View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_high_38 (Length: 267)
Name: NF17199_high_38
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 3651255 - 3651018
Alignment:
| Q |
15 |
aatatcttcttcatacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactcgttggagtt |
114 |
Q |
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| T |
3651255 |
aatatcttcttcatacaaataatttaatcattttcatatgatcaaaaccaatgcatctgccattgtttctctctaccaaaacctcaaactcattggagtt |
3651156 |
T |
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| Q |
115 |
acggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaatagatgaagaa |
214 |
Q |
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| T |
3651155 |
acggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaatagatgaagaa |
3651056 |
T |
|
| Q |
215 |
tcagcatcttaatcaatgaattttgtggaggtgataac |
252 |
Q |
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| T |
3651055 |
tcagcatcttaatcaatgaattttgtggaggtgataac |
3651018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 74 - 192
Target Start/End: Original strand, 38466933 - 38467051
Alignment:
| Q |
74 |
ccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgc |
173 |
Q |
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| T |
38466933 |
ccattgtttctctcaaccaaaacctcaaattcgttgtagttacggtccaccaacatagcatatcgaccaagttcatccccaaagtcatgaccaaaaaggg |
38467032 |
T |
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| Q |
174 |
ttggcaaaacaaccatccc |
192 |
Q |
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| T |
38467033 |
ttggcaatacaaccatccc |
38467051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 10196752 - 10196590
Alignment:
| Q |
75 |
cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct |
174 |
Q |
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| T |
10196752 |
cattgttcctctcgaccaaaacctcgaactcattatagttagaatccaccaaccttgcgtagcgtccaatttggcccccaaagtcatgaccaaagattct |
10196653 |
T |
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| Q |
175 |
tggcaaaacaaccatcccctaaaagtaaatagatgaagaatcagcatcttaatcaatgaattt |
237 |
Q |
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| T |
10196652 |
tagcgaaacaaccatgccctaatagtcaataaaagaagaaacaaaatgttaataaatgaattt |
10196590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 19462519 - 19462449
Alignment:
| Q |
133 |
gtagcgaccaagttcgtccccaaagtcatggccaaacatgcttggcaaaacaaccatcccctaaaagtaaa |
203 |
Q |
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| T |
19462519 |
gtagcgtccaatttggtctccaaagtcatggccaaacattcttggcaaaacaactatgccctaatagtaaa |
19462449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 35349772 - 35349683
Alignment:
| Q |
73 |
gccattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatg |
162 |
Q |
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| T |
35349772 |
gccattgtttcgctcaaccaaaacctcaaattcgttgtagttacagtccaccaacatagcatatcgaccaagttcatccccaaagtcatg |
35349683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 31941764 - 31941891
Alignment:
| Q |
75 |
cattgtttctctctaccaaaacctcaaactcgttggagttacggtccaccaacactgcgtagcgaccaagttcgtccccaaagtcatggccaaacatgct |
174 |
Q |
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| T |
31941764 |
cattgttcctctcgaccaacacctcaaactcattgtagttagaatccaccagacttgcatagcgtccaatttggtctccaaagtcatgaccaaacattct |
31941863 |
T |
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| Q |
175 |
tggcaaaacaaccatcccctaaaagtaaa |
203 |
Q |
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| T |
31941864 |
tcgcaaaacaa-cattccctaatagtaaa |
31941891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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