View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_high_43 (Length: 249)

Name: NF17199_high_43
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_high_43
NF17199_high_43
[»] chr4 (23 HSPs)
chr4 (18-241)||(43823404-43823626)
chr4 (40-236)||(2828241-2828446)
chr4 (40-236)||(51040791-51040996)
chr4 (40-218)||(27626576-27626763)
chr4 (77-169)||(5485958-5486050)
chr4 (40-167)||(43778445-43778572)
chr4 (40-236)||(4520281-4520486)
chr4 (40-169)||(39085058-39085187)
chr4 (38-221)||(34460279-34460471)
chr4 (40-169)||(39190725-39190854)
chr4 (40-169)||(44992864-44992993)
chr4 (40-169)||(39922913-39923042)
chr4 (40-154)||(47942667-47942781)
chr4 (40-154)||(44792990-44793104)
chr4 (48-223)||(35997610-35997794)
chr4 (40-221)||(10371113-10371303)
chr4 (40-151)||(230492-230603)
chr4 (40-132)||(42879331-42879423)
chr4 (80-154)||(10767871-10767945)
chr4 (110-151)||(50133027-50133068)
chr4 (189-224)||(26397756-26397791)
chr4 (115-158)||(32653548-32653591)
chr4 (115-149)||(39294772-39294806)
[»] scaffold1041 (2 HSPs)
scaffold1041 (26-236)||(2721-2940)
scaffold1041 (40-142)||(2154-2252)
[»] chr8 (23 HSPs)
chr8 (26-236)||(25705341-25705560)
chr8 (40-236)||(31823306-31823511)
chr8 (40-236)||(33368815-33369020)
chr8 (38-236)||(37524912-37525119)
chr8 (26-236)||(25356391-25356610)
chr8 (40-236)||(33158712-33158917)
chr8 (48-236)||(25370590-25370787)
chr8 (48-236)||(461240-461437)
chr8 (40-236)||(25707131-25707336)
chr8 (40-236)||(33748388-33748593)
chr8 (40-231)||(32824106-32824306)
chr8 (77-236)||(38881493-38881660)
chr8 (40-236)||(25373452-25373657)
chr8 (40-218)||(1322162-1322349)
chr8 (40-169)||(40019212-40019341)
chr8 (48-155)||(24526960-24527067)
chr8 (38-236)||(9876392-9876599)
chr8 (38-236)||(42894830-42895031)
chr8 (77-170)||(12515177-12515270)
chr8 (115-162)||(28432352-28432399)
chr8 (45-154)||(8655908-8656017)
chr8 (63-151)||(38884761-38884849)
chr8 (189-225)||(9186476-9186512)
[»] chr7 (24 HSPs)
chr7 (40-236)||(33775464-33775669)
chr7 (49-236)||(2168664-2168860)
chr7 (77-236)||(38614622-38614790)
chr7 (40-221)||(3690206-3690396)
chr7 (40-236)||(46994716-46994921)
chr7 (38-236)||(23955115-23955322)
chr7 (48-231)||(36756718-36756910)
chr7 (48-231)||(36766242-36766434)
chr7 (45-155)||(47339837-47339947)
chr7 (40-169)||(30108621-30108750)
chr7 (40-169)||(45465090-45465219)
chr7 (77-236)||(33037787-33037955)
chr7 (48-231)||(36762515-36762707)
chr7 (38-147)||(4321092-4321201)
chr7 (48-235)||(40785379-40785575)
chr7 (40-154)||(8421472-8421586)
chr7 (69-151)||(11685563-11685645)
chr7 (40-154)||(35342481-35342595)
chr7 (40-169)||(46810761-46810889)
chr7 (77-165)||(34785022-34785110)
chr7 (77-165)||(34784132-34784220)
chr7 (69-152)||(6058393-6058476)
chr7 (116-154)||(34692669-34692707)
chr7 (110-151)||(25971806-25971847)
[»] chr3 (23 HSPs)
chr3 (40-236)||(33111897-33112102)
chr3 (38-236)||(48635203-48635410)
chr3 (40-236)||(45897106-45897311)
chr3 (47-155)||(33851045-33851153)
chr3 (55-230)||(23775489-23775673)
chr3 (45-243)||(2975521-2975728)
chr3 (40-236)||(23887254-23887459)
chr3 (40-236)||(1847475-1847680)
chr3 (40-169)||(37865440-37865569)
chr3 (38-226)||(40508547-40508744)
chr3 (40-155)||(18428805-18428918)
chr3 (59-139)||(51453878-51453958)
chr3 (38-236)||(31885572-31885778)
chr3 (77-155)||(45255576-45255654)
chr3 (77-227)||(30501210-30501369)
chr3 (40-156)||(24381800-24381917)
chr3 (80-221)||(40998611-40998761)
chr3 (69-151)||(5127371-5127453)
chr3 (110-151)||(5134626-5134667)
chr3 (185-222)||(18428951-18428988)
chr3 (77-154)||(26447847-26447924)
chr3 (170-227)||(26447942-26447999)
chr3 (189-225)||(7589502-7589538)
[»] chr5 (13 HSPs)
chr5 (40-236)||(40330345-40330550)
chr5 (38-236)||(38176686-38176893)
chr5 (38-236)||(38203910-38204117)
chr5 (38-236)||(33257590-33257797)
chr5 (40-236)||(32089755-32089960)
chr5 (38-229)||(32835930-32836130)
chr5 (45-236)||(43316841-43317041)
chr5 (48-236)||(35291112-35291309)
chr5 (40-236)||(18726621-18726823)
chr5 (40-169)||(42619345-42619474)
chr5 (48-156)||(24232216-24232324)
chr5 (128-165)||(1344724-1344761)
chr5 (198-230)||(24497896-24497928)
[»] chr1 (17 HSPs)
chr1 (40-236)||(31803530-31803735)
chr1 (40-236)||(46636821-46637026)
chr1 (38-221)||(44159139-44159331)
chr1 (40-221)||(6576950-6577140)
chr1 (37-231)||(42136079-42136282)
chr1 (40-156)||(5784786-5784902)
chr1 (40-222)||(33679315-33679506)
chr1 (38-155)||(45379139-45379256)
chr1 (40-156)||(35478143-35478259)
chr1 (115-165)||(25172945-25172995)
chr1 (40-153)||(27952422-27952535)
chr1 (80-221)||(47264220-47264370)
chr1 (40-169)||(11152601-11152730)
chr1 (170-236)||(18180674-18180740)
chr1 (40-119)||(18180556-18180635)
chr1 (170-221)||(35478282-35478333)
chr1 (69-151)||(43870238-43870320)
[»] chr2 (12 HSPs)
chr2 (40-231)||(42003325-42003525)
chr2 (37-236)||(37418599-37418807)
chr2 (38-236)||(42880641-42880848)
chr2 (40-169)||(28248081-28248210)
chr2 (40-156)||(11021589-11021705)
chr2 (40-154)||(41708351-41708465)
chr2 (40-231)||(40978-41177)
chr2 (48-143)||(33257-33352)
chr2 (176-236)||(35499-35559)
chr2 (40-222)||(15373732-15373923)
chr2 (115-162)||(38149928-38149975)
chr2 (77-169)||(11312944-11313036)
[»] scaffold0070 (1 HSPs)
scaffold0070 (81-236)||(57498-57658)
[»] chr6 (5 HSPs)
chr6 (40-169)||(17950617-17950746)
chr6 (40-222)||(30639667-30639858)
chr6 (40-154)||(4646137-4646251)
chr6 (80-221)||(29114621-29114771)
chr6 (47-119)||(35174454-35174526)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 43823626 - 43823404
Alignment:
Q  18 ggatcaaccaaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgtt 117  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  43823626 ggatcaaccaaaaacgtcttttaattgtgcgaaataacaatttaatctttaaatttgtcaaatgtcaatcaagttagtcattctgttcaatcggg-cgtt 43823528  T
Q  118 aatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggcattggctgataatagcaaacatttcaaatgaccaaattgattgatttgc 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43823527 aacggtgctgacgtgaccgttaacctctcacatgtcagatgtcacatagacattagctgataatagcaaacatttcaaatgaccaaattgattgatttgc 43823428  T
Q  218 agaaaatgttttggctttcatctc 241  Q
    ||||||||||||||||||| ||||    
T  43823427 agaaaatgttttggctttcttctc 43823404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 2828446 - 2828241
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||| | | | ||||| |  |||||||||  |||||    
T  2828446 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctgttcaaactgagtgttaacgaggctgacgtggtcgtta 2828347  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||  || ||| |||||||||||||||||||||||||||||    
T  2828346 acctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgcagaaaatgttttg 2828247  T
Q  231 gctttc 236  Q
    ||||||    
T  2828246 gctttc 2828241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 51040791 - 51040996
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||| ||||  | ||||| | ||||||||||||||| |||| || ||||||| ||| || |||| || |||||||||||| |||    
T  51040791 aattatgcgaaatatcaattcaatccctgaatttgttaaatgtcaatcaagtcagtccttttgttcaaacggagcattaacggggctgacgtgaccatta 51040890  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||||| ||||||||||         ||| | ||||| | ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  51040891 acctctcacatgtcagatgccacataggcaaggactaatttgtccgataaaaacaaacatttcaaaggactaaactgattgatttgcagaaaatgttttg 51040990  T
Q  231 gctttc 236  Q
    ||||||    
T  51040991 gctttc 51040996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 27626763 - 27626576
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||  |||||||||| ||| ||||||| || ||||||||||||||||    
T  27626763 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtacttctgttcaaacggagcgttaacggggctgacgtgaccgtta 27626664  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgca 218  Q
     |||||||||||| ||| ||||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||    
T  27626663 gcctctcacatgttagacgtcacgtaggcaaggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgca 27626576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 5486050 - 5485958
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca 169  Q
