View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_low_39 (Length: 278)

Name: NF17198_low_39
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_low_39
NF17198_low_39
[»] chr2 (13 HSPs)
chr2 (5-268)||(41969291-41969553)
chr2 (40-169)||(147206-147335)
chr2 (28-176)||(17560790-17560939)
chr2 (10-176)||(140914-141080)
chr2 (89-244)||(41501050-41501201)
chr2 (53-200)||(40800127-40800273)
chr2 (43-164)||(36069336-36069458)
chr2 (70-176)||(32071317-32071428)
chr2 (142-176)||(13779129-13779163)
chr2 (28-126)||(32648163-32648260)
chr2 (88-122)||(45258126-45258160)
chr2 (88-136)||(23257850-23257898)
chr2 (27-63)||(44942914-44942950)
[»] chr1 (4 HSPs)
chr1 (28-169)||(30732551-30732692)
chr1 (28-132)||(5696744-5696848)
chr1 (88-124)||(21682564-21682600)
chr1 (88-133)||(32875451-32875496)
[»] chr5 (1 HSPs)
chr5 (43-176)||(34443312-34443447)
[»] chr4 (6 HSPs)
chr4 (72-170)||(33085794-33085891)
chr4 (42-132)||(35043060-35043150)
chr4 (89-132)||(43543272-43543315)
chr4 (88-122)||(50151778-50151812)
chr4 (71-164)||(53402529-53402622)
chr4 (41-101)||(5321881-5321941)
[»] chr3 (4 HSPs)
chr3 (28-204)||(5528292-5528468)
chr3 (71-132)||(35314083-35314144)
chr3 (107-204)||(27158271-27158368)
chr3 (70-163)||(49317600-49317692)
[»] chr6 (3 HSPs)
chr6 (85-176)||(4380313-4380404)
chr6 (88-170)||(11714205-11714287)
chr6 (43-132)||(30655834-30655923)
[»] scaffold0012 (1 HSPs)
scaffold0012 (41-140)||(243942-244041)
[»] chr8 (3 HSPs)
chr8 (28-123)||(15663499-15663594)
chr8 (78-133)||(23129392-23129447)
chr8 (88-126)||(26999204-26999242)
[»] scaffold0002 (1 HSPs)
scaffold0002 (88-124)||(120985-121021)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 268
Target Start/End: Complemental strand, 41969553 - 41969291
Alignment:
Q  5 tacaacttatgtcgtacgtgtatcctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactt 104  Q
    |||| ||||||||||| |||| ||||  |||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41969553 tacagcttatgtcgtatgtgtgtcctttaacggctttctgatgaggcgctgtatttcacataaatagttagcacctccttcctctatataagggtgactt 41969454  T
Q  105 tgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcctgcag 204  Q
     |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||  | ||||||||||||    
T  41969453 cgcgtcaccctcaaggtacgatatatttttccacactttttacccattcaacctcatttcttacactgacttggatgttgaagt-ttgatgtgcctgcag 41969355  T
Q  205 gcaggcaccctccgttccaccacaaagacttcgtcgccacttcaccgttaccgtaaccttcatc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41969354 gcaggcaccctccgttccaccacaaagacttcgtcgccacttcaccgttaccgtaaccttcatc 41969291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 147335 - 147206
Alignment:
Q  40 tcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccaca 139  Q
    |||||| ||||| |||||||||||  || | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||  | |||||| |||||    
T  147335 tcctgacgaggcaccacatttcacgaaagtggttagcgcctccttcctctatataagggtgaccttgcgtcaccctcaaggtacgtttcattttcccaca 147236  T
Q  140 ctttttacccattcaacctcatttcttaca 169  Q
      |||||| |||||||||||| ||| ||||    
T  147235 tattttacacattcaacctcacttcctaca 147206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 17560939 - 17560790
Alignment:
Q  28 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 127  Q
    ||||||||||||  |||||||||| || | |||||   || | |||||| ||||||||  |||||||||||||| | ||||||||||||||||||||||     
T  17560939 cctccaacggctctctgatgaggctccgcgtttcatggaatttgttagcgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacaatt 17560840  T
Q  128 catttttccacac-tttttacccattcaacctcatttcttacactaactt 176  Q
    ||||||||||||| || |||| |||||||||||||||| |||||| ||||    
T  17560839 catttttccacacattcttacacattcaacctcatttcctacactgactt 17560790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 140914 - 141080
Alignment:
Q  10 cttatgtcgtacgtgtatcctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgt 109  Q
    |||| ||||||| |||  ||| ||||| | |||| |||||||||||||||||||  ||   ||||||||||||||||| |||||||||| |||| || ||    
T  140914 cttacgtcgtacatgtggccttcaacgccctcctcatgaggcgccacatttcacggaagcggttagcacctccttcctttatataagggagactatgtgt 141013  T
Q  110 caccctcaaggtacaatacatttttccacactttttacccattcaacctcatttcttacactaactt 176  Q
    |||| |  |||||  || |||| | ||||||||||||| ||||||||||| ||||||| ||| ||||    
