View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_high_3 (Length: 621)
Name: NF17199_high_3
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 14 - 606
Target Start/End: Complemental strand, 32709057 - 32708469
Alignment:
| Q |
14 |
gcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaactta |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32709057 |
gcaaaggaagtagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaactta |
32708958 |
T |
|
| Q |
114 |
tggctatagctcttaatgatatggtcttgcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagataga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708957 |
tggctatagctcttaatgatatggtcttgcaggtaaattgtgacatcctaaatataatgtgttagtgttgatatttgatcatgcgtcactactagataga |
32708858 |
T |
|
| Q |
214 |
tcgaattcaccaagatattaatatatatgaaattccttttttctgtggattagggaaccataaaagaagaggagcttgatactttcaacatccctcaata |
313 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708857 |
tcgaattcaccaagatactaatat----gaaattccttttttatgtggattagggaaccataaaagaagaggagcttgatactttcaacatccctcaata |
32708762 |
T |
|
| Q |
314 |
cactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtgaattggaatgctcttgat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708761 |
cactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtgaattggaatgctcttgat |
32708662 |
T |
|
| Q |
414 |
caatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcatacaatgtgatgcagtgcatgagagccgtttctgaacctttgc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
32708661 |
caatggaatgctcttgcttgtgagtctcaaatgtctgaatcacttggcgatggtgcatacaatgtcatgcagtgcatgagagccgtttctgaacctttgc |
32708562 |
T |
|
| Q |
514 |
tagttagccactttggagagtctattattgatgagctctttgatcgctatcaagaaatcttagttgatcggatgtccaaggaaaaaactaaat |
606 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708561 |
tagttagacactttggagagtctattattgatgagctctttgatcgctatcaagaaatcttagttgatcggatgtccaaggaaaaaactaaat |
32708469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 32627466 - 32627340
Alignment:
| Q |
24 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagc |
123 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||| ||||||| || |
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| T |
32627466 |
tagttgaagggggttgcatgattataacatttgtaggaagaaaaagcgacaatccaacaagcaaggagtgttgttacatttgggaacttttggctatggc |
32627367 |
T |
|
| Q |
124 |
tcttaatgatatggtcttgcaggtaaa |
150 |
Q |
| |
|
||||||||| ||||||||| ||||||| |
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|
| T |
32627366 |
tcttaatgacatggtcttggaggtaaa |
32627340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 32703557 - 32703490
Alignment:
| Q |
83 |
agcaaggagtgttgctacatttgggaacttatggctatagctcttaatgatatggtcttgcaggtaaa |
150 |
Q |
| |
|
||||| |||||||| ||| |||||||| |||||||||| | ||||||||| ||||||||||||||||| |
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|
| T |
32703557 |
agcaaagagtgttgttacgtttgggaagttatggctatgggtcttaatgaaatggtcttgcaggtaaa |
32703490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 264 - 365
Target Start/End: Complemental strand, 32627132 - 32627031
Alignment:
| Q |
264 |
tagggaaccataaaagaagaggagcttgatactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcat |
363 |
Q |
| |
|
||||||| ||||||||||||| | || ||||||||||||| ||| ||| |||||||||||| |||||||||||||||||| | | |||||||||| |
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|
| T |
32627132 |
tagggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcat |
32627033 |
T |
|
| Q |
364 |
tt |
365 |
Q |
| |
|
|| |
|
|
| T |
32627032 |
tt |
32627031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 292 - 529
Target Start/End: Complemental strand, 27736133 - 27735896
Alignment:
| Q |
292 |
atactttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctga |
391 |
Q |
| |
|
||||||||||||||||| | || |||||||||||| |||||||| |||||||||||||| |||||||||||| |||| || ||||| |||||||| |
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|
| T |
27736133 |
atactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatcatttgtcatcaataaattggaggtttctga |
27736034 |
T |
|
| Q |
392 |
agtgaattggaatgctcttgatcaatggaatgctcttgcttgtgagtctcaaatgtctgaatcactcggcgatggtgcatacaatgtgatgcagtgcatg |