    |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||    
T  5486050 aaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtgaccgttaacctctcacatgtcagatgtcacgtaggca 5485958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 43778445 - 43778572
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  ||||||| | |||||||||||||||||||| ||| |||||| |||  |||||| || ||||||||| ||||||    
T  43778445 aattatgcgaaatatcaatttaatccctaaatttgttaaatgtcaatcaagttagtccttcagttcaaacggaacgttaacggggctgacgtggccgtta 43778544  T
Q  140 acctctcacatgtcagatgtcacatagg 167  Q
    ||||||||||||||||||| ||| ||||    
T  43778545 acctctcacatgtcagatgccacgtagg 43778572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 4520486 - 4520281
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||| |  || ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || ||| | ||| || |||    
T  4520486 aattatgcgaaatatcaacttagttcttgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggagctaatgtggccttta 4520387  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    || |||||||||||||| | ||| || |||         ||||||||||||| ||||| ||||||| ||| |||| ||||||||||||||||||||||||    
T  4520386 acatctcacatgtcagacgccacgtaagcagagactaatttggctgataataacaaacttttcaaaggactaaatcgattgatttgcagaaaatgttttg 4520287  T
Q  231 gctttc 236  Q
    ||||||    
T  4520286 gctttc 4520281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 39085187 - 39085058
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  39085187 aattatgcgaaatatcaatttaatccatgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 39085088  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  39085087 acctctcacatgtcagacgccacgtaggca 39085058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 34460279 - 34460471
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||| ||||| ||||||||||  ||||||| | || |||| ||||| ||||||||||| ||||| | ||||||||| || | ||||||| ||||    
T  34460279 ttaattatgcaaaatatcaatttaatccctaaatttgttaattgtcgatcaatttagtcattctattcaaacagggcgttaaaggggatgacgtggccgt 34460378  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||||||||||||||| | | ||||||||||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||    
T  34460379 taacctctcacatgtcatacgccacataggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaa 34460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 39190854 - 39190725
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || | ||||||| ||||||    
T  39190854 aattatgcgaaatatcaatttaatccgtgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggttgacgtggccgtta 39190755  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  39190754 acctctcacatgtcagacgccacgtaggca 39190725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 44992864 - 44992993
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | | ||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  44992864 aattatgcgaaatatcaatttaatccctgagtttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 44992963  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  44992964 acctctcacatgtcagacgccacgtaggca 44992993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 39923042 - 39922913
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| | ||||| || ||||||||| ||||||    
T  39923042 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcggttcaaacggagtgttaacggggctgacgtggccgtta 39922943  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||| ||||||| | ||| ||||||    
T  39922942 acctctcacctgtcagacgccacgtaggca 39922913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 47942781 - 47942667
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | || |||||||||| ||| |||||||| |||| |||| |||||| || ||||||||| ||||||    
T  47942781 aattatgcgaaatatcaatttaatccttgaatttgttaattgtcaatcaatttaatcattctgatcaaacgggccgttaacggggctgacgtggccgtta 47942682  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  47942681 acctcttacatgtca 47942667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 44792990 - 44793104
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  44792990 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 44793089  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  44793090 acctcttacatgtca 44793104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 35997794 - 35997610
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | || |||||||||| |||||| |||||||||| ||| || |||| || |||||||||  ||||||||||| |    
T  35997794 gaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctgttcaaacggagcattaacggggctgacgtggtcgttaacctctta 35997695  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaa 223  Q
    ||||||| | | ||| ||||||         ||||| ||||||| ||||||||||||| ||| || |||||||||||||| ||||    
T  35997694 catgtcatacgccacgtaggcagggactaatttggccgataataacaaacatttcaaaggactaacttgattgatttgcaaaaaa 35997610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 10371113 - 10371303
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||| |||  | ||||| | || |||||||||| |||||| ||||| |||| |||  |||||| || ||||||||| ||||||    
T  10371113 aattatgcgaaatatcaatttcatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacggcccgttaacggggctgacgtggccgtta 10371212  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||| |||||||| | | ||| ||||||         ||||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  10371213 acctcttacatgtcatacgccacgtaggcagggactaatttggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 10371303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 230492 - 230603
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||| ||| | |||||  || ||||| ||||| ||||||  ||||||||||  ||| ||||| |||||||||||| ||||||    
T  230492 aattatgcgaaatatcaaattagtctctgaatttggcatatgtcgatcaatttagtccctctgttcaatttgggtgttaacggtgctgacgtggccgtta 230591  T
Q  140 acctctcacatg 151  Q
    ||||||||||||    
T  230592 acctctcacatg 230603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 42879331 - 42879423
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtg 132  Q
    |||| ||||||||| ||||||||||  | ||||| | ||||||||||||||| |||| ||| |||||| ||| ||||||| || |||||||||    
T  42879331 aattatgcgaaatatcaatttaatccatgaatttgttaaatgtcaatcaagtcagtccttcagttcaaacggagcgttaacggggctgacgtg 42879423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 10767945 - 10767871
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    |||||||||| |||||| ||||| |||| |||| | |||| || ||||||||| |||||||||||| ||||||||    
T  10767945 tgtcaatcaatttagtccttctggtcaaacgggccattaacggggctgacgtggccgttaacctcttacatgtca 10767871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 50133068 - 50133027
Alignment:
Q  110 ggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  50133068 ggggcgttaacggtgatgacgtgaccgttaacctctcacatg 50133027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 26397791 - 26397756
Alignment:
Q  189 atttcaaatgaccaaattgattgatttgcagaaaat 224  Q
    ||||| ||||||||||||||||||||||||||||||    
T  26397791 atttccaatgaccaaattgattgatttgcagaaaat 26397756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 32653591 - 32653548
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatg 158  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||    
T  32653591 gttaacggtgctgacgtggtcgttaacctctcacatgtcagatg 32653548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 39294806 - 39294772
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcaca 149  Q
    |||||||||||||||||| ||||||||||||||||    
T  39294806 gttaatggtgctgacgtggccgttaacctctcaca 39294772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 2940 - 2721
Alignment:
Q  26 caaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgc 125  Q
    |||||||| ||||||||| || ||||||||||||||||| || ||||| |||||||||| ||||||||||| |||| ||||| ||| | |||||||||||    
T  2940 caaaaacgtcttttaattatgagaaataacaatttaatccttgaatttgtcaaatgtcattcaagttagtccttctattcaaccggagtgttaatggtgc 2841  T
Q  126 tgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttg 216  Q
    | |||||  ||||||||| |||||||||||| | ||||||||||         ||||| |||||||  |||||||||||| ||||| ||||||||||||     
T  2840 taacgtggtcgttaacctttcacatgtcagacgccacataggcagtgactaatttggccgataataataaacatttcaaaggaccatattgattgattta 2741  T
