View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17198_low_48 (Length: 202)

Name: NF17198_low_48
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17198_low_48
NF17198_low_48
[»] chr1 (7 HSPs)
chr1 (2-160)||(34655049-34655207)
chr1 (23-163)||(34118087-34118229)
chr1 (1-171)||(39708880-39709050)
chr1 (26-171)||(615823-615965)
chr1 (23-64)||(11407951-11407992)
chr1 (3-62)||(26236643-26236702)
chr1 (1-36)||(34118042-34118077)
[»] chr6 (4 HSPs)
chr6 (23-171)||(21881582-21881730)
chr6 (24-163)||(20740694-20740832)
chr6 (1-36)||(21881537-21881572)
chr6 (1-36)||(20740648-20740683)
[»] chr2 (10 HSPs)
chr2 (23-171)||(17375392-17375540)
chr2 (23-163)||(1895525-1895665)
chr2 (22-163)||(1551466-1551606)
chr2 (22-163)||(17281812-17281952)
chr2 (1-75)||(3921662-3921736)
chr2 (26-171)||(4869707-4869849)
chr2 (126-171)||(34660414-34660459)
chr2 (1-36)||(17375347-17375382)
chr2 (87-163)||(4140576-4140651)
chr2 (1-36)||(17281961-17281996)
[»] chr5 (10 HSPs)
chr5 (1-163)||(41355413-41355575)
chr5 (23-156)||(7766879-7767012)
chr5 (23-171)||(27169947-27170096)
chr5 (27-171)||(7271893-7272034)
chr5 (26-171)||(6030249-6030391)
chr5 (22-154)||(18697047-18697181)
chr5 (26-171)||(26656827-26656969)
chr5 (26-171)||(26928414-26928556)
chr5 (1-36)||(18697003-18697038)
chr5 (2-36)||(7767022-7767056)
[»] chr4 (6 HSPs)
chr4 (22-171)||(23054093-23054242)
chr4 (29-163)||(53202387-53202521)
chr4 (22-163)||(47518318-47518459)
chr4 (23-87)||(6410106-6410171)
chr4 (27-64)||(24957572-24957609)
chr4 (1-36)||(47518468-47518503)
[»] chr7 (1 HSPs)
chr7 (23-171)||(3302690-3302838)
[»] chr8 (5 HSPs)
chr8 (25-171)||(10408942-10409088)
chr8 (36-171)||(5994757-5994893)
chr8 (24-80)||(6444151-6444208)
chr8 (3-36)||(10408897-10408930)
chr8 (1-36)||(5994700-5994735)
[»] chr3 (1 HSPs)
chr3 (26-81)||(18269711-18269766)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 2 - 160
Target Start/End: Original strand, 34655049 - 34655207
Alignment:
Q  2 ttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||  ||||||||| |||||||     
T  34655049 ttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaaaagagaaaacaaatcaaatagtctgagac 34655148  T
Q  102 ccacgaaaaccacacaatcgctggcaagcatccaacgacacaccacgaaacccaccaac 160  Q
    |||||||||||| |||| | | || ||||||||||||||||||||||||||| ||||||    
T  34655149 ccacgaaaaccaaacaaacaccggaaagcatccaacgacacaccacgaaaccaaccaac 34655207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 34118087 - 34118229
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccaccatag--ccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatc 120  Q
    |||||||||||||||||||||||||||||||||||||| |||| |   |||| ||||||||  ||||||||||||||||| |||||||||| | |||| |    
T  34118087 gatccatcaccacctatgttgcgagcaaacataacctctaccacacaaccaatagagaaaacaaatcaaataatctgagatccacgaaaactaaacaacc 34118186  T
Q  121 gctggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
     | ||||||||||||||||||||||| ||||||||||||||||    
T  34118187 accggcaagcatccaacgacacaccatgaaacccaccaacgtc 34118229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 39709050 - 39708880
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgaga 100  Q
    |||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||||||| |  ||||    
T  39709050 gttcctaagcgaacccagatacgatccatcaccacctatattgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagttcgaga 39708951  T
Q  101 gccacgaaaaccacacaatcgctggcaagcatccaacgacacaccac-gaaacccaccaacgtcccaaccaa 171  Q
     ||| |||||||| |||| | | | |||||||| ||| |||||||||  |||||||||||||||| ||||||    
T  39708950 ccca-gaaaaccaaacaaccaccgacaagcatctaacaacacaccacaaaaacccaccaacgtcctaaccaa 39708880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 615823 - 615965
Alignment:
Q  26 ccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctgg 125  Q
    ||||||||||||||||||||| ||||||||| |||||||| | ||||||||||||| |||||||||| |   ||  |||  ||||||| |||| | | |     
T  615823 ccatcaccacctatgttgcgatcaaacataatctccaccacaaccaagagagaaaacgaatcaaatagt---agctccaataaaaccaaacaaccaccga 615919  T
Q  126 caagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  615920 gaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 615965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 11407992 - 11407951
