View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_high_30 (Length: 308)
Name: NF17199_high_30
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 303
Target Start/End: Complemental strand, 27782888 - 27782606
Alignment:
| Q |
20 |
acttctccatttcaaacgatactctaacactggtaacgtcctgtgaaatagtataagatactctacgataatatcaagatattattatacattttatacc |
119 |
Q |
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| T |
27782888 |
acttctccatttcaaacgatactctaacactggaaacgtcctgtgaaatagtataagatactctacgataatatcaagatattattatacattttatacc |
27782789 |
T |
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| Q |
120 |
ttataacagttcaattttatttattatggaaacttaaaaatacatttcaaaacatgaaaaggaaaagcggtttcatggannnnnnnagcaatgaggagtc |
219 |
Q |
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| T |
27782788 |
ttataacagttcaattttatttattatggaaactt-taaatacatttcaaaacatgaaaaggaaaagcggtttcatggatttttttagcaatgaggagtc |
27782690 |
T |
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| Q |
220 |
aatttaatatatatgagtggattgcatggctttgatgtttatttcatgtacactctttatcaacgtattattacctatgcttct |
303 |
Q |
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| T |
27782689 |
aatttaatatatatgagtggattgcatggctttgatgtttatttcatgtacactctttatcaacgtattattatctatgtttct |
27782606 |
T |
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