Q  217 cagaaaatgttttggctttc 236  Q
    ||||||||||||||| ||||    
T  2740 cagaaaatgttttggttttc 2721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 142
Target Start/End: Original strand, 2154 - 2252
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||||||  ||||||| ||| | |||||||||||||||| || |||    |||||||||||| ||||||||||||  |||||    
T  2154 aattatgcgaaatatcaacttaatccctaaatttgtcagacgtcaatcaagttagtctttttgt----tcggggcgttaacggtgctgacgtggtcgtta 2249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 25705341 - 25705560
Alignment:
Q  26 caaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgc 125  Q
    |||||||| || | |||| || ||||||||||||||||  || |||||||||||||||||||||||||||| |||| ||||| ||| | ||||||||||     
T  25705341 caaaaacgtctctcaattatgggaaataacaatttaattcttgaatttatcaaatgtcaatcaagttagtccttctattcaaccggagtgttaatggtgt 25705440  T
Q  126 tgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttg 216  Q
    |||||||   |||||||| |||||||||||| | ||||||||||         ||||||||||||| ||||||||||||| ||| ||||||||||||||     
T  25705441 tgacgtggttgttaacctttcacatgtcagacgccacataggcatggactaatttggctgataataacaaacatttcaaaggactaaattgattgattta 25705540  T
Q  217 cagaaaatgttttggctttc 236  Q
    || |||||||||||||||||    
T  25705541 cataaaatgttttggctttc 25705560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 31823511 - 31823306
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  ||||||| | |||||||||||||||||||| || ||||||| ||| ||||||| || ||||||||| ||||||    
T  31823511 aattatgcgaaatatcaatttaatccctaaatttgttaaatgtcaatcaagttagtccttatgttcaaacggagcgttaacggggctgacgtggccgtta 31823412  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| |||| |         |||| |||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  31823411 acctctcacatgtcagacgccacgtaggtagggactaatttggttgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 31823312  T
Q  231 gctttc 236  Q
    ||||||    
T  31823311 gctttc 31823306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33368815 - 33369020
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||| | | || ||||||||||||||||| ||||||    
T  33368815 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctgttcaaccagagcattaatggtgctgacgtggccgtta 33368914  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||| ||         ||||| ||||||| ||||||||| | | ||||||||||||||||||||||||||| |||||    
T  33368915 acctctcacatgtcagacgccacgtagacaatgactaatttggccgataataacaaacattttagaggaccaaattgattgatttgcagaaaatattttg 33369014  T
Q  231 gctttc 236  Q
    ||||||    
T  33369015 gctttc 33369020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 37524912 - 37525119
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| || |||||| |||| |||||| | ||||| | |||||||||||||||||||| |||||||||| ||| || |||||||  |||||||||||||    
T  37524912 ttaattatgtgaaatatcaatctaatctctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcattaatgggactgacgtgaccgt 37525011  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| ||||| | ||||         ||||| ||||| | ||||||||||||| ||| ||| |||||||||||||||||||||||    
T  37525012 taacctctcacatgtcagacgtcacgttggcagggactaatttggccgataaaaacaaacatttcaaaggactaaactgattgatttgcagaaaatgttt 37525111  T
Q  229 tggctttc 236  Q
    ||||||||    
T  37525112 tggctttc 37525119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 25356391 - 25356610
Alignment:
Q  26 caaaaacggcttttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgc 125  Q
    |||||||| ||||||||| || ||||||||||||||||| ||  |||| |||||||||| |||||||||||||||| ||||| ||| | |||||||||||    
T  25356391 caaaaacgtcttttaattatgggaaataacaatttaatccttgtatttgtcaaatgtcactcaagttagtcattctattcaaccggagtgttaatggtgc 25356490  T
Q  126 tgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttg 216  Q
    | |||||  | ||||||| |||||||||||| | ||||||||||         || || | ||||| ||||||||||||| ||||| ||||||||||||     
T  25356491 taacgtggtcattaacctttcacatgtcagacgccacataggcagggactaattttgccgttaataacaaacatttcaaaggaccatattgattgattta 25356590  T
Q  217 cagaaaatgttttggctttc 236  Q
    ||||||||||||||| ||||    
T  25356591 cagaaaatgttttggttttc 25356610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33158712 - 33158917
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||| ||||||||| ||||||||||  |  ||||||| || ||||||||| ||||||    
T  33158712 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaattaagttagtccttctgttcaaaggaagcgttaacggggctgacgtggccgtta 33158811  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||||||||||||||||   ||| ||||||         ||||| ||||| | ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  33158812 acctctcacatgtcagacaccacgtaggcagagactaatttggccgataagaacaaacatttcaaaggactaaagtgattgatttgcagaaaatgttttg 33158911  T
Q  231 gctttc 236  Q
    ||||||    
T  33158912 gctttc 33158917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 25370590 - 25370787
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    ||||||| |||||||||  | ||||| |||||||||||||||||||||| |||| ||||| | | | |||||||||| |||||||  ||||||||| |||    
T  25370590 gaaataaaaatttaatccctgaatttgtcaaatgtcaatcaagttagtccttctattcaaccagagtgttaatggtgttgacgtggtcgttaacctttca 25370689  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    |||||||   | ||||||||||         ||| | ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  25370690 catgtcaagcgccacataggcagggactaatttgaccgataataacaaacatttcaaaggaccaaattgattgatttacagaaaatgttttggctttc 25370787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 461240 - 461437
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||||||||||||||  | ||||| | |||||||||||||||||||| || ||||||| ||| | ||||| || |||||| | |||||||||||||||    
T  461240 gaaataacaatttaatccctgaatttgttaaatgtcaatcaagttagtccttttgttcaaacggagtgttaacggggctgacatcaccgttaacctctca 461339  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||||||| | | ||||||||||         |||||  |||| | ||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  461340 catgtcatacgccacataggcaaggactaatttggccaataaaaacaaacatttcaaaggactaaactgattgatttgcagaaaatgtcttggctttc 461437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 25707336 - 25707131
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| ||||||  | ||||| | | | ||||||||||||| || ||||||| ||   ||||||||| | |||||||||||||||||    
T  25707336 aattatgcgaaatatcaacttaatccctgaatttgtgagacgtcaatcaagttaatccttctgttaaactagggcgttaacgatgctgacgtgaccgtta 25707237  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| ||||||||||||||||||||||| |         ||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||  | |||||    
T  25707236 acctttcacatgtcagatgtcacataggtagagactaatttggccgataataacaaacatttcaaaggaccatattgattgatttgcagaattttttttg 25707137  T
Q  231 gctttc 236  Q
    ||||||    
T  25707136 gctttc 25707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33748388 - 33748593
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||   | ||||| | |||||||||||||||||||| || ||||| | ||| ||||||| || |||||||||  |||||    
T  33748388 aattatgcgaaatatcaatttaattcctgaatttgttaaatgtcaatcaagttagtccttatgttcgaacggagcgttaacggggctgacgtggtcgtta 33748487  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||| |||||||||||    
T  33748488 acctttcacatgtcagacgccacgtaggcagagactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcaaaaaatgttttg 33748587  T
Q  231 gctttc 236  Q
    ||||||    
T  33748588 gctttc 33748593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 32824306 - 32824106
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||| | |||||||||| ||| ||||||| || | ||||||||||| ||    
T  32824306 aattatgcgaaatatcaatttaatcactgaatttgttaaatgtcaatcaagttagcccttctgttcaaacggagcgttaacggggttgacgtgaccgcta 32824207  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| |||| |         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | |||||    
T  32824206 acctctcacatgtcagacgccacgtaggtagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttg 32824107  T
Q  231 g 231  Q
    |    
T  32824106 g 32824106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 38881493 - 38881660
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggcattggct- 175  Q