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccacc 64  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  11407992 gatccatcaccacttatgttgcgagcaaacataacctccacc 11407951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 26236702 - 26236643
Alignment:
Q  3 tcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacataacctcca 62  Q
    ||||||| ||||| |||| ||||||||||||| ||||||| |||| ||||||||||||||    
T  26236702 tcataagtgaacccagatctgatccatcaccatctatgtttcgagtaaacataacctcca 26236643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34118042 - 34118077
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  34118042 gttcataagcgaacctagatatgatccatcaccacc 34118077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 21881582 - 21881730
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgc 122  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||   |    
T  21881582 gatccatcaccacctttgttgcgagcaaacataacctccgccacagccaagagagaaaacgaatcaaatagtctgagagccacgaaaaccaaacaacgac 21881681  T
Q  123 tggcaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
     | |||||||||||||||||||||| ||| ||||||| |||||||||||    
T  21881682 cgacaagcatccaacgacacaccacaaaatccaccaatgtcccaaccaa 21881730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 20740694 - 20740832
Alignment:
Q  24 atccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgct 123  Q
    |||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||  ||||||||| | ||||| |||||||||||| |||||  |     
T  20740694 atccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaataaca 20740793  T
Q  124 ggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
     |||||||||||||||||| |||| |||||||||||||||    
T  20740794 tgcaagcatccaacgacac-ccacaaaacccaccaacgtc 20740832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21881537 - 21881572
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21881537 gttcataagcgaacctagatatgatccatcaccacc 21881572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20740648 - 20740683
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  20740648 gttcataaccgaacctagatatgatccatcaccacc 20740683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 17375392 - 17375540
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgc 122  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||| |||||||||| | |||||||||||||||||| |||| | |    
T  17375392 gatccatcaccacctatgttgtgagcaaacataacctccaccacaaccaatagagaaaacgaatcaaatagtgtgagagccacgaaaaccaaacaaccac 17375491  T
Q  123 tggcaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
     | || ||||||||||||||||||||||||||||||||||| |||||||    
T  17375492 cgacaggcatccaacgacacaccacgaaacccaccaacgtctcaaccaa 17375540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 1895525 - 1895665
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgc 122  Q
    |||| |||||||||||||||||||||| ||||||||||||||| | |||||||||||||  ||||||||| ||||||| |||| ||||||| |||| | |    
T  1895525 gatcaatcaccacctatgttgcgagcagacataacctccaccacaaccaagagagaaaagaaatcaaatagtctgagacccacaaaaaccaaacaaccac 1895624  T
Q  123 tggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
     | |||||||||||||||||||||| ||| |||||||||||    
T  1895625 cgacaagcatccaacgacacaccacaaaatccaccaacgtc 1895665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 1551606 - 1551466
Alignment:
Q  22 tgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcg 121  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||  ||||||||| ||||||| ||||||||| || |||||      
T  1551606 tgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaatagagaaaacaaatcaaatagtctgagacccacgaaaatcaaacaatta 1551507  T
Q  122 ctggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
    | ||||||||||||||||||  |||| |||||||||||||||    
T  1551506 caggcaagcatccaacgaca-tccacaaaacccaccaacgtc 1551466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 17281952 - 17281812
Alignment:
Q  22 tgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||  ||||||||| ||||||| | ||||||| || |||| |     
T  17281952 tgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatcaaatagtctgagacctacgaaaaacaaacaacca 17281853  T
