View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_high_35 (Length: 282)
Name: NF17199_high_35
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 264
Target Start/End: Original strand, 366029 - 366281
Alignment:
| Q |
10 |
aaaattataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccagtt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
366029 |
aaaattataactcaagagtatcatgactttatgtgtttcaattttgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccaact |
366128 |
T |
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| Q |
110 |
gttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
209 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366129 |
gttacatacaattaaatgtcgactttgcacc--tttttcatcggtgacttctctagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
366226 |
T |
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| Q |
210 |
actcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcct |
264 |
Q |
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| T |
366227 |
agtcgcatatccaagcccaggcgatccacccatatcatcttagcttctgagtcct |
366281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 258
Target Start/End: Complemental strand, 530193 - 529947
Alignment:
| Q |
10 |
aaaattataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccagtt |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
530193 |
aaaattataactcaacagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccaatt |
530094 |
T |
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| Q |
110 |
gttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
209 |
Q |
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|| ||||||| |||||||| ||||| ||||| |||| ||||||||| |||||||| ||||| | |||| ||||| |||| ||||||||||||| |
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| T |
530093 |
gtgacatacagttaaatgttgacttggcacc--tttttcatctgtgacttctctagggaaaggaatgcgaacctcaaataaaccgttgttaggagaaaac |
529996 |
T |
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| Q |
210 |
actcgcatatccaagcccaggcgatccacccatatcaacttagcttctg |
258 |
Q |
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| T |
529995 |
aaacgcatatctaagcccaaacgatctacccatatcacctttgcttctg |
529947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 520527 - 520275
Alignment:
| Q |
10 |
aaaattataactcaagagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatccagaggatggaagtttctttctacctcccaagccagtt |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
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| T |
520527 |
aaaattataactcatgagtatcatgactttatgtgtttcaattctgtaaccttctcaaaatactgaggatggaagtttctttctacctcccaagccaatt |
520428 |
T |
|
| Q |
110 |
gttacatacaattaaatgtcgacttcgcaccnnnnnnncatcggtgacttctatagggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
209 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
520427 |
gttacatacaattaaatgtcgacttcgcacc--tttttcatcggtgacttctctaaggaaatgaatgtggacctagaataagccgtagttaggagaaaac |
520330 |
T |
|
| Q |
210 |
actcgcatatccaagcccaggcgatccacccatatcaacttagcttctgagtcct |
264 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
520329 |
actcgcatatccaagcccaggcgatccacccatatcatcttagcttctgagtcct |
520275 |
T |
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