    |||||||||||||||||| | |||||||||| ||  ||||||| |||||||||||| |||||||| ||||||||| |||| | ||| |||||| || ||     
T  38881493 aaatgtcaatcaagttagcccttctgttcaaccgtagcgttaacggtgctgacgtggccgttaacttctcacatg-cagacgccacgtaggcaatgacta 38881591  T
Q  176 --------gataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
            ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  38881592 atttggtcgataataacaaacatttcaaatgatcaaattgattgatttgcagagaatgttttggctttc 38881660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 25373657 - 25373452
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||| |||||   | ||||| ||| | |||||||||||||||| ||||||| || | ||||||||| | || ||||||| ||||||    
T  25373657 aattatgcgaaatatcaacttaattcctgaatttgtcagacgtcaatcaagttagtccttctgttaaaccagggcgttaacgatgttgacgtggccgtta 25373558  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | |||||||| |         ||| | ||||||| |||||||||||||||||||||||||||||| |||||||  |||||||    
T  25373557 acctttcacatgtcagacgccacataggtagagactaatttgtccgataatatcaaacatttcaaatgaccaaattgattgatatgcagaatttgttttg 25373458  T
Q  231 gctttc 236  Q
    ||||||    
T  25373457 gctttc 25373452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 1322349 - 1322162
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||  | ||||| | |||| |||||||||||||||||||||||||| ||| ||||||| || |||||||||  |||||    
T  1322349 aattatgcaaaatatcaatttaatccctgaatttgttaaatatcaatcaagttagtcattctgttcaaacggagcgttaacggggctgacgtggtcgtta 1322250  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgca 218  Q
    ||||||||||||||||  | ||||||||||         ||||| ||||||| |||||||||  || ||| |||||||||||||||||    
T  1322249 acctctcacatgtcaggcgccacataggcaaggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgca 1322162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 40019212 - 40019341
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || |||| |||| ||||||    
T  40019212 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgtcgtggccgtta 40019311  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  40019312 acctctcacatgtcagacgccacgtaggca 40019341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 24526960 - 24527067
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || |||  |||||||||||||||||||    
T  24526960 gaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctatcgtgaccgttaacctctca 24527059  T
Q  148 catgtcag 155  Q
    ||||||||    
T  24527060 catgtcag 24527067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 9876599 - 9876392
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||| ||||| |||||||||   | ||||| | ||||||||||||||||| || |||||||||| | | || |||| || ||||||||| ||||    
T  9876599 ttaattatgcaaaatatcaatttaatacctgaatttgttaaatgtcaatcaagttaatccttctgttcaaacagagctttaacggggctgacgtggccgt 9876500  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||| ||||||||||||| | ||| ||| ||         ||||| ||||||| |||||||||  || ||| ||||||||||||||| |||||||||||    
T  9876499 taaccactcacatgtcagacgccacgtagacatggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgtagaaaatgttt 9876400  T
Q  229 tggctttc 236  Q
    || |||||    
T  9876399 tgactttc 9876392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 42894830 - 42895031
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||||||| ||  || ||||||| |   || ||||| ||||    
T  42894830 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgtttaaatggagcgttaacgagactaacgtggccgt 42894929  T
Q  138 taacctctcacatgtcagatgtcacataggca-----ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggc 232  Q
    ||||||||||||||||  ||| ||   ||| |     ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||||| ||||| |    
T  42894930 taacctctcacatgtc-catg-caggcaggaactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatattttgac 42895027  T
Q  233 tttc 236  Q
    ||||    
T  42895028 tttc 42895031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 12515177 - 12515270
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggcat 170  Q
    ||||||||||||| ||||||  || ||||||| || | ||||| |||||||||||| ||||||| ||||||||||||||||||| |||| ||||    
T  12515177 aaatgtcaatcaatttagtccctccgttcaattggagtgttaacggtgctgacgtggccgttaagctctcacatgtcagatgtcgcataagcat 12515270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 28432352 - 28432399
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcac 162  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  28432352 gttaacggtgctgacgtggtcgttaacctctcacatgtcagatgtcac 28432399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 8656017 - 8655908
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||    ||||| | || |||||||||| ||| || ||||||||||  |||||||||| || ||||| |||  | ||||||||    
T  8656017 tgcgaaatatcaatttaatcccagaatttgttaattgtcaatcaatttaatccttctgttcaaatggggcgttaacggggctgatgtggtcattaacctc 8655918  T
Q  145 tcacatgtca 154  Q
    ||||||||||    
T  8655917 tcacatgtca 8655908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 38884849 - 38884761
Alignment:
Q  63 tctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||||| ||| ||||||||||| ||| |   || ||||||| |||| ||||| |||||||| |||||||||||||| |||||||    
T  38884849 tctttgaatttgtcatatgtcaatcaatttaattcctccgttcaattggggtgttaacggtgctgatgtgaccgttaacctatcacatg 38884761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 9186512 - 9186476
Alignment:
Q  189 atttcaaatgaccaaattgattgatttgcagaaaatg 225  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  9186512 atttccaatgactaaattgattgatttgcagaaaatg 9186476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33775464 - 33775669
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||||| |||||||||||||||||||| |||||||||| ||| || |||| || |||||| |||||||||    
T  33775464 aattatgcgaaatatcaatttaatccctgaatttattaaatgtcaatcaagttagtccttctgttcaaacggagcattaacggggctgacatgaccgtta 33775563  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  33775564 acctttcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 33775663  T
Q  231 gctttc 236  Q
    ||||||    
T  33775664 gctttc 33775669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 236
Target Start/End: Complemental strand, 2168860 - 2168664
Alignment:
Q  49 aaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcac 148  Q
    ||||| ||||||| || || ||||| | |||||||||||||||||||| |||||||||| ||| || |||| || ||||||||| |||||||||||||||    
T  2168860 aaatatcaatttagtccttgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcattaacggggctgacgtggccgttaacctctcac 2168761  T
Q  149 atgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    |||||||| | ||| ||||||         ||||| ||||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  2168760 atgtcagacgccacgtaggcagtgactaatttggccgataataactaacatttcaaaggactaaattgattgatttgcagaaaatgttttggctttc 2168664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 77 - 236
Target Start/End: Complemental strand, 38614790 - 38614622
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca------- 169  Q
    |||||||||||||||||||| || ||||||| ||| ||||||| || | ||||||| ||||||||||||||||||||||| | ||| ||||||           
T  38614790 aaatgtcaatcaagttagtccttatgttcaaacggagcgttaacggggttgacgtggccgttaacctctcacatgtcagacgccacgtaggcagggacta 38614691  T
Q  170 --ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
      ||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  38614690 atttggccgataataacaaacatttcaaaggactaaattgattgatttgcagaaaatgttttggctttc 38614622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 3690206 - 3690396
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||| ||||| ||| ||||||| || |||||||||| |||||    
T  3690206 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctattcaaacggagcgttaacggggctgacgtgatcgtta 3690305  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||||||||||||||  | ||| ||||||         ||||||||||||| |||||||||| || ||| ||||||||||||||||||||    
T  3690306 acctctcacatgtcaggcgccacgtaggcagggactaatttggctgataataacaaacatttcgaaggactaaattgattgatttgcagaa 3690396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 46994716 - 46994921
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || | |||||||  |||||    