T  141014 caccttataggtatgattcattatcccacactttttacacattcaacctcgtttcttatactgactt 141080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 244
Target Start/End: Original strand, 41501050 - 41501201
Alignment:
Q  89 tatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttcttacactaacttagatgttgaag 187  Q
    |||||||| ||| ||  |||||||||||||||||| || || ||| |||||| ||||||| |||| ||||||||||| |||||| ||||   ||||  |     
T  41501050 tatataagagtgtctccgcgtcaccctcaaggtacgattca-tttcccacacttttttacacattaaacctcatttcctacactgacttgagtgttagat 41501148  T
Q  188 tgcttatgtgcctgcaggcaggcaccctccgttccaccacaaagacttcgtcgccac 244  Q
    |||| ||||||||    |||||||||||||||||||||||||||||||| |||||||    
T  41501149 tgctaatgtgcct----gcaggcaccctccgttccaccacaaagacttcatcgccac 41501201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 200
Target Start/End: Complemental strand, 40800273 - 40800127
Alignment:
Q  53 ccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt-ttccacactttttacccat 151  Q
    |||||||||||  || | ||||||| |||||||  |||||||||||||| || |||||||||||||||||| || |||||  ||||||| |||||| ||     
T  40800273 ccacatttcacggaagtcgttagcatctccttctcctatataagggtgatttcgcgtcaccctcaaggtacgattcatttcctccacac-ttttacacaa 40800175  T
Q  152 tcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcct 200  Q
    ||||| ||||||| |||||||| ||  | ||||||||||| | ||||||    
T  40800174 tcaacatcatttc-tacactaatttgaacgttgaagtgctaacgtgcct 40800127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 36069458 - 36069336
Alignment:
Q  43 tgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttc-cacact 141  Q
    |||||||||||| ||||||||  ||  ||||||| |||||||||||| |  || || |||| |||||||||||||||||||||| |||||  |  ||| |    
T  36069458 tgatgaggcgccgcatttcacggaagcagttagcgcctccttcctctttcgaaaggcgactctgcgtcaccctcaaggtacaattcatttcccaaacatt 36069359  T
Q  142 ttttacccattcaacctcatttc 164  Q
    | |||| ||||||||||||||||    
T  36069358 tcttacacattcaacctcatttc 36069336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 32071317 - 32071428
Alignment:
Q  70 agttagcacctccttcctctatata--agggtga-ctttgcgtcaccctcaaggtacaatacatttttcc-acac-tttttacccattcaacctcatttc 164  Q
    |||||||||||||||||| ||||||  ||||| | || |||||| |||||||||||  || ||||||||| | || ||||||| |||||||||||||||     
T  32071317 agttagcacctccttcctatatatataagggtaatctctgcgtcgccctcaaggtatgattcatttttcctatacatttttacacattcaacctcatttt 32071416  T
Q  165 ttacactaactt 176  Q
     |||||||||||    
T  32071417 atacactaactt 32071428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 13779129 - 13779163
Alignment:
Q  142 ttttacccattcaacctcatttcttacactaactt 176  Q
    |||||| ||||||||||||||||||||||||||||    
T  13779129 ttttacacattcaacctcatttcttacactaactt 13779163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 32648260 - 32648163
Alignment:
Q  28 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaat 126  Q
    |||||||| ||||||||||||||| ||| |||||||  ||   |||||||| ||||||  |||||||| |||||||   ||||||| ||||||||||||    
T  32648260 cctccaacagcttcctgatgaggcacca-atttcacggaagccgttagcacatccttctcctatataaaggtgactcaacgtcaccttcaaggtacaat 32648163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 45258126 - 45258160
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggta 122  Q
    |||||||||||||||||||| ||||||||||||||    
T  45258126 ctatataagggtgactttgcttcaccctcaaggta 45258160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 23257898 - 23257850
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggtacaatacatttttcc 136  Q
    ||||||||||||||| |||  |||||||||||||||||| || ||||||    
T  23257898 ctatataagggtgaccttgattcaccctcaaggtacaattcacttttcc 23257850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 44942950 - 44942914
Alignment:
Q  27 tcctccaacggcttcctgatgaggcgccacatttcac 63  Q
    |||||||||||| |||||||||||| |||||||||||    
T  44942950 tcctccaacggcctcctgatgaggcaccacatttcac 44942914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 30732692 - 30732551
Alignment:
Q  28 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 127  Q
    |||| |||||| || |||||||||||||||||||| | ||  ||||||| |||||| | ||||||||||||||||| ||| ||||||| ||||||||||     
T  30732692 cctctaacggcctcttgatgaggcgccacatttcataaaagcagttagctcctcctccttctatataagggtgactctgcatcacccttaaggtacaatg 30732593  T
