View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_high_1 (Length: 668)

Name: NF17199_high_1
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_high_1
NF17199_high_1
[»] chr2 (19 HSPs)
chr2 (214-656)||(8920119-8920559)
chr2 (214-279)||(36547225-36547290)
chr2 (226-274)||(231595-231643)
chr2 (227-279)||(8788297-8788349)
chr2 (227-279)||(35451246-35451298)
chr2 (230-274)||(40967377-40967421)
chr2 (214-262)||(42200710-42200758)
chr2 (214-279)||(10156023-10156088)
chr2 (227-280)||(22441182-22441235)
chr2 (230-279)||(22523018-22523067)
chr2 (214-279)||(24393251-24393316)
chr2 (242-279)||(27244663-27244700)
chr2 (227-264)||(40096852-40096889)
chr2 (214-263)||(40797386-40797435)
chr2 (227-279)||(8775276-8775328)
chr2 (230-274)||(9547415-9547459)
chr2 (242-274)||(11953957-11953989)
chr2 (226-282)||(28163930-28163986)
chr2 (216-279)||(34242828-34242892)
[»] chr7 (18 HSPs)
chr7 (12-200)||(27552310-27552498)
chr7 (214-279)||(35142139-35142204)
chr7 (221-274)||(44106639-44106692)
chr7 (214-274)||(28200375-28200435)
chr7 (242-280)||(3672570-3672608)
chr7 (242-280)||(16577878-16577916)
chr7 (242-280)||(16587746-16587784)
chr7 (242-280)||(35222929-35222967)
chr7 (222-279)||(5833048-5833105)
chr7 (214-279)||(7249037-7249102)
chr7 (226-263)||(25017803-25017840)
chr7 (231-280)||(34773236-34773285)
chr7 (230-282)||(27158893-27158945)
chr7 (223-263)||(35763727-35763767)
chr7 (234-266)||(40677199-40677231)
chr7 (242-274)||(42829252-42829284)
chr7 (230-274)||(46856092-46856136)
chr7 (226-274)||(47442498-47442546)
[»] chr3 (27 HSPs)
chr3 (214-279)||(33404234-33404299)
chr3 (214-279)||(5117214-5117279)
chr3 (214-279)||(17755127-17755192)
chr3 (214-279)||(19056447-19056512)
chr3 (242-274)||(1111859-1111891)
chr3 (214-274)||(10440695-10440755)
chr3 (227-279)||(30200832-30200884)
chr3 (214-274)||(47039438-47039498)
chr3 (222-272)||(8139728-8139778)
chr3 (234-272)||(23629780-23629818)
chr3 (221-279)||(35492799-35492857)
chr3 (214-280)||(37920988-37921054)
chr3 (246-280)||(48209233-48209267)
chr3 (230-272)||(52453263-52453305)
chr3 (238-279)||(759608-759649)
chr3 (230-279)||(20400083-20400132)
chr3 (242-279)||(27185483-27185520)
chr3 (227-280)||(54230102-54230155)
chr3 (230-279)||(55126012-55126061)
chr3 (230-274)||(1456546-1456590)
chr3 (214-274)||(7829907-7829967)
chr3 (242-274)||(12976620-12976652)
chr3 (222-274)||(22462323-22462374)
chr3 (230-274)||(29791787-29791831)
chr3 (231-263)||(36692177-36692209)
chr3 (227-279)||(45096032-45096084)
chr3 (214-274)||(48022304-48022364)
[»] chr1 (18 HSPs)
chr1 (216-274)||(28455345-28455403)
chr1 (214-274)||(1408446-1408506)
chr1 (214-264)||(34899616-34899666)
chr1 (230-280)||(41974766-41974816)
chr1 (230-279)||(30279626-30279675)
chr1 (230-274)||(32209844-32209888)
chr1 (242-280)||(47070853-47070891)
chr1 (242-279)||(12213999-12214036)
chr1 (214-263)||(14644511-14644560)
chr1 (215-280)||(32874380-32874445)
chr1 (226-279)||(34808565-34808618)
chr1 (227-279)||(14520950-14521002)
chr1 (242-274)||(16033468-16033500)
chr1 (227-279)||(19262910-19262962)
chr1 (215-255)||(23460506-23460546)
chr1 (214-274)||(24571615-24571675)
chr1 (227-263)||(37705147-37705183)
chr1 (230-274)||(40535192-40535236)
[»] chr6 (10 HSPs)
chr6 (230-279)||(29069489-29069538)
chr6 (216-279)||(28046170-28046233)
chr6 (242-279)||(21847200-21847237)
chr6 (214-255)||(31638768-31638809)
chr6 (243-279)||(5655326-5655362)
chr6 (242-274)||(8916492-8916524)
chr6 (214-274)||(12232172-12232232)
chr6 (222-274)||(14049882-14049934)
chr6 (242-274)||(28231443-28231475)
chr6 (214-274)||(30613187-30613247)
[»] chr5 (12 HSPs)
chr5 (214-279)||(31308633-31308698)
chr5 (216-280)||(11017181-11017245)
chr5 (227-281)||(2705519-2705573)
chr5 (238-280)||(17861984-17862026)
chr5 (230-280)||(33899849-33899899)
chr5 (214-279)||(20114711-20114776)
chr5 (217-274)||(35773043-35773100)
chr5 (226-274)||(11647208-11647256)
chr5 (214-274)||(23118041-23118101)
chr5 (214-262)||(35109423-35109471)
chr5 (215-255)||(35807732-35807772)
chr5 (230-274)||(40445994-40446038)
[»] chr4 (18 HSPs)
chr4 (242-279)||(43702347-43702384)
chr4 (227-283)||(29808271-29808327)
chr4 (214-274)||(30380541-30380601)
chr4 (214-274)||(46434750-46434810)
chr4 (227-274)||(19124625-19124672)
chr4 (226-280)||(21052559-21052613)
chr4 (221-262)||(6520094-6520135)
chr4 (214-279)||(38416063-38416128)
chr4 (241-274)||(40847084-40847117)
chr4 (242-274)||(7371566-7371598)
chr4 (214-274)||(19997354-19997414)
chr4 (227-279)||(20403171-20403223)
chr4 (231-279)||(21623426-21623474)
chr4 (227-279)||(35021470-35021522)
chr4 (230-274)||(39842018-39842062)
chr4 (242-274)||(47007320-47007352)
chr4 (215-283)||(48251899-48251967)
chr4 (214-274)||(51298686-51298746)
[»] scaffold0086 (1 HSPs)
scaffold0086 (227-279)||(1613-1665)
[»] chr8 (11 HSPs)
chr8 (214-274)||(7948386-7948446)
chr8 (226-279)||(2554214-2554267)
chr8 (242-279)||(11771713-11771750)
chr8 (242-274)||(6394775-6394807)
chr8 (227-263)||(7627523-7627559)
chr8 (230-274)||(13449803-13449847)
chr8 (230-274)||(26991763-26991807)
chr8 (242-274)||(29546904-29546936)
chr8 (239-279)||(32223894-32223934)
chr8 (214-274)||(33996080-33996140)
chr8 (214-262)||(37872207-37872255)
[»] scaffold0066 (1 HSPs)
scaffold0066 (214-280)||(17509-17575)
[»] scaffold0045 (2 HSPs)
scaffold0045 (230-280)||(63867-63917)
scaffold0045 (230-280)||(71199-71249)
[»] scaffold0053 (1 HSPs)
scaffold0053 (225-274)||(14211-14260)