T  46994716 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacgggggtgacgtggtcgtta 46994815  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| |||| || |||||||||| || ||| |||||||||||||||||||||||||||||    
T  46994816 acctttcacatgtcagacgccacgtaggcagagactaatttggccgatagtaacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 46994915  T
Q  231 gctttc 236  Q
    ||||||    
T  46994916 gctttc 46994921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 23955322 - 23955115
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| || |||||| ||||||||||| | ||||| | ||||||||||||||||||||||| ||||||| |||  |||||| || ||||||||| | |     
T  23955322 ttaattatgtgaaatatcaatttaatctctgaatttgttaaatgtcaatcaagttagtcattatgttcaaacggaccgttaacggggctgacgtggcagc 23955223  T
Q  138 taacctctcacatgtcagatgtcacataggc---------attggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||  |||||          || || ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  23955222 taacctctcacatgtcagacgccatgtaggcggggactaatttcgccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 23955123  T
Q  229 tggctttc 236  Q
    ||||||||    
T  23955122 tggctttc 23955115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 36756910 - 36756718
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||| | |||||||||| ||| ||||||| ||  |||||||| ||||||||||||||    
T  36756910 gaaatatcaatttaatcgctgaatttgttaaatgtcaatcaagttagcccttctgttcaaacggagcgttaacgggactgacgtggccgttaacctctca 36756811  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | ||||||    
T  36756810 catgtcagacgccacatagacagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttgg 36756718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 36766434 - 36766242
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||| | |||||||||| ||| ||||||| ||  |||||||| ||||||||||||||    
T  36766434 gaaatatcaatttaatcgctgaatttgttaaatgtcaatcaagttagcccttctgttcaaacggagcgttaacgggactgacgtggccgttaacctctca 36766335  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | ||||||    
T  36766334 catgtcagacgccacatagacagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttgg 36766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 47339837 - 47339947
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||||| ||||| | ||||||||||||||||| || |||||||||| ||| | ||||| || ||||||||||| |||||||||    
T  47339837 tgcgaaatatcaatttaatctttgaatttgttaaatgtcaatcaagttaatccttctgttcaaacggagtgttaacggggctgacgtgactgttaacctc 47339936  T
Q  145 tcacatgtcag 155  Q
    |||||||||||    
T  47339937 tcacatgtcag 47339947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 30108621 - 30108750
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  30108621 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 30108720  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  30108721 acctctcacatgtcagacgccacgtaggca 30108750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 45465219 - 45465090
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  45465219 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 45465120  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  45465119 acctctcacatgtcagacgccacgtaggca 45465090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 33037787 - 33037955
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca------- 169  Q
    |||||||||||||||||||| |||||||||| ||| ||||||   | |||||||||  |||||||||||||||||||||| | ||| ||||||           
T  33037787 aaatgtcaatcaagttagtccttctgttcaaacggagcgttagcagggctgacgtggtcgttaacctctcacatgtcagacgccacgtaggcagagacta 33037886  T
Q  170 --ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
      ||||| ||||| | ||||||||||||| ||| ||| ||||||||||||| |||||||||||| ||||    
T  33037887 atttggccgataaaaacaaacatttcaaaggactaaactgattgatttgcataaaatgttttggttttc 33037955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 48 - 231
Target Start/End: Complemental strand, 36762707 - 36762515
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| |||||||| |  | ||||| | ||||||||||||||||||   |||||||||| ||| ||||||| ||  |||||||| ||||||||||||||    
T  36762707 gaaatatcaatttaacccctgaatttgttaaatgtcaatcaagttagctcttctgttcaaacggagcgttaacgggactgacgtggccgttaacctctca 36762608  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||| | ||||||    
T  36762607 catgtcagacgccacatagacagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaatttttttgg 36762515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 4321092 - 4321201
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| ||||||  || ||||| |||| ||||||||| ||||    
T  4321092 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaatggagcgttgatggggctgacgtggccgt 4321191  T
Q  138 taacctctca 147  Q
    ||||||||||    
T  4321192 taacctctca 4321201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 40785575 - 40785379
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| |||| |||||  | ||||| | |||||||||||||||||||| ||||||||||  || || |||| ||  |||||||| |||||||| |||||    
T  40785575 gaaatatcaatctaatccctgaatttgttaaatgtcaatcaagttagtctttctgttcaaatggagcattaacgggactgacgtggccgttaacatctca 40785476  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggcttt 235  Q
    ||||||||| | ||| |||| |         ||||| ||||| | ||||||||||| | ||| ||| ||||||||||| ||||||||||||||||||    
T  40785475 catgtcagacgccacgtaggtagggactaatttggccgataaaaacaaacatttcataggactaaactgattgatttgtagaaaatgttttggcttt 40785379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 8421472 - 8421586
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  8421472 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 8421571  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  8421572 acctcttacatgtca 8421586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 11685645 - 11685563
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||| ||||||||||| ||||||| ||||| |||| || | ||||| |||||||||||| ||||||||||||||||||    
T  11685645 aatttgtcatatgtcaatcaatttagtcactctgtccaattggagtgttaacggtgctgacgtggccgttaacctctcacatg 11685563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 154
Target Start/End: Original strand, 35342481 - 35342595
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || |||||||||  |||||    
T  35342481 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggtcgtta 35342580  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  35342581 acctcttacatgtca 35342595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 46810761 - 46810889
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||| | |||| ||||| | | ||||||| ||  |||| ||| ||||||    
T  46810761 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttag-ccttctattcaaacagagcgttaacgggactgatgtggccgtta 46810859  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  46810860 acctctcacatgtcagacgccacgtaggca 46810889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 34785110 - 34785022
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||||||||||| ||||||  || || |||| || | ||||| ||||||||||||  |||||||||||||||||||||||| ||||||    
T  34785110 aaatgtcaatcaatttagtccctccgtccaattggagtgttaacggtgctgacgtggtcgttaacctctcacatgtcagatgccacata 34785022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 34784132 - 34784220
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||||||||||| ||||||  || || |||| |  | ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||    
T  34784132 aaatgtcaatcaatttagtccctccgtccaattgcagtgttaacggtgctgacgtggccgttaacctctcacatgtcatatgccacata 34784220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 6058476 - 6058393
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgt 152  Q
    ||||| ||| || |||||||| |||||| ||  || || | |||||||||| |||| ||||||| |||||||||||||||||||    
T  6058476 aatttgtcatatctcaatcaaattagtccttacgtccatttggggcgttaacggtgatgacgtggccgttaacctctcacatgt 6058393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 34692707 - 34692669
Alignment:
Q  116 ttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  34692707 ttaacggtgctgacgtgaccgttaacctttcacatgtca 34692669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 25971806 - 25971847
Alignment:
Q  110 ggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    |||||||||| |||| ||||||| ||||||||||||||||||    
