View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_high_34 (Length: 282)
Name: NF17199_high_34
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 29496042 - 29495779
Alignment:
| Q |
3 |
catcgcagcaacttgaccaaagtaaggacccgtatctatgtctaggcacaccataataaatgagcaaattttatcaccatgacattctgcctagaattta |
102 |
Q |
| |
|
||||||| |||||||| |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29496042 |
catcgcaacaacttgatcaaagtaaggactcatatctatgtttaggcacaccataataaatgagcaaattttatcaccataacattctgcctagaattta |
29495943 |
T |
|
| Q |
103 |
tggtccacaaaataacaaattctgcaacacaaatcaaactacaccggtgcttcaatcttccataacagaatttgaagaaatatcttcagatcataaaaac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29495942 |
tggtccacaaaataacaaattctgcaacacaaatcaaactacaccggtgcttcaatcttccataacagaattttaagaaatatcttcagatcataaaaac |
29495843 |
T |
|
| Q |
203 |
aagaaatacatactgatatctgtgatgatgctgactgtgatgtcgatgctaccaaaggagtttt |
266 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
29495842 |
aagaaatacataaagatatttgtgatgatgttgactgtgatgttgatgctgccaaaggagtttt |
29495779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 6625165 - 6625274
Alignment:
| Q |
157 |
atcttccataacagaatttgaagaaatatcttcagatcataaaaacaagaaatacatactgatatctgtgatgatgctgactgtgatgtcgatgctacca |
256 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| | ||||| ||| |
|
|
| T |
6625165 |
atcttccataatagaattctaagaaatattttcagatcataaaaacaagaaatacatacagatgtttgtgatgatgctgactgtgatgccaatgctgcca |
6625264 |
T |
|
| Q |
257 |
aaggagtttt |
266 |
Q |
| |
|
|||||||||| |
|
|
| T |
6625265 |
aaggagtttt |
6625274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 6608952 - 6608843
Alignment:
| Q |
157 |
atcttccataacagaatttgaagaaatatcttcagatcataaaaacaagaaatacatactgatatctgtgatgatgctgactgtgatgtcgatgctacca |
256 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||||| ||||||||||||| ||| | |||||||||||||||||||||| | ||||| ||| |
|
|
| T |
6608952 |
atcttccataatagaattctaagaaatattttcagatcataaaaataagaaatacatacagatgtttgtgatgatgctgactgtgatgccaatgctgcca |
6608853 |
T |
|
| Q |
257 |
aaggagtttt |
266 |
Q |
| |
|
|||||||||| |
|
|
| T |
6608852 |
aaggagtttt |
6608843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 33046300 - 33046191
Alignment:
| Q |
155 |
caatcttccataacagaatttgaagaaatatcttcagatcataaaaacaagaaatacatactgatatctgtgatgatgctgactgtgatgtcgatgctac |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| || ||||| |||||||| ||| | |||||||| |||||||| |||| ||||||| | |
|
|
| T |
33046300 |
caatcttccataacagaattctaagaaatattttcagatcatgaagacaag--atacatacagatgtttgtgatgacgctgactgcgatgccgatgctgc |
33046203 |
T |
|
| Q |
255 |
caaaggagtttt |
266 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33046202 |
caaaggagtttt |
33046191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 19844237 - 19844128
Alignment:
| Q |
157 |
atcttccataacagaatttgaagaaatatcttcagatcataaaaacaagaaatacatactgatatctgtgatgatgctgactgtgatgtcgatgctacca |
256 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| | ||||| ||| |
|
|
| T |
19844237 |
atcttccataatagaattctaagaaatattttcagatcataaaaacaagaaatacatacagatgtttgtgatgatgctgactgtgatgccaatgctgcca |
19844138 |
T |
|
| Q |
257 |
aaggagtttt |
266 |
Q |
| |
|
|||||||||| |
|
|
| T |
19844137 |
aaggagtttt |
19844128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19844569 - 19844505
Alignment:
| Q |
1 |
agcatcgcagcaacttgaccaaagtaaggacccgtatctatgtctaggcacaccataataaatga |
65 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
19844569 |
agcatcgcaacaacttgaccaaagtaaggactcatatctatgtctaggcacaccataataaatga |
19844505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 11429441 - 11429300
Alignment:
| Q |
19 |
ccaaagtaaggacccgtatctatgtctaggcacaccataataaatgagcaaattttatcaccatgacattctgcctagaatttatggtccacaaaataac |
118 |
Q |
| |
|
||||||| ||||| | |||||||||||| ||||||||||| |||| ||||| | ||||| || |||||| ||||| ||||| || ||| |||||||| |
|
|
| T |
11429441 |
ccaaagttaggactcatatctatgtctaagcacaccataaaaaatcagcaacctccatcactataacattcagcctataatttctgccccagaaaataac |
11429342 |
T |
|
| Q |
119 |
aaattctg---caacacaaatcaaactacaccggtgcttcaa |
157 |
Q |
| |
|
||||| || ||| ||||||||||||| ||| ||||||||| |
|
|
| T |
11429341 |
aaattttgtaacaaaacaaatcaaactaaaccagtgcttcaa |
11429300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University