Q  128 catttttccacactttttacccattcaacctcatttcttaca 169  Q
    |||||  ||||| |||| ||  ||||||||||||||| ||||    
T  30732592 catttgcccacaattttgacaaattcaacctcatttcctaca 30732551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 132
Target Start/End: Original strand, 5696744 - 5696848
Alignment:
Q  28 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 127  Q
    ||||||||||||  | ||||||||||| |||||||||||| | |||||| |||||| || ||||||||||| || | ||||||||||||||||||| ||     
T  5696744 cctccaacggctctcggatgaggcgccgcatttcacataatttgttagcgcctcctccccctatataagggcgattctgcgtcaccctcaaggtacgatt 5696843  T
Q  128 cattt 132  Q
    |||||    
T  5696844 cattt 5696848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 21682564 - 21682600
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggtaca 124  Q
    |||||||||||||| ||||||||||||||||||||||    
T  21682564 ctatataagggtgaatttgcgtcaccctcaaggtaca 21682600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 32875451 - 32875496
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggtacaatacatttt 133  Q
    ||||||||||||||||   |||||||||||||||||||| ||||||    
T  32875451 ctatataagggtgactcaacgtcaccctcaaggtacaattcatttt 32875496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 34443447 - 34443312
Alignment:
Q  43 tgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaa-tacatttttccacac- 140  Q
    ||||||||| |||||||||||  ||  ||||||  ||||||| |||| |||||||| |||| ||||||||||||||||||||| | |||||| ||||||     
T  34443447 tgatgaggctccacatttcacggaagcagttagagcctcctttctctgtataagggcgactctgcgtcaccctcaaggtacaatttcattttcccacaca 34443348  T
Q  141 tttttacccattcaacctcatttcttacactaactt 176  Q
     |||||| |||||||| ||||||| |||||| ||||    
T  34443347 cttttacacattcaacttcatttcctacactgactt 34443312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 33085794 - 33085891
Alignment:
Q  72 ttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcatttcttacac 170  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||| |||| || |||||| ||||| |||||||   |||||||||||||| |||||    
T  33085794 ttagcacctccgtcctctatgtaagggtgacttcgcgtcaccctcaa-gtaccattcattttcccacattttttacgtgttcaacctcatttcctacac 33085891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 35043060 - 35043150
Alignment:
Q  42 ctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt 132  Q
    ||||||||||||| |||| |||  || |||||||| |||||||||||||||||| |||||||  ||||||||||||| |||| || |||||    
T  35043060 ctgatgaggcgccgcattacacggaagtagttagcgcctccttcctctatataatggtgactccgcgtcaccctcaatgtacgattcattt 35043150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 43543272 - 43543315
Alignment:
Q  89 tatataagggtgactttgcgtcaccctcaaggtacaatacattt 132  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||    
T  43543272 tatataaggatgactttgcgtcaccctcaagatacaattcattt 43543315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 122
Target Start/End: Original strand, 50151778 - 50151812
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggta 122  Q
    |||||||||||||||||||| ||||||||||||||    
T  50151778 ctatataagggtgactttgcttcaccctcaaggta 50151812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 53402622 - 53402529
Alignment:
Q  71 gttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttc 164  Q
    |||||| |||| |||  |||||||||||||| || |||||||||||||||||| || || ||| ||||||  |||||| |||||| |||||||||    
T  53402622 gttagcgcctcattctcctatataagggtgatttcgcgtcaccctcaaggtacgattca-tttcccacacacttttacacattcatcctcatttc 53402529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 5321881 - 5321941
Alignment:
Q  41 cctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtga 101  Q
    |||||||||||||||||||||||| || | |||||   ||||||| ||||||||| |||||    
T  5321881 cctgatgaggcgccacatttcacagaagtcgttagtgtctccttcttctatataaaggtga 5321941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 5528292 - 5528468
Alignment:
Q  28 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaata 127  Q
    |||||||| ||| ||| |||| ||||| ||| ||||| | |  ||| || ||||||||  |||||||||||||| | ||||||||||||||||||| ||     
T  5528292 cctccaacagctccctaatgaagcgccgcatctcacaaagaccgttggcgcctccttctcctatataagggtgattctgcgtcaccctcaaggtacgatt 5528391  T
Q  128 catttttc-cacactttttacccattcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcctgcag 204  Q