T  25971806 ggggcgttaacggtgatgacgtggccgttaacctctcacatg 25971847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 33111897 - 33112102
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||| ||||| ||| |||||||||| ||||||||||||||||    
T  33111897 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctattcaaacggagcgttaatggagctgacgtgaccgtta 33111996  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||| ||         ||||| ||||||| ||||||||||||| ||| ||| ||||||||||||||||||||||| |    
T  33111997 acctctcacatgtcagacgccacgtagacacggactaatttggccgataataacaaacatttcaaaggactaaactgattgatttgcagaaaatgtttcg 33112096  T
Q  231 gctttc 236  Q
    ||||||    
T  33112097 gctttc 33112102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 48635410 - 48635203
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||| ||||||||| |||||||||| ||| ||||||| || ||||||||| ||||    
T  48635410 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaattaagttagtctttctgttcaaacggagcgttaacggggctgacgtggccgt 48635311  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||  ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  48635310 taacctctcacatgtcagacgccatgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 48635211  T
Q  229 tggctttc 236  Q
    || |||||    
T  48635210 tgactttc 48635203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 45897106 - 45897311
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||  |||||||||| ||| |||||||    ||||||||| ||||||    
T  45897106 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagttcttctgttcaaacggagcgttaacaaggctgacgtggccgtta 45897205  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| |  || ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  45897206 acctctcacatgtcagacgcaacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 45897305  T
Q  231 gctttc 236  Q
    ||||||    
T  45897306 gctttc 45897311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 33851045 - 33851153
Alignment:
Q  47 cgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctc 146  Q
    ||||||| ||||||||||| | ||||| | ||||||||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||||    
T  33851045 cgaaatatcaatttaatctctgaatttgttaaatgtcaatcaagttagtcattctgttcaaacggagcgttaacggggctgacgtgaccgttaacctctc 33851144  T
Q  147 acatgtcag 155  Q
    |||||||||    
T  33851145 acatgtcag 33851153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 23775673 - 23775489
Alignment:
Q  55 caatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| | | |||||||||| |||||| ||||||||||||||||| ||||||    
T  23775673 caatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacagagcgttaatggggctgacttgaccgttaacctctcatatgtca 23775574  T
Q  155 gatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    || | ||| ||||||         |||| |||||||| |||||||||| || ||| ||||| |||||||||||||||||||||||    
T  23775573 gacgccacgtaggcagggactaatttggttgataataacaaacatttcgaaggactaaattcattgatttgcagaaaatgttttg 23775489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 243
Target Start/End: Original strand, 2975521 - 2975728
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||  | ||||| | |||| ||||||||||||||| |||||||| | ||   |||||| |||| ||||||| |||||||||||    
T  2975521 tgcgaaatatcaatttaatccctgaatttgttaaatttcaatcaagttagtccttctgttcgaccgaaacgttaacggtgttgacgtggccgttaacctc 2975620  T
Q  145 tcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggcttt 235  Q
    ||||||||||||  |||| ||||||         ||||  ||||||  ||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  2975621 tcacatgtcagacatcacgtaggcagggattaatttggtcgataatgacaaacatttcaaaggaccaaattgattgatttccagaaattgttttggcttt 2975720  T
Q  236 catctcac 243  Q
    | ||||||    
T  2975721 cttctcac 2975728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 23887254 - 23887459
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| |  ||||||||||||||||||| |||||||||| ||| ||||||| || ||||||||| ||||||    
T  23887254 aattatgcgaaatatcaatttaatccctgaatttgttcaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctgacgtggccgtta 23887353  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||| | |||||||  || |||||| || ||| ||||||||||||||||||||||| |||||    
T  23887354 acctttcacatgtcagacgccacgtaggcagggactaatttgaccgataataaaaatcatttcgaaggactaaattgattgatttgcagaaaatattttg 23887453  T
Q  231 gctttc 236  Q
    ||||||    
T  23887454 gctttc 23887459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 1847680 - 1847475
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || | ||| ||| ||||||    
T  1847680 aattatgcaaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggatgatgtggccgtta 1847581  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    || |||||||||||||| ||||   |||||         ||||  ||||||| ||||||||||||| |||||| ||||||||||||||||||||||  ||    
T  1847580 acttctcacatgtcagacgtcatgcaggcatggactaatttggtcgataataacaaacatttcaaaggaccaatttgattgatttgcagaaaatgtggtg 1847481  T
Q  231 gctttc 236  Q
    ||||||    
T  1847480 gctttc 1847475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 37865440 - 37865569
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  37865440 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtctttcagttcaaacggagcgttaacggggctgacgtggccgtta 37865539  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  37865540 acctctcacatgtcagacgccacgtaggca 37865569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 40508547 - 40508744
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||  ||||||||||  | ||||| | |||||||||||||||||||| |||| ||||| | | ||||||| || ||||||||| ||||    
T  40508547 ttaattatgcgaaatctcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctattcaaacagagcgttaacggggctgacgtggccgt 40508646  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgt 226  Q
    ||||||||||||||||||| | |||  |||||         ||||  ||||||| |||||||||| || ||| ||||||||||||||| |||||||||    
T  40508647 taacctctcacatgtcagacgccacgcaggcagggactaatttggtcgataataacaaacatttcgaaggactaaattgattgatttgtagaaaatgt 40508744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 18428805 - 18428918
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaat-cggggcgttaatggtgctgacgtgaccgtt 138  Q
    |||| ||||||||| |||||||||||  || ||| | |||||||||||||||||||||||  ||||||  ||| ||||||| || |||||||||||||||    
T  18428805 aattatgcgaaatatcaatttaatctcgaa-tttgttaaatgtcaatcaagttagtcatt--gttcaaaacggagcgttaacggggctgacgtgaccgtt 18428901  T
Q  139 aacctctcacatgtcag 155  Q
    |||||||||||||||||    
T  18428902 aacctctcacatgtcag 18428918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 51453878 - 51453958
Alignment:
Q  59 ttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||||| |||||||| | |||| ||||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||    
T  51453878 ttaatccttaaatttgttaaatctcaatcaagttagtccttctgttcaaacggagcgttaacggtgctgacgtgaccgtta 51453958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 31885572 - 31885778
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||| |  || |||||   |||||||||||||||||||| || ||||||| | | ||||||| || || |||||| || |    
T  31885572 ttaattatgcgaaatatcaatttagtacttgaatttgctaaatgtcaatcaagttagtcctt-tgttcaaacagagcgttaacggggccgacgtggccat 31885670  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||| ||||||| | ||| ||||||         || |||||||||| |||| ||||||||  || |||||||||| ||||||||| ||||||    
T  31885671 taacctctcacgtgtcagacgccacgtaggcaatgactaattttgctgataataacaaatatttcaaagaactaaattgattgctttgcagaacatgttt 31885770  T
Q  229 tggctttc 236  Q
    || |||||    
T  31885771 tgactttc 31885778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 45255576 - 45255654
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcag 155  Q
    |||||||||||||||||||| |||||||||| ||  ||||||| || ||| ||||  ||||||||||||||||||||||    
T  45255576 aaatgtcaatcaagttagtccttctgttcaaacgaagcgttaacggggctaacgtagccgttaacctctcacatgtcag 45255654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 227
Target Start/End: Original strand, 30501210 - 30501369
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca------- 169  Q
    ||||||||||||| ||||||  || || |||| || | ||||| ||||||||||||||||| || ||||||||||||||||| |||| | |||           