Q  122 ctggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
    | || |||||| |||||| ||||||| |||||||||||||||    
T  17281852 ccggaaagcat-caacgatacaccacaaaacccaccaacgtc 17281812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3921662 - 3921736
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagag 75  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||    
T  3921662 gttcataagcgaacttagatatgatccatcaccacctatgttgcgagcaaacataacatccaccacaaccaagag 3921736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 4869707 - 4869849
Alignment:
Q  26 ccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacg--aaaaccacacaatcgct 123  Q
    ||||||||||||||||||| | ||||| |||||||||||  | ||||||||||||| |||||||||| |     |||| ||  ||||||| |||| | |     
T  4869707 ccatcaccacctatgttgctatcaaacgtaacctccaccgcaaccaagagagaaaacgaatcaaatagt-----agccccggtaaaaccaaacaaccacc 4869801  T
Q  124 ggcaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
    |  |||||||||||| ||||||||||||| ||||||||||| ||||||    
T  4869802 gagaagcatccaacgtcacaccacgaaacgcaccaacgtcctaaccaa 4869849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 34660414 - 34660459
Alignment:
Q  126 caagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||    
T  34660414 caagcatccaacgacacatcacgaaacccaccaacgttccaaccaa 34660459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17375347 - 17375382
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  17375347 gttcataagcgaacctagatatgatccatcaccacc 17375382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Original strand, 4140576 - 4140651
Alignment:
Q  87 caaataatctgagagccacgaaaaccacacaatcgctggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
    |||||| ||||||| |||||||||||| | || | | |||||||||| ||||| ||||||| |||||||||||||||    
T  4140576 caaatagtctgagacccacgaaaaccaaagaaccaccggcaagcatc-aacgatacaccacaaaacccaccaacgtc 4140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 17281996 - 17281961
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    |||||||||| |||||||||||||||||||||||||    
T  17281996 gttcataagcaaacctagatatgatccatcaccacc 17281961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 41355575 - 41355413
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgaga 100  Q
    |||||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||  |||||||||  || |||    
T  41355575 gttcatgagcgaacatagatatgatccatcaccgcctatgttgcgagcaaatataacctccaccacaaccaagagagaaaacaaatcaaatagcctaaga 41355476  T
Q  101 gccacgaaaaccacacaatcgctggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
     ||||| |||| | |||| | | |||||||||||||||||||||||| |||||||||||||||    
T  41355475 tccacggaaactaaacaaccaccggcaagcatccaacgacacaccacaaaacccaccaacgtc 41355413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 156
Target Start/End: Complemental strand, 7767012 - 7766879
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgc 122  Q
    |||| ||||||||||||||||||||||||||||||||||| || | |||||||||||||  ||||||||| ||||||| |||||||||||| |||| | |    
T  7767012 gatcaatcaccacctatgttgcgagcaaacataacctccatcacaaccaagagagaaaacaaatcaaatagtctgagacccacgaaaaccaaacaaccac 7766913  T
Q  123 tggcaagcatccaacgacacaccacgaaacccac 156  Q
     |||||||||||||||||||||||||||||||||    
T  7766912 cggcaagcatccaacgacacaccacgaaacccac 7766879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 27170096 - 27169947
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagag-aaaatgaatcaaataatctgagagccacgaaaaccacacaatcg 121  Q
    ||||||||||||| || |||||||||||||||||||||||||| | ||||||||| |||| ||||||||||  |||||| |||||||||||| |||| |     
T  27170096 gatccatcaccacttacgttgcgagcaaacataacctccaccacaaccaagagagaaaaacgaatcaaatagcctgagacccacgaaaaccaaacaacca 27169997  T
Q  122 ctggcaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
      || ||||||||| | |||||||||||||||||||||||||||||||||    
T  27169996 tcggaaagcatccagcaacacaccacgaaacccaccaacgtcccaaccaa 27169947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 7271893 - 7272034
Alignment:
Q  27 catcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctggc 126  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |   ||  |||  ||||||| |||| | ||| |    