     |||| || ||||| |||||| |||||||||||||||| ||| || |||| | ||||| | |||| | ||||||||||    
T  5528392 tatttctcacacac-ttttacacattcaacctcatttcctactctgacttgggtgttggaatgctaacgtgcctgcag 5528468  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 35314083 - 35314144
Alignment:
Q  71 gttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt 132  Q
    |||||| |||| |||||||||||||||| ||||| |||||||||||||||||| || |||||    
T  35314083 gttagcgcctcattcctctatataagggagacttagcgtcaccctcaaggtacgattcattt 35314144  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 27158368 - 27158271
Alignment:
Q  107 cgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttcttacactaacttagatgttgaagtgcttatgtgcctgcag 204  Q
    |||||||||||||||||||| || ||| ||||||  |||||| |||||||||| ||||| |||||| |||||  ||||| |||||| | ||| ||||||    
T  27158368 cgtcaccctcaaggtacaattca-tttcccacacacttttacacattcaaccttatttcgtacactgacttaagtgttggagtgctaaagtgtctgcag 27158271  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 49317692 - 49317600
Alignment:
Q  70 agttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcattt 163  Q
    ||||||| ||| | ||||||||||||| ||||||  ||||| ||||||||| || || ||||||||   ||||||||| |||| ||||||||||    
T  49317692 agttagcgccttcgtcctctatataagagtgactccgcgtc-ccctcaaggcaccattcatttttctgtactttttacacatttaacctcattt 49317600  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 4380404 - 4380313
Alignment:
Q  85 cctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacactttttacccattcaacctcatttcttacactaactt 176  Q
    ||||||||||||| |||||  |||||| ||||||||||| || |||||| | ||||||||||| ||||||||| | ||||  ||||||||||    
T  4380404 cctctatataaggatgactccgcgtcatcctcaaggtaccattcattttcctacactttttacacattcaaccccgtttccaacactaactt 4380313  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 11714287 - 11714205
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac-tttttacccattcaacctcatttcttacac 170  Q
    ||||||||||||||||   |||||||||||||||||||| || ||| ||| || ||||||| |||||||||||||||| |||||    
T  11714287 ctatataagggtgactccacgtcaccctcaaggtacaattca-tttcccatacatttttacacattcaacctcatttcctacac 11714205  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 30655923 - 30655834
Alignment:
Q  43 tgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacattt 132  Q
    |||||||||||| ||||||||  || |  |||||| ||||||| | ||||||||||||| |  || |||||||||||||||||| |||||    
T  30655923 tgatgaggcgccgcatttcacggaattctttagcatctccttcttgtatataagggtgattccgcatcaccctcaaggtacaattcattt 30655834  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 244041 - 243942
Alignment:
Q  41 cctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttttccacac 140  Q
    |||||||||||| ||||||||||| ||  |||||||  ||||||||||||| || |||||| |   | ||||| ||||||||| || |||||| ||||||    
T  244041 cctgatgaggcgacacatttcacagaagcagttagcgtctccttcctctatttacgggtgagtccacatcaccttcaaggtacgattcattttcccacac 243942  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 15663499 - 15663594
Alignment:
Q  28 cctccaacggcttcctgatgaggcgccacatttcacataaatagttagcacctccttcctctatataagggtgactttgcgtcaccctcaaggtac 123  Q
    |||||||||||| |||||||||||||  ||||||||  || | ||||||| | | |||  |||||||||| |||||   |||||||||||||||||    
T  15663499 cctccaacggctccctgatgaggcgctgcatttcacggaagtcgttagcatcactttcacctatataaggatgactcaacgtcaccctcaaggtac 15663594  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 23129447 - 23129392
Alignment:
Q  78 cctccttcctctatataagggtgactttgcgtcaccctcaaggtacaatacatttt 133  Q
    |||||||| |||||||||||||||||| |||||||||| || |||| || ||||||    
T  23129447 cctccttcgtctatataagggtgacttggcgtcaccctgaaagtacgattcatttt 23129392  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 26999242 - 26999204
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggtacaat 126  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  26999242 ctatataagggtgacttagcatcaccctcaaggtacaat 26999204  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 120985 - 121021
Alignment:
Q  88 ctatataagggtgactttgcgtcaccctcaaggtaca 124  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  120985 ctatataagggtgaatttgcttcaccctcaaggtaca 121021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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