[»] scaffold0016 (1 HSPs)
scaffold0016 (221-274)||(99048-99101)
[»] scaffold0007 (1 HSPs)
scaffold0007 (239-280)||(221028-221069)
[»] scaffold0038 (1 HSPs)
scaffold0038 (242-274)||(31940-31972)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 214 - 656
Target Start/End: Complemental strand, 8920559 - 8920119
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaattcgctagaacgcgattgtttattaagtggaaa 313  Q
    |||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||| || |||||||||||||| | ||||| ||    
T  8920559 gtggtgtttggaattcgaacctcaaaccttgcatatattatgtactgtccctaccaactgacctaagttcg-taaaacgcgattgtttaattagtgggaa 8920461  T
Q  314 gtgaatatatgattaattgatcgactattatttcagagagnnnnnnnngattcatgactaggataaagtagttagaaagaatataacgtgtagctaggtg 413  Q
    ||||||||||||||||||||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920460 gtgaatatatgattaattgatcgactactatttcagagagaaaaaaa-gattcatgactaggataaagtagttagaaagaatataacgtgtagctaggtg 8920362  T
Q  414 ggtcatttcgtgtaaaaatgaattagactaaaactgatcacatcacaaatcaattcccatccaagctttagattgaattgactatcatagtattccccac 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  8920361 ggtcatttcgtgtaaaaatgaattagactaaaactgatcacatcacaaatcaattcccgtccaagctttagattgaattgactatcatagtattccacac 8920262  T
Q  514 attcttatgataagatttaacttgattttattctattctctatccatggtttgaagaggagaatgcctttctaaatgtgaactgcttgtgaatccagaag 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8920261 attcttatgataagatttaacttgattttattctattctctatccatggtttgaagaggagaatgcctttctaaatgtgaactgcttgtgaatccagaag 8920162  T
Q  614 agtctttcaaaatgactaggctgtgttggtctatcactatatt 656  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  8920161 agtctttgaaaatgactaggctatgttggtctatcactatatt 8920119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 36547225 - 36547290
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||| ||| || ||||||| ||||    
T  36547225 gtggtgtgcggaattcgaacctcaaactttgcatatattatacattatccttaccaactgagctaa 36547290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 231595 - 231643
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||    
T  231595 attcgaacctcaaaccttgcatatattatgtattgtccataccaactga 231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 8788297 - 8788349
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||| |||  || ||||||||||||||||| |||||||||||||||||    
T  8788297 ttcgaaccttaaatcttacatatattatgtattgttcctatcaactgacctaa 8788349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 35451246 - 35451298
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| || ||||||||||||||||||||||||| ||| ||||||| ||||    
T  35451246 ttcgaacttctaactttgcatatattatgtattgtctctaccaactgagctaa 35451298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 40967377 - 40967421
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||||    
T  40967377 gaacctcaaaccttgcatatattatgcattgtccttatcaactga 40967421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 42200758 - 42200710
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtc 262  Q
    ||||||| |||||||||||| ||| || |||||||||||||||||||||    
T  42200758 gtggtgtccggaattcgaacatcagaccttgcatatattatgtattgtc 42200710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 10156088 - 10156023
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| |||| ||||||||  | ||| |||||||||||||||||||||| || ||||||| ||||    
T  10156088 gtggtggtcgggattcgaacaccgaaccttgcatatattatgtattgtccttaccaactgagctaa 10156023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 22441235 - 22441182
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||| |||||| || ||||||| ||||||||||| |||||||||| |||||    
T  22441235 ttcgaacttcaaacattacatatatgatgtattgtccttatcaactgagctaaa 22441182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 22523018 - 22523067
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| ||| |||||||||||||||||||||| || ||||||| ||||    
T  22523018 gaacctcgaaccttgcatatattatgtattgtccataccaactgagctaa 22523067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 24393316 - 24393251
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| |||  ||||||||||| || |||||||||||||| ||||||| || ||||||| ||||    
T  24393316 gtggtgtccggggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaa 24393251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 27244700 - 27244663
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  27244700 ttgcatatattatgcattgtccctatcaactgagctaa 27244663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 40096889 - 40096852
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccc 264  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  40096889 ttcgaacctcagactttgcatatattatgcattgtccc 40096852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 40797435 - 40797386
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtcc 263  Q
    |||||||||||||||||||||| | || ||| |||||||||| |||||||    
T  40797435 gtggtgttcggaattcgaaccttagaccttgtatatattatgcattgtcc 40797386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 8775328 - 8775276
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||| |||  || ||||||||||||||| | |||||||||||||||||    
T  8775328 ttcgaaccttaaatcttacatatattatgtattattcctatcaactgacctaa 8775276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 9547415 - 9547459
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||| ||||| |||||||||||||| ||||||| ||||||||||    