T  7271893 catcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacgaatcaaatagt---agccccaataaaaccaaacaaccactgac 7271989  T
Q  127 aagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
    |||||||||||||||||  | ||||||||||||||||| ||||||    
T  7271990 aagcatccaacgacacataaagaaacccaccaacgtccaaaccaa 7272034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 6030391 - 6030249
Alignment:
Q  26 ccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctgg 125  Q
    ||||||||||||||||| ||| |||||||||| ||||||  | ||||||||||||| |||||||||| |   ||  |||  ||||||| |||| | | |     
T  6030391 ccatcaccacctatgttccgatcaaacataacatccaccgcaaccaagagagaaaacgaatcaaatagt---agttccaataaaaccaaacaaccaccga 6030295  T
Q  126 caagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
     |||||||||||||||||||||||||||||||||||||||||||||    
T  6030294 gaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 6030249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 18697047 - 18697181
Alignment:
Q  22 tgatccatcaccacctatgttgcgagcaaacataacctccac--catagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaat 119  Q
    |||||||||||||||||||||||| |||||||||||||||||  || | |||| | | ||||  ||||||||| ||||||| |||||||||||| ||||     
T  18697047 tgatccatcaccacctatgttgcgggcaaacataacctccaccacacaaccaatataaaaaacaaatcaaatagtctgagacccacgaaaaccaaacaac 18697146  T
Q  120 cgctggcaagcatccaacgacacaccacgaaaccc 154  Q
    | | | |||  ||||||||||||||||||||||||    
T  18697147 caccgacaattatccaacgacacaccacgaaaccc 18697181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 26656827 - 26656969
Alignment:
Q  26 ccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctgg 125  Q
    |||||||||| ||| ||||||||||||||||||| ||| | | ||||||||||||| |||||||||| |   ||  |||  |||| || ||||   | |     
T  26656827 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccga 26656923  T
Q  126 caagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
    |||||||||||||||||| || | |||||||||| |||||||||||    
T  26656924 caagcatccaacgacacatcaaggaacccaccaatgtcccaaccaa 26656969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 26928414 - 26928556
Alignment:
Q  26 ccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctgg 125  Q
    |||||||||| ||| ||||||||||||||||||| ||| | | ||||||||||||| |||||||||| |   ||  |||  |||| || ||||   | |     
T  26928414 ccatcaccacttatattgcgagcaaacataaccttcacaacaaccaagagagaaaacgaatcaaatagt---agccccaataaaatcaaacaacaaccga 26928510  T
Q  126 caagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
    |||||||||||||||||| || | |||||||||| |||||||||||    
T  26928511 caagcatccaacgacacatcaaggaacccaccaatgtcccaaccaa 26928556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18697003 - 18697038
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  18697003 gttcataagcgaacctagatatgatccatcaccacc 18697038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 7767056 - 7767022
Alignment:
Q  2 ttcataagcgaacctagatatgatccatcaccacc 36  Q
    |||||||| ||||||||||||||||||||||||||    
T  7767056 ttcataagtgaacctagatatgatccatcaccacc 7767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 23054242 - 23054093
Alignment:
Q  22 tgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||| ||| ||| |||||||||||| |||| |     
T  23054242 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtctcagacccacgaaaaccaaacaacca 23054143  T
Q  122 ctggcaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
    ||| |||||||||| | |||| |||| ||||||||||||||| |||||||    
T  23054142 ctgacaagcatccagcaacacgccacaaaacccaccaacgtctcaaccaa 23054093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 53202387 - 53202521
Alignment:
Q  29 tcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctggcaa 128  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||| | ||||| |||||||||||| |||| | | | |||    
T  53202387 tcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatcaaatagtttgagacccacgaaaaccaaacaaccacagacaa 53202486  T
Q  129 gcatccaacgacacaccacgaaacccaccaacgtc 163  Q
    ||||||||||||||||||| |||||||||||||||    
T  53202487 gcatccaacgacacaccacaaaacccaccaacgtc 53202521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 47518459 - 47518318
