View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_37 (Length: 293)
Name: NF17198_low_37
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 21549189 - 21548911
Alignment:
| Q |
1 |
tttgctagagcgatttttatagtcaagaattttagcctcacgatccttccaagccttattcgtatacaaagtaccatcacgacgcttataccaaaatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21549189 |
tttgctagagcgatttttatagtcaagaattttagcctcacgatccttccaagccttatttgtatacaaagtaccatcacgacgcttataccaaaatgga |
21549090 |
T |
|
| Q |
101 |
aaactgtcattgtcatgcacagacaagttatcctcgtcttcctcactatactcagaatcatctggatccggtttcggttccgatttcagccgtttctcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549089 |
aaactgtcattgtcatgcacagacaagttatcctcgtcttcctcactatactcagaatcatctggatccggtttcggttccgatttcagccgtttctcct |
21548990 |
T |
|
| Q |
201 |
cctcctccacagatgaatcttgtttcatgaattgctgcttatcctcctcatcctcatatgaatcttcatcgtgtctctg |
279 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
21548989 |
cctcctccacagatgaatcttatttcatgaatttctgcttatcctcctcatcctcatatgaatcttcattgtgtttctg |
21548911 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 44313743 - 44313713
Alignment:
| Q |
86 |
ttataccaaaatggaaaactgtcattgtcat |
116 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
44313743 |
ttataccaaaatggaaaactgtcattgtcat |
44313713 |
T |
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