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