Alignment:
Q  22 tgatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |  ||||||||||  ||||||||| ||||||| ||| |||||||| |||| |     
T  47518459 tgatccatcaccacctatgttgcgagcaaacataacctccaccacaacatagagagaaaacaaatcaaatagtctgagacccatgaaaaccaaacaacca 47518360  T
Q  122 ctggcaagcatccaacgacacaccacgaaacccaccaacgtc 163  Q
    | | |||||||||||||||||||||| ||| | |||||||||    
T  47518359 ccgacaagcatccaacgacacaccacaaaatctaccaacgtc 47518318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 6410106 - 6410171
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctcca-ccatagccaagagagaaaatgaatc 87  Q
    ||||||||||||||||| |||||||||||||||||||||| |||   |||||||||||| ||||||    
T  6410106 gatccatcaccacctattttgcgagcaaacataacctccatccaccaccaagagagaaattgaatc 6410171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 24957609 - 24957572
Alignment:
Q  27 catcaccacctatgttgcgagcaaacataacctccacc 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24957609 catcaccacctatgttgcgagcaaacataacctccacc 24957572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47518503 - 47518468
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47518503 gttcataagcgaacctagatatgattcatcaccacc 47518468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 3302690 - 3302838
Alignment:
Q  23 gatccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgc 122  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||| |||||||||||| |||| | |    
T  3302690 gatctatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagaggaaatgaatcaaatagtctgagatccacgaaaaccaaacaaccac 3302789  T
Q  123 tggcaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
        |||||||||| |||||||||||||||||| ||||||| |||||||    
T  3302790 cactaagcatccaatgacacaccacgaaacccagcaacgtcacaaccaa 3302838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 10408942 - 10409088
Alignment:
Q  25 tccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctg 124  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||  ||||||||| | ||||| |||| ||||||| | || | |      
T  10408942 tccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagagaaaaaatcaaatagtttgagacccacaaaaaccaaataaccacca 10409041  T
Q  125 gcaagcatccaacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
     |||||||||||||||||||||| ||||||||||| ||| |||||||    
T  10409042 acaagcatccaacgacacaccacaaaacccaccaatgtctcaaccaa 10409088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 5994757 - 5994893
Alignment:
Q  36 ctatgttgcgagcaaacataacctcca-ccatagccaagagagaaaatgaatcaaataatctgagagccacgaaaaccacacaatcgctggcaagcatcc 134  Q
    |||||||||||||||||||||| |||| ||| | |||||||||||||  ||||||| | | ||||  |||||||||||| |||||| | ||||| |||||    
T  5994757 ctatgttgcgagcaaacataacatccatccacaaccaagagagaaaacaaatcaaacagtttgaggcccacgaaaaccaaacaatcaccggcaaccatcc 5994856  T
Q  135 aacgacacaccacgaaacccaccaacgtcccaaccaa 171  Q
    ||| |||||||||| |  |||||||||||||||||||    
T  5994857 aacaacacaccacgtacaccaccaacgtcccaaccaa 5994893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 6444151 - 6444208
Alignment:
Q  24 atccatcaccacctatgttgcgagcaaacataacctcca-ccatagccaagagagaaa 80  Q
    |||||| |||||||| ||||||||||||||||||||||| ||| | ||||||||||||    
T  6444151 atccataaccacctaagttgcgagcaaacataacctccatccacaaccaagagagaaa 6444208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 10408897 - 10408930
Alignment:
Q  3 tcataagcgaacctagatatgatccatcaccacc 36  Q
    ||||||||||||||||||||||||||||||||||    
T  10408897 tcataagcgaacctagatatgatccatcaccacc 10408930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5994700 - 5994735
Alignment:
Q  1 gttcataagcgaacctagatatgatccatcaccacc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  5994700 gttcataagcgaacccagatatgatccatcaccacc 5994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 18269766 - 18269711
Alignment:
Q  26 ccatcaccacctatgttgcgagcaaacataacctccaccatagccaagagagaaaa 81  Q
    ||||||||||||||||| ||| || |||||||||||| ||||  ||||||||||||    
T  18269766 ccatcaccacctatgtttcgatcagacataacctccatcataatcaagagagaaaa 18269711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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