View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_high_21 (Length: 343)
Name: NF17199_high_21
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_21 |
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| [»] chr3 (9 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 343
Target Start/End: Original strand, 36810256 - 36810582
Alignment:
| Q |
15 |
gagcttttagaagaggaggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctg |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36810256 |
gagcttttagaagaggtggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctct- |
36810354 |
T |
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| Q |
115 |
ttagaaactttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtcttt |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36810355 |
-tagaatctttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcatgatttgtcttt |
36810453 |
T |
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| Q |
215 |
ttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatggg |
314 |
Q |
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| T |
36810454 |
ttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatggg |
36810553 |
T |
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| Q |
315 |
atctcttatctactgtcaaagtgtcgatt |
343 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36810554 |
atctcttatctactgtcaaagtgtcgatt |
36810582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 98 - 318
Target Start/End: Complemental strand, 36876349 - 36876129
Alignment:
| Q |
98 |
tttgaattctctctctgttagaaactttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaact |
197 |
Q |
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| T |
36876349 |
tttgaaatctttctctgttacaaactttattgaagcaattgaaactaataaaattactccatactttgttgattcattgtggagtttgaagggattaact |
36876250 |
T |
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| Q |
198 |
tgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||| |
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| T |
36876249 |
tgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgacgctcttcctttgaccaaacttgttctccatggttgcttcc |
36876150 |
T |
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| Q |
298 |
attatacatatcatgggatct |
318 |
Q |
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||||||||||| || |||||| |
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| T |
36876149 |
attatacatattataggatct |
36876129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 34 - 266
Target Start/End: Original strand, 27005023 - 27005255
Alignment:
| Q |
34 |
ttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctgttagaaactttacagaagc |
133 |
Q |
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||||||||||||||| |||||||||| || |||||||||| ||||||| | |||||||||||||||||||||| |||||||||| || ||| ||||| |
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| T |
27005023 |
ttatgttcgattgccaattcctaacacatgatggtattgcttctgcaatctaccagagacccactttgaattctttctctgttagtaattttcaggaagc |
27005122 |
T |
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| Q |
134 |
aattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttc |
233 |
Q |
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| T |
27005123 |
aaatggattcaataaaattactccatacttcgttgattcattcgggactttgaagggattaacttgtcttgatttctctttctcacgtatttctgatctc |
27005222 |
T |
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| Q |
234 |
ttgctttgctctctagcacttgaagctcttcct |
266 |
Q |
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| T |
27005223 |
atgctttgctctttagcacttgaatctcttcct |
27005255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 288
Target Start/End: Original strand, 33708295 - 33708528
Alignment:
| Q |
55 |
taacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctgttagaaactttacagaagcaattgaaacgaataaagttac |
154 |
Q |
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|||||| ||||| ||||||| ||||||| ||||||||||| | ||| | |||| | ||||||| |||||| |||||| | |||| | || ||||| |
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| T |
33708295 |
taacacatgctgttattgcttctgcaatctgccagagaccaagtttaagttctttatctgttaccgactttaaagaagctagagaaagagaaaatgttac |
33708394 |
T |
|
| Q |
155 |
tccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcactt |
254 |
Q |
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| | | |||| |||||||||| |||||||||| | |||||||||||||||||||| | |||||||||| |||||| ||||||| ||||||| ||||| |
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| T |
33708395 |
ttcgtgcttcattgattcattgatgagtttgaagcgcttaacttgtcttgatttgtcctattcatgcattactgattcgttgctttactctctaacactt |
33708494 |
T |
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| Q |
255 |
gaagctcttcctttgagggaacttatcctccaag |
288 |
Q |
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| T |
33708495 |
gcagctcttcctttgaggaaacttgtcctccaag |
33708528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 255
Target Start/End: Original strand, 33714131 - 33714361
Alignment:
| Q |
25 |
aagaggaggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctgttagaaactt |
124 |
Q |
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|||||| |||||||| | | |||| || | |||||| ||||||||||||| ||||||| | ||||||||| ||||| | |||| | ||| ||| ||||| |
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| T |
33714131 |
aagaggtggttatgtacaaatgccgttccataacacatgctggtattgcttctgcaatctaccagagaccgactttaagttctttatctcttaccaactt |
33714230 |
T |