T  9547415 gaaccccaaaccttgcatatattatgcattgtccatatcaactga 9547459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 11953989 - 11953957
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||||||||||||||| |||||||    
T  11953989 ttgcatatattatgtattgtccctaccaactga 11953957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 28163986 - 28163930
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaatt 282  Q
    |||||||||||| ||  ||||| ||||||| ||||||| |||||||||| |||||||    
T  28163986 attcgaacctcagaccgtgcatgtattatgcattgtccttatcaactgagctaaatt 28163930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 279
Target Start/End: Complemental strand, 34242892 - 34242828
Alignment:
Q  216 ggtgttcggaattcgaacctcaaactttgcata-tattatgtattgtccctatcaactgacctaa 279  Q
    |||| ||| |||| ||||| ||||||||||||| ||||||| |||||||||||||| ||| ||||    
T  34242892 ggtggtcgaaatttgaaccccaaactttgcataatattatgcattgtccctatcaattgagctaa 34242828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 2e-85; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 27552310 - 27552498
Alignment:
Q  12 tgaacttgaatttttaaagtgcggttttaaatttaagttttgttgatggaaaaaatggttgaaaaaagacacaatataaagtaaggttttgagtttgagc 111  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27552310 tgaactcgaatttttaaagtacggttttaaatttaagttttgttgatggaaaaaatggttgaaaatagacacaatataaagtaaggttttgagtttgagc 27552409  T
Q  112 tttgttaatggaagaaatatagttgaaaagaaaaaatcatgatcaatcaaatttttcaatgaaaataagacatgtgtaaagtcaatgaa 200  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  27552410 tttgttaattgaagaaatacagttgaaaagaaaaaatcatgatcaatcaaatttttcaatgaaaattagtcatgtgtaaagtcaatgaa 27552498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 35142139 - 35142204
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| ||||  ||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  35142139 gtggtggtcggggttcgaacctcaaactttgcatatattatgcattgtccatatcaactgagctaa 35142204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 44106692 - 44106639
Alignment:
Q  221 tcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||| ||||||||||  |||||||||||||||||||||||| |||||||||||    
T  44106692 tcggagttcgaacctcggactttgcatatattatgtattgtctctatcaactga 44106639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 28200375 - 28200435
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||| || ||||||| || ||||||||||||||||||||| |||| |||||||    
T  28200375 gtggtggtcggagtttgaacctcgaattttgcatatattatgtattgttcctaccaactga 28200435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 3672570 - 3672608
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  3672570 ttgcatatattatgtattgtccatatcaactgagctaaa 3672608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Original strand, 16577878 - 16577916
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  16577878 ttgcatatattatgtattgtccctaccaactgagctaaa 16577916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 16587784 - 16587746
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  16587784 ttgcatatattatgtattgtccctaccaactgagctaaa 16587746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 35222967 - 35222929
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  35222967 ttgcatatatcatgcattgtccctatcaactgacctaaa 35222929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 5833105 - 5833048
Alignment:
Q  222 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||||| ||||  |||||||||||||| ||| |||||| ||||||| ||||    
T  5833105 cggaattcgaaccacaaatattgcatatattatgcattatccctaccaactgagctaa 5833048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 7249037 - 7249102
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| | |||||||||||  | || ||||||||||||||||||||||| || ||||||| ||||    
T  7249037 gtggtggttggaattcgaacaccgaattttgcatatattatgtattgtccttaccaactgatctaa 7249102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 25017803 - 25017840
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtcc 263  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  25017803 attcgaacctccaactttacatatattatgtattgtcc 25017840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 34773285 - 34773236
Alignment:
Q  231 aacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||| || |||||||||||||| |||||||||| ||||||| |||||    
T  34773285 aacctcataccttgcatatattatgcattgtccctaccaactgaactaaa 34773236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 27158893 - 27158945
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaatt 282  Q
    |||||||||||||||||||||||||  ||||| | || ||||||| |||||||    
T  27158893 gaacctcaaactttgcatatattattcattgttcttaccaactgagctaaatt 27158945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 223 - 263
Target Start/End: Complemental strand, 35763767 - 35763727
Alignment:
Q  223 ggaattcgaacctcaaactttgcatatattatgtattgtcc 263  Q
    |||||||||| |||| ||||||||||||||||| |||||||    
T  35763767 ggaattcgaatctcatactttgcatatattatgcattgtcc 35763727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 40677231 - 40677199
Alignment:
Q  234 ctcaaactttgcatatattatgtattgtcccta 266  Q
    ||||||||||| |||||||||||||||||||||    
T  40677231 ctcaaactttgtatatattatgtattgtcccta 40677199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 42829252 - 42829284
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||| ||||||||||||||||||    
T  42829252 ttgcatatattatgcattgtccctatcaactga 42829284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 46856136 - 46856092
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| ||||||| |||||||||||||| | ||||||||||||    
