View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_high_36 (Length: 271)
Name: NF17199_high_36
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 8670962 - 8671217
Alignment:
| Q |
1 |
ttaaagagttgattacaaatgttttaattcaagagcctaattacaattttgtttaagttnnnnnnntttaatttaaagacctatttaaggtgtatttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8670962 |
ttaaagagttgattacaaatgttttaattcaagagcctaattacaattttgtttaagtgcaaattttttaatttaaagacctatttaaggtgtatttaaa |
8671061 |
T |
|
| Q |
101 |
ccnnnnnnn-gttatatcaactttcaccatcacaaccattgtatttagaaatttatttgtgtgctttccgttttaattttttgttatcactttgttaaat |
199 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8671062 |
ccttttttttgttatatcaactttcaccatcacaaccattgtatttagaaatttatttgtgtgctttccgttttaattttttgttatcactttgttaaat |
8671161 |
T |
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| Q |
200 |
aaatgttacattgttttctgtatctagagtttcgtattgttttcagtagttccaaa |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8671162 |
aaatgttacattgttttctgtatctagagtttcgtattgttttcagtagttccaaa |
8671217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8713745 - 8713987
Alignment:
| Q |
1 |
ttaaagagttgattacaaatgttttaattcaagagcctaattacaattttgtttaagttnnnnnnntttaatttaaagacctatttaaggtgtatttaaa |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |
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| T |
8713745 |
ttaaagatttgattacaaatgttttaattcaagagcctaattacaattttgtttaagtgcaaaatttttaatttaaggacctatttaaggtttatttaaa |
8713844 |
T |
|
| Q |
101 |
ccnnnnnnn-gttatatcaactttcaccatcacaaccattgtatttagaaatttatttgtgtgctttccgttttaattttttgttatcactttgttaaat |
199 |
Q |
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| T |
8713845 |
ccctttttttgttatataaattttcaccatcacaaccaatgtatttagaattttatttgtatgctttccgttttaatttttagttatcac-ttgttaaat |
8713943 |
T |
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| Q |
200 |
aaatgttacattgttttctgtatctagagtttcgtattgttttc |
243 |
Q |
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| T |
8713944 |
aaatgtaacattgttttctgtatctagagtttcgtattgttttc |
8713987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8689820 - 8689876
Alignment:
| Q |
1 |
ttaaagagttgattacaaatgttttaattcaagagcctaattacaattttgtttaag |
57 |
Q |
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||||||| |||||||||||||||||||||||| || || |||||||||||||||||| |
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| T |
8689820 |
ttaaagatttgattacaaatgttttaattcaatagtctgattacaattttgtttaag |
8689876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 13754718 - 13754615
Alignment:
| Q |
116 |
tcaactttcaccatcacaaccattgtatttagaaatttatttgtgtgctttccgttttaattttttgttatcacttt--gttaaataaatgttacattgt |
213 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
13754718 |
tcaaccttcaccatcacaaccattgtatttagaaatttatatgtgtgctttccgttttaattttttgctatcacttttaattaaagaaatgttacattgt |
13754619 |
T |
|
| Q |
214 |
tttc |
217 |
Q |
| |
|
|||| |
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|
| T |
13754618 |
tttc |
13754615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 13768120 - 13768017
Alignment:
| Q |
116 |
tcaactttcaccatcacaaccattgtatttagaaatttatttgtgtgctttccgttttaattttttgttatcacttt--gttaaataaatgttacattgt |
213 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |
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| T |
13768120 |
tcaacgttcaccatcacaaccattgtatttagaaatttataggtgtgctttccgttttaattttttgctatcacttttaattaaagaaatgttacattgt |
13768021 |
T |
|
| Q |
214 |
tttc |
217 |
Q |
| |
|
|||| |
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|
| T |
13768020 |
tttc |
13768017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 13733024 - 13732924
Alignment:
| Q |
120 |
ctttcaccatcacaaccattgtatttagaaatttatttgtgtgctttccgttttaattttttgttatcactt---tgttaaataaatgttacattgtttt |
216 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||| ||||||||||| |||| |||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
13733024 |
ctttcaccatcataaccgttgtatttagaaatttatatgtgtgctttctattttctttttttgttatcacttttattttaaagaaatgttacattgtttt |
13732925 |
T |
|
| Q |
217 |
c |
217 |
Q |
| |
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| |
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|
| T |
13732924 |
c |
13732924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 13740740 - 13740691
Alignment:
| Q |
116 |
tcaactttcaccatcacaaccattgtatttagaaatttatttgtgtgctt |
165 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13740740 |
tcaactttcaccatcacaaccattgtatttagaaatttatatgtgtgctt |
13740691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23430601 - 23430556
Alignment:
| Q |
1 |
ttaaagagttgattacaaatgttttaattcaagagcctaattacaa |
46 |
Q |
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||||||| |||||||||||||||||||||||| || || ||||||| |
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| T |
23430601 |
ttaaagatttgattacaaatgttttaattcaatagtctgattacaa |
23430556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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