View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_high_25 (Length: 331)
Name: NF17199_high_25
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 36678085 - 36678359
Alignment:
| Q |
15 |
atgaacatggttgaacgatgacctcttttacttttagtaaattttaataaaataaataatcactctaacattacttactaacatcttctccttattatta |
114 |
Q |
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| T |
36678085 |
atgaacatggttgaacgatgaccccttttacttttagtaaattttaataaaataaataatcactctaacat-------------cttctccttattatta |
36678171 |
T |
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| Q |
115 |
ctttatttgtttgagtattttaaaatcaacattaaaaaattggcagttnnnnnnntattataaaatggagatatatatgtattggattctcaccgtagaa |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36678172 |
ctttatttgtttcagtattttaaaatcaacattaaaaaattggcagtt-------------aaaatggagatatatatgtattggattctcaccgtagaa |
36678258 |
T |
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| Q |
215 |
gtcgtcactagaaagatcacgttgccagaatgcatgctgaaagctcctgttgattcaagttctatattgcataattcaagagtttactcacacgaaatac |
314 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36678259 |
gtcgttactagaaagatcacgttgccagaatgcatgctgaaagctcctgttgattcaagttctatattgcataattcaagagtttactcacacgaaatac |
36678358 |
T |
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