T  46856136 gaacctcgaactttgtatatattatgtattattcctatcaactga 46856092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 47442546 - 47442498
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| | ||||| |||||||||||||||||||||| || |||||||    
T  47442546 attcgaatcccaaaccttgcatatattatgtattgtccttaccaactga 47442498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 33404299 - 33404234
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| |||||||| |||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  33404299 gtggtgatcggaatttgaacctcaaactttacatatattatgtattgtccatatcaactgagctaa 33404234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 5117279 - 5117214
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| | ||| |||||||||||||| || ||||||||||||||||||| |||||||||| ||||    
T  5117279 gtggtggttggacttcgaacctcaaaccttacatatattatgtattgtccttatcaactgagctaa 5117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 17755192 - 17755127
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| |||||||| ||||| | ||| || ||||||||||||||||| |||||||||||| ||||    
T  17755192 gtggtggtcggaatttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaa 17755127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 19056512 - 19056447
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| |||||||| ||||| | ||| || ||||||||||||||||| |||||||||||| ||||    
T  19056512 gtggtggtcggaatttgaaccccgaaccttacatatattatgtattgttcctatcaactgagctaa 19056447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 1111859 - 1111891
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||||||||||||||||||||||    
T  1111859 ttgcatatattatgtattgtccctatcaactga 1111891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 10440755 - 10440695
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||||||||||||||  || |||||||||||||| |||||| ||| |||||||    
T  10440755 gtggtggtcggaattcgaacctcgtaccttgcatatattatgcattgtctctaccaactga 10440695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 30200884 - 30200832
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||||||||| |||||||||||||| ||||||| || ||||||| ||||    
T  30200884 ttcgaacctcaaaccttgcatatattatgcattgtccttagcaactgagctaa 30200832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 47039498 - 47039438
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| |||| ||||||||| | |||||||||||||||||| ||||||| ||||| ||||    
T  47039498 gtggtggtcgggattcgaaccccgaactttgcatatattatgcattgtccttatcatctga 47039438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 8139778 - 8139728
Alignment:
Q  222 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaact 272  Q
    |||||||||||||||| || |||||||||||||| ||||||| || |||||    
T  8139778 cggaattcgaacctcagaccttgcatatattatgcattgtccataccaact 8139728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 23629818 - 23629780
Alignment:
Q  234 ctcaaactttgcatatattatgtattgtccctatcaact 272  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  23629818 ctcaaaccttgcatatattatatattgtccctatcaact 23629780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 279
Target Start/End: Complemental strand, 35492857 - 35492799
Alignment:
Q  221 tcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||| ||||||||||| |||||||||||||||||| ||||| | || ||||||| ||||    
T  35492857 tcgggattcgaacctcgaactttgcatatattatgcattgttcttaccaactgagctaa 35492799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 37920988 - 37921054
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||| ||| ||| ||||| || || |||||||||||||| ||| |||||||||||||| |||||    
T  37920988 gtggtgtccgggatttgaaccgcagacattgcatatattatgcattatccctatcaactgagctaaa 37921054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 280
Target Start/End: Original strand, 48209233 - 48209267
Alignment:
Q  246 atatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||||||||||||||||||||| |||||    
T  48209233 atatattatgtattgtccctatcaactgagctaaa 48209267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 52453263 - 52453305
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaact 272  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||    
T  52453263 gaacctcgaactttgcatatattatgcattgtccctattaact 52453305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 759608 - 759649
Alignment:
Q  238 aactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||||||||||||| |||||||||| ||||||| ||||    
T  759608 aactttgcatatattatgcattgtccctaccaactgaactaa 759649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 20400132 - 20400083
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||| || ||||||||||||||||||||| || |||||||| ||||    
T  20400132 gaacctcagaccttgcatatattatgtattgtctctgtcaactgagctaa 20400083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 27185520 - 27185483
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  27185520 ttgcatatattatgtattgtccctaccaactgagctaa 27185483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 54230102 - 54230155
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    |||||||| ||||| |||||||||||||| ||||||| || ||||||| |||||    
T  54230102 ttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagctaaa 54230155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 55126061 - 55126012
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| ||| ||||||||||||||||||||||  ||||||||| ||||    
T  55126061 gaacctcgaaccttgcatatattatgtattgtcctcatcaactgagctaa 55126012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 1456546 - 1456590