T  30501210 aaatgtcaatcaatttagtccctccgtccaattggagtgttaacggtgctgacgtgaccgtcaatctctcacatgtcagatgccacacaagcaaagacta 30501309  T
Q  170 --ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
      |||||||||| |  | || ||||| || ||| ||||||||||||||||||||||||||    
T  30501310 atttggctgatagtgaccaaaatttccaaggacgaaattgattgatttgcagaaaatgtt 30501369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 24381800 - 24381917
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaat-ttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggt-gctgacgtgaccgt 137  Q
    |||| ||||||||| ||||||||||||| ||| || | |||| |||| |||||||||| |||||||||| ||| ||||||| ||  |||||||||  |||    
T  24381800 aattatgcgaaatatcaatttaatctttgaatatttttaaatttcaa-caagttagtccttctgttcaaacggagcgttaacggacgctgacgtggtcgt 24381898  T
Q  138 taacctctcacatgtcaga 156  Q
    || ||||||||||||||||    
T  24381899 tagcctctcacatgtcaga 24381917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 40998611 - 40998761
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------t 170  Q
    |||||||||| |||||| ||||| |||| |||| | |||| || ||||||||| |||||||||||| |||||||| | | ||| ||||||         |    
T  40998611 tgtcaatcaatttagtccttctggtcaaacgggccattaacggggctgacgtggccgttaacctcttacatgtcatacgccacgtaggcagggactaatt 40998710  T
Q  171 tggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  40998711 tggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 40998761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 5127453 - 5127371
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||| || |||||||| |||||| ||  || || | |||||||||| |||| ||||||| ||||||||||||||||||    
T  5127453 aatttgtcatatctcaatcaaattagtccttacgtccatttggggcgttaacggtgatgacgtggccgttaacctctcacatg 5127371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 5134667 - 5134626
Alignment:
Q  110 ggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    |||||||||| |||| ||||||| ||||||||||||||||||    
T  5134667 ggggcgttaacggtgatgacgtggccgttaacctctcacatg 5134626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 18428951 - 18428988
Alignment:
Q  185 aaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  18428951 aaacatttcgaatgactaaattgattgatttgcagaaa 18428988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 26447847 - 26447924
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtca 154  Q
    ||||||||||||| ||||||  ||  |||||| || | ||||||||||||||||||   |||||||| ||||||||||    
T  26447847 aaatgtcaatcaatttagtctctccattcaattggagtgttaatggtgctgacgtggttgttaacctttcacatgtca 26447924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 26447942 - 26447999
Alignment:
Q  170 ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
    |||||||||| || | || ||||| || ||| ||||||||||||||||||||||||||    
T  26447942 ttggctgatagtaaccaaaatttccaaggacgaaattgattgatttgcagaaaatgtt 26447999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 7589502 - 7589538
Alignment:
Q  189 atttcaaatgaccaaattgattgatttgcagaaaatg 225  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  7589502 atttccaatgacaaaattgattgatttgcagaaaatg 7589538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 40330550 - 40330345
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||| ||||||||||||| |||||||||| ||| ||||||| |||||||||||| |||| |    
T  40330550 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtgaatcaagttagtccttctgttcaaacggagcgttaacggtgctgacgtggccgtca 40330451  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||| ||||    
T  40330450 acctctcacatgtcagacgccacgtaggcagagactaatttggccgataataaaaaacatttcaaaggactaaattgattgatttgcagaaaatgctttg 40330351  T
Q  231 gctttc 236  Q
    ||||||    
T  40330350 gctttc 40330345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 38176686 - 38176893
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||| |||||||||||| || |||||||||| ||| | ||||| || ||||||||||||||    
T  38176686 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatatcaatcaagttactccttctgttcaaacggagtgttaacggggctgacgtgaccgt 38176785  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  38176786 taacctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 38176885  T
Q  229 tggctttc 236  Q
    || |||||    
T  38176886 tgactttc 38176893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 38203910 - 38204117
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||| |||||||||||| || |||||||||| ||| | ||||| || ||||||||||||||    
T  38203910 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatatcaatcaagttactccttctgttcaaacggagtgttaacggggctgacgtgaccgt 38204009  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  38204010 taacctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttt 38204109  T
Q  229 tggctttc 236  Q
    || |||||    
T  38204110 tgactttc 38204117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 33257797 - 33257590
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| |||||||    ||||||||| ||||    
T  33257797 ttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacaaggctgacgtggccgt 33257698  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||| ||||||||| |  || ||||||         ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||    
T  33257697 taacctctcgcatgtcagacgctacgtaggcagggactaatttggccgataataacaaacatttctaaggactaaattgattgatttgcagaaaatgttt 33257598  T
Q  229 tggctttc 236  Q
    ||||||||    
T  33257597 tggctttc 33257590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 32089960 - 32089755
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| || ||||||| ||| ||||||| || ||||||| | ||||||    
T  32089960 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttatgttcaaacggagcgttaacggggctgacgcggccgtta 32089861  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||||||  || ||| ||||||||||||||| |||||||||||||    
T  32089860 acctctcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgtagaaaatgttttg 32089761  T
Q  231 gctttc 236  Q
    ||||||    
T  32089760 gctttc 32089755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 32835930 - 32836130
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  | ||||||| |||||||||||||||||||| ||| |||||| | |  |||||| || ||||||||| ||||    
T  32835930 ttaattatgcgaaatatcaatttaatccctgaatttattaaatgtcaatcaagttagtccttcggttcaaacagaacgttaacggggctgacgtggccgt 32836029  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||||||| |||||| ||| || ||| |||||||||||||||||||||||||||    
T  32836030 taacctctcacatgtcagacgccacgtaggcatggactaatttggccgataataacaaacacttcgaaggactaaattgattgatttgcagaaaatgttt 32836129  T
Q  229 t 229  Q
    |    
T  32836130 t 32836130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 45 - 236
Target Start/End: Original strand, 43316841 - 43317041
Alignment:
Q  45 tgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctc 144  Q
    ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || |||||||||||||||||||||    
T  43316841 tgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggagctgacgtgaccgttaacctc 43316940  T
Q  145 tcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggcttt 235  Q
    |||||||||||| | ||||||  ||         ||||| ||||||| |||||||||  || ||| ||| ||||||||||||||||||| ||| ||||||    
T  43316941 tcacatgtcagacgccacataaacagggactaatttggccgataataacaaacattttgaaggactaaactgattgatttgcagaaaatatttcggcttt 43317040  T
Q  236 c 236  Q
    |    
T  43317041 c 43317041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 35291112 - 35291309
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||||| ||||||||||  || ||||||| || ||||||||| ||||||||||||||    
T  35291112 gaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaatggagcgttaacggagctgacgtggccgttaacctctca 35291211  T
Q  148 catgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||||||||| | ||||||| ||         ||||| ||||||| |||||||||  || ||| ||| ||||||||||||||||||||||| |||||||    
T  35291212 catgtcagacgacacatagacagggactaatttggccgataataacaaacattttgaaggactaaactgattgatttgcagaaaatgtttcggctttc 35291309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 18726621 - 18726823
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||| ||  | ||||| | ||||||||||||||||||||   |||||||| ||| ||||||| || ||||||||| ||||||    
