View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_high_12 (Length: 420)
Name: NF17199_high_12
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 2592293 - 2591883
Alignment:
| Q |
1 |
gaattaggtgttcccatatgtgatgagtttggtactagtacttgttcttcacctccaatttgtccttcaacactctcccagctgaaaataaagctaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592293 |
gaattaggtgttcccatatgtgatgagtttggtactagtacttgttcttcacctccaatttgtccttcaacactctcccagctgaaaataaagctaggac |
2592194 |
T |
|
| Q |
101 |
attgttgttgagtttccacccattcattcaactcttcttgtctttgcaattgcaatgactccaatgttaataactctcctccttcctcatccatattaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592193 |
attgttgttgagtttccacccattcattcaactcttcttgtctttgcaattgcaatgactccaatgttaataactctcctccttcctcatccatattaca |
2592094 |
T |
|
| Q |
201 |
agattgcacttgatcaattggcaccatgctgttttccacattattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2592093 |
agattgcacttgatcaattggcaccatgctgttttccacattattctctatcaatggtggaagattataattactagtatcatgaattgttgtaaaagct |
2591994 |
T |
|
| Q |
301 |
attgcagctggatgaggaggaagtgtctgaacttgat---------gatgatcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2591993 |
attgcagctggatgaggaggaagtgtctgaacttgatgatgttgatgatgatcatggtgattcaagttccatgtgtcagaactcaaactcacagaatcat |
2591894 |
T |
|
| Q |
392 |
gatggaatagt |
402 |
Q |
| |
|
||||||||||| |
|
|
| T |
2591893 |
gatggaatagt |
2591883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University