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||| || |||||||||||||  ||||||||||||||||||    
T  1456546 gaacctcagaccttgcatatattatacattgtccctatcaactga 1456590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 7829967 - 7829907
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||| ||||||| ||| || || ||||||||||| ||||||| ||||||||||    
T  7829967 gtggtggtcggatttcgaacttcagaccttacatatattatgcattgtccatatcaactga 7829907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 12976620 - 12976652
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||| ||||||||||||||||||    
T  12976620 ttgcatatattatgcattgtccctatcaactga 12976652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 274
Target Start/End: Complemental strand, 22462374 - 22462323
Alignment:
Q  222 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||| ||||| || ||||||||||| ||||||| ||||||||||    
T  22462374 cggaattcgaacc-caaacattacatatattatgcattgtccttatcaactga 22462323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 29791831 - 29791787
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||| || |||||||||||||||||  |||||||||||    
T  29791831 gaacctcaaaccttacatatattatgtattgtttctatcaactga 29791787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 36692177 - 36692209
Alignment:
Q  231 aacctcaaactttgcatatattatgtattgtcc 263  Q
    |||||||||| ||||||||||||||||||||||    
T  36692177 aacctcaaaccttgcatatattatgtattgtcc 36692209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 45096084 - 45096032
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||| || || |||||||||||||| ||||||| |||||||||| ||||    
T  45096084 ttcgaaccacagaccttgcatatattatgcattgtccttatcaactgagctaa 45096032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 48022304 - 48022364
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||| || ||||| | |||||||||||||||||| |||||| ||| |||||||    
T  48022304 gtggtggtcggagtttgaaccccgaactttgcatatattatgcattgtctctaccaactga 48022364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 28455345 - 28455403
Alignment:
Q  216 ggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||| |||||||||||||| |||||||||||||||||||| |||||| ||| |||||||    
T  28455345 ggtggtcggaattcgaaccccaaactttgcatatattatgcattgtctctaccaactga 28455403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 1408506 - 1408446
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| |||||||||||| || |||||||||||||||||| ||||||| || |||||||    
T  1408506 gtggtgtccggaattcgaacttcgaactttgcatatattatgcattgtccttaccaactga 1408446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 34899616 - 34899666
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccc 264  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||||||||    
T  34899616 gtggtggtcggagtttgaaccccaaactttgcatatattatgtattgtccc 34899666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 41974816 - 41974766
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||| |||||    
T  41974816 gaacctcaaaccttgcatatattatgcattatccctatcaactgaactaaa 41974766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 30279626 - 30279675
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| ||| |||||||||||||||||||| |||||||||||| ||||    
T  30279626 gaacctccaacattgcatatattatgtattgtacctatcaactgagctaa 30279675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 32209844 - 32209888
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||||    
T  32209844 gaacctcgaacgttgcatatattatgtattgttcctatcaactga 32209888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 47070891 - 47070853
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  47070891 ttgcatatattatgtattgttcctatcaactgaactaaa 47070853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 12214036 - 12213999
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  12214036 ttgcatatattatgtattgttcctatcaactgagctaa 12213999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 14644511 - 14644560
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtcc 263  Q
    ||||| ||||| |||| ||||||| ||||||||||||||||| |||||||    
T  14644511 gtggtattcgggattcaaacctcagactttgcatatattatgcattgtcc 14644560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 32874380 - 32874445
Alignment:
Q  215 tggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||| |||||||||||||| | |||||| ||||||||||| |||| || || ||||||| |||||    
T  32874380 tggtggtcggaattcgaaccccgaactttacatatattatgcattgcccttaccaactgagctaaa 32874445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 34808565 - 34808618
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||| ||| |||||||||||||| ||||||| || ||||||| ||||    
T  34808565 attcgaacctcgaaccttgcatatattatgcattgtccttaacaactgagctaa 34808618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 14521002 - 14520950
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||| |||||||||||||| ||||| ||||||| || ||||||| ||||    
T  14521002 ttcgaaccccaaactttgcatattttatgcattgtccataccaactgagctaa 14520950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 16033468 - 16033500
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||| ||||||||||||||||||    
T  16033468 ttgcatatattatgcattgtccctatcaactga 16033500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 19262910 - 19262962
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||| | |||||||||||| ||||| ||||||| |||||||||| ||||    
