View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_high_22 (Length: 343)

Name: NF17199_high_22
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_high_22
NF17199_high_22
[»] chr4 (11 HSPs)
chr4 (207-343)||(7765834-7765970)
chr4 (230-343)||(7786679-7786792)
chr4 (214-343)||(7877945-7878074)
chr4 (207-336)||(7773565-7773694)
chr4 (206-317)||(7908528-7908639)
chr4 (225-287)||(48898953-48899015)
chr4 (212-295)||(7237518-7237601)
chr4 (224-287)||(7771610-7771673)
chr4 (224-287)||(7790295-7790358)
chr4 (230-275)||(50669300-50669345)
chr4 (231-271)||(37826798-37826838)
[»] chr8 (6 HSPs)
chr8 (239-293)||(4962303-4962357)
chr8 (231-287)||(12195543-12195599)
chr8 (231-287)||(12439971-12440027)
chr8 (231-287)||(12200561-12200617)
chr8 (231-287)||(12444989-12445045)
chr8 (231-292)||(15349102-15349163)
[»] chr6 (1 HSPs)
chr6 (231-281)||(21979423-21979473)
[»] chr1 (1 HSPs)
chr1 (13-58)||(17783061-17783107)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 207 - 343
Target Start/End: Original strand, 7765834 - 7765970
Alignment:
Q  207 cgtcatgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccacacagcattgg 306  Q
    ||||||||| ||| || | ||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7765834 cgtcatgatatagctttggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagcattgg 7765933  T
Q  307 tacattctggtttgtgggtatctggagaatttctcag 343  Q
    |||||||||||||||||||||||||||||||||||||    
T  7765934 tacattctggtttgtgggtatctggagaatttctcag 7765970  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 7786679 - 7786792
Alignment:
Q  230 cattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattctggtttgtgggtatct 329  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  7786679 cattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgaccacacagagttggtacattctggtttgtgggtatct 7786778  T
Q  330 ggagaatttctcag 343  Q
    || |||||||||||    
T  7786779 ggggaatttctcag 7786792  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 7877945 - 7878074
Alignment:
Q  214 atttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccacacagcattggtacattc 313  Q
    |||||||||||| || |||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | |||||| ||||||||    
T  7877945 atttaggttggattgtcattcttacctttgatttaatggaaaagaaattgtttgagatgcctcttccaaataatgttgaccatagagcattagtacattc 7878044  T
Q  314 tggtttgtgggtatctggagaatttctcag 343  Q
    |||||||||||||| |||||||||||||||    
T  7878045 tggtttgtgggtatttggagaatttctcag 7878074  T

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Target: chr4; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 207 - 336
Target Start/End: Complemental strand, 7773694 - 7773565
Alignment:
Q  207 cgtcatgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccacacagcattgg 306  Q
    |||| ||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |  |||||||    
T  7773694 cgtcgtgatttacgttggaatgtaattgtttcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaataatgttcaccatagtgcattgg 7773595  T
Q  307 tacattctggtttgtgggtatctggagaat 336  Q
    ||||||||||||||||||||| ||||||||    
T  7773594 tacattctggtttgtgggtatttggagaat 7773565  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 7908528 - 7908639
Alignment:
Q  206 acgtcatgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgaccacacagcattg 305  Q
    ||||| ||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| ||| ||||| |||||      
T  7908528 acgtcgtgatttaggtttgactgtcattgttgcctttgatttaatggaaaggaagttgtttgagatacctattccaagtgattttgtccacagagcatca 7908627  T
Q  306 gtacattctggt 317  Q
    | ||||||||||    
T  7908628 ggacattctggt 7908639  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 48898953 - 48899015
Alignment:
Q  225 aatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 287  Q
    |||| |||||||||||||||||||| |||||||||| |||| |||||| ||| |||| |||||    
T  48898953 aatgtcattgttgcctttgatttaacggaaaggaaactgttagagatgtctcctccagatgat 48899015  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 7237601 - 7237518
Alignment:
Q  212 tgatttaggttggaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgacca 295  Q
    |||||||| || | ||| ||| |||||  ||||||||||||||| ||||  ||||||||||||| |||||| |||| |||||||    
T  7237601 tgatttagatttggatgtcatagttgcgcttgatttaatggaaaagaaaacgtttgagatgcctgttccaagtgattttgacca 7237518  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 7771610 - 7771673
Alignment:
Q  224 gaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 287  Q
    ||||| ||||||| | |||||||||||||| | |||| |||||||||||||| |||||| ||||    
T  7771610 gaatgtcattgttacgtttgatttaatggagaagaaaatgtttgagatgcctgttccaagtgat 7771673  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 7790295 - 7790358
Alignment:
Q  224 gaatggcattgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 287  Q
    ||||| ||||||| | |||||||||||||| | |||| |||||||||||||| |||||| ||||    
T  7790295 gaatgtcattgttacgtttgatttaatggagaagaaaatgtttgagatgcctgttccaagtgat 7790358  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 50669300 - 50669345
Alignment:
Q  230 cattgttgcctttgatttaatggaaaggaaattgtttgagatgcct 275  Q
    |||||||||||||||||| |||||||||||| |||| || ||||||    
T  50669300 cattgttgcctttgatttgatggaaaggaaactgttagacatgcct 50669345  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 37826838 - 37826798
Alignment:
Q  231 attgttgcctttgatttaatggaaaggaaattgtttgagat 271  Q
    |||||||||||| ||||||||||||||||| |||| |||||    
T  37826838 attgttgcctttaatttaatggaaaggaaactgttagagat 37826798  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 4962357 - 4962303
Alignment:
Q  239 ctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttgac 293  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  4962357 ctttgatttaatggaaaggaaattgttagagatgcctcttcccaatgattttgac 4962303  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12195543 - 12195599
Alignment:
Q  231 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 287  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  12195543 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgat 12195599  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12439971 - 12440027
Alignment:
Q  231 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 287  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  12439971 attgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgat 12440027  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12200561 - 12200617
Alignment:
Q  231 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 287  Q
    ||||||||||||||||||||||||||||||||| | ||||| | ||||||| |||||    
T  12200561 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgat 12200617  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 12444989 - 12445045
Alignment:
Q  231 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgat 287  Q
    ||||||||||||||||||||||||||||||||| | ||||| | ||||||| |||||    
T  12444989 attgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgat 12445045  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 15349102 - 15349163
Alignment:
Q  231 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttccaaatgatgttga 292  Q
    |||||||| ||||||||||  ||||||||| ||||||||||||||| |||| ||||| ||||    
T  15349102 attgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttga 15349163  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 21979473 - 21979423
Alignment:
Q  231 attgttgcctttgatttaatggaaaggaaattgtttgagatgcctcttcca 281  Q
    |||||||||||||||||||| ||||||||| | |||||||| |||||||||    
T  21979473 attgttgcctttgatttaatagaaaggaaactttttgagatccctcttcca 21979423  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 17783107 - 17783061
Alignment:
Q  13 agaaaatcagtagaaccataaaaa-gttgttagaaagaaaaagcaca 58  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  17783107 agaaaatcagtagagccataaaaaagttgttagaaagaaaaagcaca 17783061  T

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