491 |
Q |
| |
|
||| |||||||||||||||||| | || ||||| ||| | ||| ||| ||||||| ||||||||| | |||| || ||||||| || || ||||| |
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|
| T |
27736033 |
agttaattggaatgctcttgatgattgtaatgcctttgactttgaatctgaaatgtcagaatcactcagagatgatggatacaatatggcacaatgcatt |
27735934 |
T |
|
| Q |
492 |
agagccgtttctgaacctttgctagttagccactttgg |
529 |
Q |
| |
|
|| || || ||||||||||||||||||| |||||||| |
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|
| T |
27735933 |
agggctgtggctgaacctttgctagttagtcactttgg |
27735896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 27736364 - 27736240
Alignment:
| Q |
24 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagc |
123 |
Q |
| |
|
|||||||||| | || |||||||||||| |||||||||| ||| | ||||| | |||||||||||||| |||||||||||||| |||||||| || |
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|
| T |
27736364 |
tagttgaaggagctcaaatgattctaacacttttaggaaggaaatgcgacaatccatcaagcaaggagtgttgttacatttgggaactcatggctatggc |
27736265 |
T |
|
| Q |
124 |
tcttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27736264 |
ccttaatgatatggtcttgcaggta |
27736240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 5811091 - 5810967
Alignment:
| Q |
24 |
tagttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaa-gaagtat--agcaaggagtgttgctacatttgggaacttatggctat |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||| ||| || || |||||||||| | | |||||||||||||| |||||||| |
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|
| T |
5811091 |
tagttgaaggtggtcacatgattctaacatttttaggacgaaaaa---acagtgatccatcaagcaaggagtctggttacatttgggaactcatggctat |
5810995 |
T |
|
| Q |
121 |
agctcttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
||||||||||||||||| ||||||||| |
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|
| T |
5810994 |
ggctcttaatgatatggttttgcaggta |
5810967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 5810796 - 5810680
Alignment:
| Q |
296 |
tttcaacatccctcaatacactccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgggagtttctgaagtg |
395 |
Q |
| |
|
||||||||||||| | || |||||||||||| || || | ||||||||||||| ||||||||||| ||||| |||||| | ||||||||||| |
|
|
| T |
5810796 |
tttcaacatccctaactattatccatctccatctgaggttgagttggaagttctcaccgaaggatcattctccatcagtcgattagaggtttctgaagta |
5810697 |
T |
|
| Q |
396 |
aattggaatgctcttga |
412 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
5810696 |
aattggaatgctcttga |
5810680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 8030519 - 8030641
Alignment:
| Q |
26 |
gttgaaggtggtcgcatgattctaacatttttaggaagaaaaagtgacaagaagtatagcaaggagtgttgctacatttgggaacttatggctatagctc |
125 |
Q |
| |
|
||||| || ||||| ||| |||| ||| | || |||||||||||||| | || |||||||| ||||||||||| |||||||| ||| | ||| | || | |
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|
| T |
8030519 |
gttgacgggggtcgtatggttctcacaatcttgggaagaaaaagtgatgataaatatagcaaagagtgttgctatatttgggagcttcttgctgttgccc |
8030618 |
T |
|
| Q |
126 |
ttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
||||||| ||||||||| ||||| |
|
|
| T |
8030619 |
ttaatgacatggtcttggaggta |
8030641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 21943132 - 21943087
Alignment:
| Q |
103 |
ttgggaacttatggctatagctcttaatgatatggtcttgcaggta |
148 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
21943132 |
ttgggaacttttggctatggctcttaatgatatggttatgcaggta |
21943087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 20116764 - 20116800
Alignment:
| Q |
102 |
tttgggaacttatggctatagctcttaatgatatggt |
138 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
20116764 |
tttgggaacttttggctacagctcttaatgatatggt |
20116800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 20117936 - 20118000
Alignment:
| Q |
317 |
tccatctccatcggaagtgaaattggaagttctcaaagaaggatcatttaccatcgatcgattgg |
381 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| | ||||| |||||| |||||||| ||||| |
|
|
| T |
20117936 |
tccatctccaactgaagtgaaattggaagttctaactgaagggtcatttgtcatcgatcaattgg |
20118000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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