T  19262910 ttcgaaccccgaactttgcatatgttatgcattgtccttatcaactgagctaa 19262962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 23460546 - 23460506
Alignment:
Q  215 tggtgttcggaattcgaacctcaaactttgcatatattatg 255  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  23460546 tggtggtcggaattcgaacctcaaaccttgcatattttatg 23460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 24571615 - 24571675
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||| || ||||| || || |||||||||||||||||||| || |||||||||    
T  24571615 gtggtggtcggagtttgaaccccagaccttgcatatattatgtattgttccaatcaactga 24571675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 37705183 - 37705147
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtcc 263  Q
    |||||||||||||| |||||||||||||| |||||||    
T  37705183 ttcgaacctcaaacattgcatatattatgcattgtcc 37705147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 40535192 - 40535236
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||||||||||||| | ||||| ||||| |||||||    
T  40535192 gaacctcaaactttgcatatattttatattgaccctaccaactga 40535236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 29069538 - 29069489
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||| ||||| ||||||||||| |||||||||||||||||| ||||    
T  29069538 gaacctcagacttttcatatattatgcattgtccctatcaactgagctaa 29069489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 28046170 - 28046233
Alignment:
Q  216 ggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||||  ||| |||||||||| |||||||||||||| ||||||  |||||||||| ||||    
T  28046170 ggtgttcggggttcaaacctcaaaccttgcatatattatgcattgtctttatcaactgaactaa 28046233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 21847237 - 21847200
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  21847237 ttgcatatattatgtattgtccctaccaactgagctaa 21847200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Complemental strand, 31638809 - 31638768
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatg 255  Q
    |||||||||| ||||||||| ||| |||||||||||||||||    
T  31638809 gtggtgttcgaaattcgaacatcagactttgcatatattatg 31638768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 5655326 - 5655362
Alignment:
Q  243 tgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  5655326 tgcatatattatgtattgtccctaccaactgagctaa 5655362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 8916492 - 8916524
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||||||||||||||| |||||||    
T  8916492 ttgcatatattatgtattgtccctaccaactga 8916524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 12232172 - 12232232
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||  |||||||| || ||  ||||||||||||| ||||||||||||||||||    
T  12232172 gtggtggtcggggttcgaaccccagacactgcatatattatgcattgtccctatcaactga 12232232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 14049882 - 14049934
Alignment:
Q  222 cggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| |||||||| || |||||||||||||| |||||| | |||||||||    
T  14049882 cggaatttgaacctcagaccttgcatatattatgcattgtctcaatcaactga 14049934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 28231443 - 28231475
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||| ||||||||||||||||||    
T  28231443 ttgcatatattatgcattgtccctatcaactga 28231475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 30613247 - 30613187
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||| |||||||||||||| ||| ||||| ||| |||||| | || |||||||    
T  30613247 gtggtgttcggagttcgaacctcaaaccttgtatataatatatattgttcttaccaactga 30613187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 31308633 - 31308698
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| |||||||  || ||||||| ||||    
T  31308633 gtggtgtccggaattcgaacctctaaccttgcatatattatatattgtctttaccaactgagctaa 31308698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 11017245 - 11017181
Alignment:
Q  216 ggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||| ||| |||||||||||| || |||||||||||||| ||| |||||| ||||||| |||||    
T  11017245 ggtgtccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaa 11017181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 2705519 - 2705573
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaat 281  Q
    ||||||||||| || || ||||||||||||||||| | |||||||||| ||||||    
T  2705519 ttcgaacctcagaccttacatatattatgtattgttcttatcaactgagctaaat 2705573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 17862026 - 17861984
Alignment:
Q  238 aactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    |||||||||||||||||| |||||||||| ||||||| |||||    
T  17862026 aactttgcatatattatgcattgtccctaccaactgagctaaa 17861984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 33899849 - 33899899
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||| | |||||||||||||||||| |||||||| ||| |||||    
T  33899849 gaacctcaaacatcgcatatattatgtattgttcctatcaattgagctaaa 33899899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 20114776 - 20114711
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||| |||| ||| ||||||||||||||| |||| ||||| ||||||| || ||||||| ||||    
T  20114776 gtggtggtcgggatttgaacctcaaactttgtatattttatgcattgtccttaccaactgagctaa 20114711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 35773043 - 35773100
Alignment:
Q  217 gtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||| ||||||||||| ||||| |||||||| || ||| ||| ||||||||||    
