View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17198_low_9 (Length: 534)
Name: NF17198_low_9
Description: NF17198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17198_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 6445736 - 6445369
Alignment:
| Q |
16 |
atagaaaagagtgatgcgatggatgtaataaattaataatgtgatnnnnnnnntgaaatgttgaatagatatagataattattggaggtacatatatcat |
115 |
Q |
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| T |
6445736 |
atagaaaagagtgatgcgatagatgtaataaattaataatgtgataaagaaaatgaaatgttgaatagatatagataattattggaggtacatatatcat |
6445637 |
T |
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| Q |
116 |
tgttgatttattttannnnnnnnattgagttcgattaacattgtgacttgccaagattcccaagaacatgtttgcatttgccattatctattgcaaataa |
215 |
Q |
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| T |
6445636 |
tgttgatttattttattttt---attgagttcgattaacattgtgacttgccaagatacccaagaacatgtttgcatttgccattatctattgcaaataa |
6445540 |
T |
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| Q |
216 |
tacctttctggttcacagatccttagaaattcaacggaactaaatcatcatggtctgactaactcacctactgctgctgacatccatgattgaatgcata |
315 |
Q |
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| T |
6445539 |
tacccttctaggtcacagatccttagaaattcaacggaactaaatcatcatggtctgactaactcacctactgctgctgacatccatgattgaatgcata |
6445440 |
T |
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| Q |
316 |
tcatctctcaaatctatatcacannnnnnnattcagggtaaataattccatttcctcattaatctttttaaa |
387 |
Q |
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| T |
6445439 |
tcatctctcaaatctatatcacattttttt-ttcagggtaattaattcaatttcctcattaatctttttaaa |
6445369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 417 - 516
Target Start/End: Complemental strand, 6445375 - 6445276
Alignment:
| Q |
417 |
ttttaaataagtaacccttctatatatatttgtattgaatgacagttgaatatgaatggaacaattttctgtcacacaaccaaccgtttattgaaataca |
516 |
Q |
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| T |
6445375 |
ttttaaataagtaacccttctatatatatttgtattgaatgacagttgaatatgaatggaacaattttctgccacacaaccaaccgtttattgaaataca |
6445276 |
T |
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