View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_41 (Length: 269)
Name: NF17198_low_41
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 13263869 - 13264118
Alignment:
| Q |
14 |
aaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaat |
113 |
Q |
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| T |
13263869 |
aaataaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaat |
13263968 |
T |
|
| Q |
114 |
aac-aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata----nnnnnnnngagggaatataccatccatattt |
208 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
13263969 |
aacaaatttttttaactccattatataagtaactcgcccaattgaatttgtatataccatccatattttttttttttgagggaatataccaaccatattt |
13264068 |
T |
|
| Q |
209 |
cttttgattg------gatcatgacaggagttagaatggtgggtttacct |
252 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
13264069 |
cttttgattggatattgatcatgacaggagttagaatggtaggtttacct |
13264118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 29255331 - 29255082
Alignment:
| Q |
14 |
aaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaat |
113 |
Q |
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| T |
29255331 |
aaataaagacattctccaattattctcccttaattaaacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaat |
29255232 |
T |
|
| Q |
114 |
aac-aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata----nnnnnnnngagggaatataccatccatattt |
208 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29255231 |
aacaaaaaattttaactccattatataagtaactcgcccaattgaatttgtatataccatccatatttttttttttttagggaatataccatccatattt |
29255132 |
T |
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| Q |
209 |
cttttgattg------gatcatgacaggagttagaatggtgggtttacct |
252 |
Q |
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| T |
29255131 |
cttttgattggatattgatcatgacaggagttagaatggtaggtttacct |
29255082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 32526922 - 32527168
Alignment:
| Q |
14 |
aaataaaaactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaat |
113 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
32526922 |
aaataaagactttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgttttttatttcagttaaaat |
32527021 |
T |
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| Q |
114 |
aac--aannnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccatannnnnnnngagggaatataccatccatatttctt |
211 |
Q |
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||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32527022 |
aacaaaaaaaatttaactccattatataagtaactcgcccaattgaatttctatataccatccatatttttttttagggaatataccatccatatttctt |
32527121 |
T |
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| Q |
212 |
ttgattgg------atcatgacaggagttagaatggtgggtttacct |
252 |
Q |
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| T |
32527122 |
ttgattggatattaatcatgacaagagttagaatggtaggtttacct |
32527168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 252
Target Start/End: Original strand, 30617535 - 30617776
Alignment:
| Q |
22 |
actttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgtttgtttttaatttcagttaaaataacaa--- |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30617535 |
actttctccaattattctcccttaattacacaaaaatctcgttcctcttaaactcactcttaaatgtgttcgtttttaatttcagttaaaataacaaatt |
30617634 |
T |
|
| Q |
119 |
nnnnnnnaactccattatataagtaactcgcccaattgaatttgtatataccatccata--nnnnnnnngagggaatataccatccatatttcttttgat |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30617635 |
tttttttaactccattatataagtaactcgcccaattgaattggtatataccatccatattttttttttgagggaatataccatccatatttcttttgat |
30617734 |
T |
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| Q |
217 |
tg------gatcatgacaggagttagaatggtgggtttacct |
252 |
Q |
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| T |
30617735 |
tggatattgatcatgagaggagttagaatggtaggtttacct |
30617776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 14125656 - 14125605
Alignment:
| Q |
126 |
aactccattatataagtaactcgcccaattgaatttgtatataccatccata |
177 |
Q |
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||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
14125656 |
aactccattatataagtaacttgcccaattgattttgaatataccatccata |
14125605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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