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| Q |
125 |
tacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatt |
224 |
Q |
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| T |
33714231 |
taaggaagctagagaaatagaaaatgttactttgtacttcattgattcattggtgagtttaaagcgcttaacttgtcttgatttgtcctattcatgcatt |
33714330 |
T |
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| Q |
225 |
tctgatttcttgctttgctctctagcacttg |
255 |
Q |
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|||||| ||||||| |||||||||||||| |
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| T |
33714331 |
actgattcgttgctttactctctagcacttg |
33714361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 33397226 - 33397108
Alignment:
| Q |
167 |
tgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcct |
266 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||| |||||| ||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
33397226 |
tgattcattgctgagtttgaagagattaacttgtcttgatttgtccttttcactcatcactgacgagctgctttgcttactagcacttgaagctcttcct |
33397127 |
T |
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| Q |
267 |
ttgagggaacttatcctcc |
285 |
Q |
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|||||| ||||| |||||| |
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| T |
33397126 |
ttgaggaaacttgtcctcc |
33397108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 33093169 - 33093496
Alignment:
| Q |
16 |
agcttttagaagaggaggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctctgt |
115 |
Q |
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||||| |||| |||| ||||||||| || || ||||| ||||| | ||||||||||||| ||||||| | ||||||| | |||| |||| ||||||| |
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| T |
33093169 |
agcttctagatgaggtggttatgttagaatgtcctttactaactcatgctggtattgcttctgcaatctatgagagaccaagtttgtcttctttctctgt |
33093268 |
T |
|
| Q |
116 |
tagaaactttacagaagcaattgaaacgaataaagttactccatacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttt |
215 |
Q |
| |
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| | ||||||| ||| ||| |||| || || |||||| |||||||| |||||| |||| ||||||||| ||||| |||||||||||| || |
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| T |
33093269 |
tggcaactttatggaaccaagagaaagcaaaaatgttacttcatacttcattgattcgttggtgagtttgaaacacttaacccatcttgatttgtcactt |
33093368 |
T |
|
| Q |
216 |
tcatgcatttctgatttcttgctttgctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatggga |
315 |
Q |
| |
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||||| || ||||| ||||| |||| ||||| ||||| ||||||||| ||| | ||| |||| |||||||||| | | ||||||||| |||| |
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| T |
33093369 |
tcatgtgttactgatgatatgcttatctctgtagcaaatgaagatcttcctttaaggaaccttgtccttcaagattgctgcgaatatacatatttcggga |
33093468 |
T |
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| Q |
316 |
tctcttatctactgtcaaagtgtcgatt |
343 |
Q |
| |
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|||||||| | ||||||||||| |||| |
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| T |
33093469 |
tctcttatttcttgtcaaagtgtagatt |
33093496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 37580285 - 37580382
Alignment:
| Q |
242 |
ctctctagcacttgaagctcttcctttgagggaacttatcctccaagattgcttcaattatacatatcatgggatctcttatctactgtcaaagtgtc |
339 |
Q |
| |
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|||| |||||||||| ||| |||||||||| ||||| ||||| ||||||||| ||| || |||||| |||||| | |||| || |||||||||||| |
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| T |
37580285 |
ctctttagcacttgaccctcctcctttgaggaaacttgtcctcaaagattgctccaactacacatattctgggatatattatttattgtcaaagtgtc |
37580382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 33397343 - 33397263
Alignment:
| Q |
32 |
ggttatgttcgattgccctttcctaacacgtgctggtattgctactgcaatttgccagagacccactttgaattctctctc |
112 |
Q |
| |
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| T |
33397343 |
ggttatgttccaatgccatttgctatcacatgatggtcttgcttctgcaatatgtcagagaccaactttgaattctttctc |
33397263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 18723716 - 18723904
Alignment:
| Q |
157 |
catacttcgctgattcattggggagtttgaagggattaacttgtcttgatttgtctttttcatgcatttctgatttcttgctttgctctctagcacttga |
256 |
Q |
| |
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|||||||| ||||||||||| |||||||||| | |||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18723716 |
catacttcattgattcattggcgagtttgaagcgcttaacttgtcttgaccagtccttttcatgcattactgatttcttgctttgctctctagcacttga |
18723815 |
T |
|
| Q |
257 |
agctcttcctttgagggaacttatcctccaagattgcttcaattat--acatatcatgggatctcttatctactgtcaaagtgtcgatt |
343 |
Q |
| |
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||||||||||||||| ||||| || |||||||| || || ||| |||||| |||||||||||||| |||||||||||||||| |
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| T |
18723816 |
agctcttcctttgagcaaacttgtctcccaagattactgcacatatacacatataccgggatctcttatctcttgtcaaagtgtcgatt |
18723904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 3438035 - 3438081
Alignment:
| Q |
174 |
ttggggagtttgaagggattaacttgtcttgatttgtctttttcatg |
220 |
Q |
| |
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|||| |||| |||||||||||||||||||||||||||| | |||||| |
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| T |
3438035 |
ttggtgagtctgaagggattaacttgtcttgatttgtcgtcttcatg |
3438081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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