T  35773043 gtgttcggagttcgaacctcacactttacatatattgtgcattatccttatcaactga 35773100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 11647256 - 11647208
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||| ||||| |||||||||||||| ||||||| || |||||||    
T  11647256 attcgaaccccaaaccttgcatatattatgcattgtccttaccaactga 11647208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 23118041 - 23118101
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| | || |||||||| ||||| || ||||||||||| ||||||| ||||||||||    
T  23118041 gtggtgtccagagttcgaaccccaaaccttacatatattatgcattgtccttatcaactga 23118101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 35109471 - 35109423
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtc 262  Q
    ||||||| ||| |||||||||||  || |||||||||||||||||||||    
T  35109471 gtggtgtccgggattcgaacctcggaccttgcatatattatgtattgtc 35109423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 35807732 - 35807772
Alignment:
Q  215 tggtgttcggaattcgaacctcaaactttgcatatattatg 255  Q
    ||||||||||  |||||||||||||| ||||||||||||||    
T  35807732 tggtgttcggggttcgaacctcaaaccttgcatatattatg 35807772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 40446038 - 40445994
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||| || |||||||||||||| ||||||| ||||||||||    
T  40446038 gaacctcagaccttgcatatattatgcattgtccttatcaactga 40445994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 43702347 - 43702384
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43702347 ttgcatatattatgtattgtccctatcaactgagctaa 43702384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 29808271 - 29808327
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaattc 283  Q
    |||||||| || || |||||||||||||| ||||||| |||||||||| ||||||||    
T  29808271 ttcgaaccccataccttgcatatattatgcattgtccttatcaactgatctaaattc 29808327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 30380601 - 30380541
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| |||||||||||||| ||||| |||||||||||||  ||||||| || |||||||    
T  30380601 gtggtggtcggaattcgaaccccaaaccttgcatatattatacattgtccttaccaactga 30380541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 46434750 - 46434810
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||| || ||||||||||| || ||||||||||| ||||||| ||||||||||    
T  46434750 gtggtgatcggagtttgaacctcaaaccttacatatattatgcattgtccttatcaactga 46434810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 19124625 - 19124672
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||||    
T  19124625 ttcgaacctcagaccttgcatatattatgtattgtctttatcaactga 19124672  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 21052559 - 21052613
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    |||||||||||| || |||||||||||||||||| ||| || ||||||| |||||    
T  21052559 attcgaacctcataccttgcatatattatgtattatccataccaactgagctaaa 21052613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 6520135 - 6520094
Alignment:
Q  221 tcggaattcgaacctcaaactttgcatatattatgtattgtc 262  Q
    ||||| |||||||||||||| |||||||||||||| ||||||    
T  6520135 tcggagttcgaacctcaaaccttgcatatattatgcattgtc 6520094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 38416128 - 38416063
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||| || |||||||||||| || |||||||||||||| ||| ||| || ||||||| ||||    
T  38416128 gtggtgtttgggattcgaacctcataccttgcatatattatgcattatccttaccaactgagctaa 38416063  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 274
Target Start/End: Original strand, 40847084 - 40847117
Alignment:
Q  241 tttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||||||||||| |||||||||||    
T  40847084 tttgcatatattatgtattgtctctatcaactga 40847117  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 7371566 - 7371598
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||||||||||| ||||||||||    
T  7371566 ttgcatatattatgtattgtccttatcaactga 7371598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 19997354 - 19997414
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||| || ||||| | |||||||||||||||||| |||||| ||| |||||||    
T  19997354 gtggtggtcggagtttgaaccccgaactttgcatatattatgcattgtctctaccaactga 19997414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 20403171 - 20403223
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| ||| || |||||||||||||| ||||| |||||||||||| ||||    
T  20403171 ttcgaacttcagaccttgcatatattatgcattgttcctatcaactgagctaa 20403223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 21623426 - 21623474
Alignment:
Q  231 aacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||| || |||||||||||||| |||||||||| ||||||| ||||    
T  21623426 aacctcagaccttgcatatattatgcattgtccctaccaactgaactaa 21623474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 35021470 - 35021522
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    |||||||| | ||| |||||||| ||||||||||||| |||||||||| ||||    
T  35021470 ttcgaaccccgaaccttgcatattttatgtattgtccatatcaactgagctaa 35021522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 39842018 - 39842062
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||| || ||||||||||| ||||||| ||||||||||    
T  39842018 gaacctcaaaccttacatatattatgcattgtccttatcaactga 39842062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 47007320 - 47007352
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||||||||||||||| |||||||    
T  47007320 ttgcatatattatgtattgtccctaacaactga 47007352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 48251899 - 48251967
Alignment:
Q  215 tggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaattc 283  Q
    ||||| ||||||||  ||| |||||| |||||||||||||  ||||| | |||||||||| ||||||||    
T  48251899 tggtggtcggaatttaaacttcaaaccttgcatatattatacattgttcatatcaactgagctaaattc 48251967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Original strand, 51298686 - 51298746
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| ||| |||| |||| | ||| ||||||||||||| |||||||| ||||||||||    
T  51298686 gtggtgtccgggattcaaaccccgaaccttgcatatattatatattgtccttatcaactga 51298746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 1665 - 1613
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||| |  ||| ||||||||||||||||||||||||||| ||||||    
T  1665 ttcgaacctcataacttggatatattatgtattgtccctatcaactaacctaa 1613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 7948446 - 7948386
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||| ||||||||| ||| |  ||||||||||||||| |||| |||||||||||    
T  7948446 gtggtgttcgggattcgaaccccaacccctgcatatattatgtaatgtctctatcaactga 7948386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 2554214 - 2554267
Alignment:
Q  226 attcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||| || || |||||||| ||||||||||||| |||||||||| ||||    
T  2554214 attcgaaccccagaccttgcatattttatgtattgtccatatcaactgagctaa 2554267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 11771750 - 11771713
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  11771750 ttgcatatattatgtattgtctctatcaactgagctaa 11771713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 6394775 - 6394807
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||||| |||||||||||||||||    
T  6394775 ttgcatatattatgttttgtccctatcaactga 6394807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 7627559 - 7627523
Alignment:
Q  227 ttcgaacctcaaactttgcatatattatgtattgtcc 263  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  7627559 ttcgaacctcaaaatttgcatttattatgtattgtcc 7627523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 13449803 - 13449847
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||| |||||||||||||||||| || ||||||| |||||||    
T  13449803 gaacctcgaactttgcatatattatgcatggtccctaccaactga 13449847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 26991763 - 26991807
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||| ||||| |||||||||||||| ||||||| ||||||||||    
T  26991763 gaaccacaaaccttgcatatattatgcattgtccatatcaactga 26991807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 29546936 - 29546904
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    ||||||||||||| |||||||||||||||||||    
T  29546936 ttgcatatattatctattgtccctatcaactga 29546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 32223894 - 32223934
Alignment:
Q  239 actttgcatatattatgtattgtccctatcaactgacctaa 279  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  32223894 actttgcatatattatgcattgtctctatcaactgaactaa 32223934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 33996140 - 33996080
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||||| ||||| || ||||| | |||||||||||||||||| |||||| ||| |||||||    
T  33996140 gtggtggtcggagtttgaaccccgaactttgcatatattatgcattgtctctaccaactga 33996080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 37872255 - 37872207
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtc 262  Q
    |||||| ||||| |||||||| ||||| |||||||| ||||||||||||    
T  37872255 gtggtggtcggagttcgaaccccaaaccttgcatattttatgtattgtc 37872207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 17575 - 17509
Alignment:
Q  214 gtggtgttcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||| ||| ||||||||| ||||| |||||||||||||| ||||||| | ||| |||| |||||    
T  17575 gtggtgtccgggattcgaaccccaaaccttgcatatattatgcattgtccatgtcagctgagctaaa 17509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 63917 - 63867
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||||||| |||||||||  |||||||||| ||||||| |||||    
T  63917 gaacctcaaactttgtatatattatacattgtccctaccaactgagctaaa 63867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 71249 - 71199
Alignment:
Q  230 gaacctcaaactttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||||||| |||||||||  |||||||||| ||||||| |||||    
T  71249 gaacctcaaactttgtatatattatacattgtccctaccaactgagctaaa 71199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 14260 - 14211
Alignment:
Q  225 aattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    |||| ||||||||||| || |||||||||||||||||  |||||||||||    
T  14260 aatttgaacctcaaaccttacatatattatgtattgttactatcaactga 14211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 99101 - 99048
Alignment:
Q  221 tcggaattcgaacctcaaactttgcatatattatgtattgtccctatcaactga 274  Q
    ||||| || ||||| || || |||||||||||||| ||||||||||||||||||    
T  99101 tcggagtttgaaccccagaccttgcatatattatgcattgtccctatcaactga 99048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 221028 - 221069
Alignment:
Q  239 actttgcatatattatgtattgtccctatcaactgacctaaa 280  Q
    ||||||||||||||||||||| |||||| ||||||| |||||    
T  221028 actttgcatatattatgtattatccctaccaactgagctaaa 221069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 31940 - 31972
Alignment:
Q  242 ttgcatatattatgtattgtccctatcaactga 274  Q
    |||||||||||||| ||||||||||||||||||    
T  31940 ttgcatatattatgcattgtccctatcaactga 31972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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