T  18726621 aattatgcgaaatatcaatttagtcccttaatttgttaaatgtcaatcaagttagtc---ctgttcaaacggagcgttaacggggctgacgtggccgtta 18726717  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| | ||| ||||||         ||  | ||||||| |||||||||  || ||| ||||||||||||||||| |||||||||||    
T  18726718 acctctcacatgtcagacgccacgtaggcagggactaatttaaccgataataacaaacattttgaaggactaaattgattgatttgcataaaatgttttg 18726817  T
Q  231 gctttc 236  Q
    ||||||    
T  18726818 gctttc 18726823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 42619345 - 42619474
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||    ||||| | |||||||||||||||||||| ||| |||||| ||| |  |||| || ||| ||||| ||||||    
T  42619345 aattatgcgaaatatcaatttaatcccagaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagtattaacggggctaacgtggccgtta 42619444  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  42619445 acctctcacatgtcagacgccacgtaggca 42619474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 156
Target Start/End: Original strand, 24232216 - 24232324
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctca 147  Q
    |||||| |||| |||| | | ||||| | |||||||||||||||||||  |||||||||| |   || |||| || | ||||||| ||||||||||||||    
T  24232216 gaaatatcaatctaatttctgaatttgttaaatgtcaatcaagttagtacttctgttcaaacaaagcattaacggggttgacgtggccgttaacctctca 24232315  T
Q  148 catgtcaga 156  Q
    |||||||||    
T  24232316 catgtcaga 24232324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 1344761 - 1344724
Alignment:
Q  128 acgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  1344761 acgtggccgttaacctctcacatgtcagatgccacata 1344724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 24497928 - 24497896
Alignment:
Q  198 gaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||||||| |||||||||||    
T  24497928 gaccaaattgattgatttgcataaaatgttttg 24497896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 31803735 - 31803530
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || ||||||||| ||||||    
T  31803735 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctgacgtggccgtta 31803636  T
Q  140 acctctcacatgtcagatgtcacataggc---------attggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| |||||          ||||| ||||||| |||||||||| || ||| |||||||||||||||||||||||||||||    
T  31803635 acctttcacatgtcagacgccacgtaggcggggactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgttttg 31803536  T
Q  231 gctttc 236  Q
    ||||||    
T  31803535 gctttc 31803530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 46636821 - 46637026
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||| | | ||||| | |||||||||||||||||||| |||||||||| ||| ||||||| || ||||||||| ||||||    
T  46636821 aattatgcgaaatatcaatttaatttctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacggggctgacgtggccgtta 46636920  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    |||| |||||||||||| | ||| ||||||         ||||| ||||||| |||||||||  || ||| |||||||||||||||||||||||||||||    
T  46636921 acctttcacatgtcagacgccacgtaggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgcagaaaatgttttg 46637020  T
Q  231 gctttc 236  Q
    ||||||    
T  46637021 gctttc 46637026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 44159331 - 44159139
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||| ||||| |||||||||   | ||||| | ||||||||||||||||||||||||||||||| ||  ||||||| || ||||||||||||||    
T  44159331 ttaattatgcaaaatatcaatttaattcctgaatttgttaaatgtcaatcaagttagtcattctgttcaaacgaagcgttaacggggctgacgtgaccgt 44159232  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||||||||||||||||  | ||| ||||||         ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||    
T  44159231 taacctctcacatgtcaggcgccacgtaggcaatgactaatttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaa 44159139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 40 - 221
Target Start/End: Complemental strand, 6577140 - 6576950
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||||  |||||||||||||||||| | |||||||||| ||| |||||||||| ||||||||| ||||||    
T  6577140 aattatgcgaaatatcaatttaatccctgaatttactaaatgtcaatcaagttagcccttctgttcaaacggagcgttaatggggctgacgtggccgtta 6577041  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    | ||||||||||||||| | ||| ||||||         ||||| |||||||  |||||||||||| ||| ||||| ||||||||||||||    
T  6577040 atctctcacatgtcagacgccacgtaggcagggactaatttggccgataataataaacatttcaaaggactaaattaattgatttgcagaa 6576950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 231
Target Start/End: Complemental strand, 42136282 - 42136079
Alignment:
Q  37 tttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccg 136  Q
    ||||||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| |||||||||| ||| |||||||  | |||||||||  ||    
T  42136282 tttaattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcgttaacagggctgacgtggtcg 42136183  T
Q  137 ttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
    ||| ||||||||||| |||| | ||| ||||||         ||| ||||||||| |||||||||| || ||| ||||||||||||||||||||| | ||    
T  42136182 ttatcctctcacatggcagacgccacgtaggcagagactaatttgactgataataacaaacatttcgaaggactaaattgattgatttgcagaaattttt 42136083  T
Q  228 ttgg 231  Q
    ||||    
T  42136082 ttgg 42136079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 5784902 - 5784786
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||||||||||    
T  5784902 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtgaccgtta 5784803  T
Q  140 acctctcacatgtcaga 156  Q
    | |||||||||||||||    
T  5784802 aactctcacatgtcaga 5784786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 33679315 - 33679506
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||| ||||| ||| |||||||    | ||||||| ||||||    
T  33679315 aattatgcgaaatatcaatttaatccttgaatttgttaaatgtcaatcaagttagtccttctattcaaacggagcgttaacaaggttgacgtggccgtta 33679414  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    ||||||||||||||||| | ||| ||||||         ||| | ||||||| |||||||||| || ||| |||||||||||||||||||||    
T  33679415 acctctcacatgtcagacgccacgtaggcagggactaatttgaccgataataacaaacatttcgaaggactaaattgattgatttgcagaaa 33679506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 45379139 - 45379256
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  ||||||| | |||||||||||||||||||| |||||||||| ||| || |||| || | ||||||| ||||    
T  45379139 ttaattatgcgaaatatcaatttaatccctaaatttgttaaatgtcaatcaagttagtccttctgttcaaacggagcattaacggggttgacgtggccgt 45379238  T
Q  138 taacctctcacatgtcag 155  Q
    ||||||||||||| ||||    
T  45379239 taacctctcacatatcag 45379256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 35478143 - 35478259
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||  | ||||||| |||||||||||||||||| | |||||||||| | | ||||||| || ||| ||||||||||||    
T  35478143 aattatgcaaaatatcaatttaatccctgaatttattaaatgtcaatcaagttagcccttctgttcaaacagagcgttaacggggctaacgtgaccgtta 35478242  T
Q  140 acctctcacatgtcaga 156  Q
    |||||||||||||||||    
T  35478243 acctctcacatgtcaga 35478259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 25172995 - 25172945
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 165  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25172995 gttaacggtgctgacgtgaccgttaacctctcacatgtcagatgtcacata 25172945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 27952535 - 27952422
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  27952535 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 27952436  T
Q  140 acctctcacatgtc 153  Q
    |||||| |||||||    
T  27952435 acctcttacatgtc 27952422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 47264220 - 47264370
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------t 170  Q
    |||||||||| |||||| ||||| |||| ||||  ||||| |||||||||||| |||||||||||| |||||||| | | ||| ||||||         |    
T  47264220 tgtcaatcaatttagtccttctggtcaaacgggctgttaacggtgctgacgtggccgttaacctcttacatgtcatacgccacgtaggcagggactaatt 47264319  T
Q  171 tggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  47264320 tggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 47264370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 11152601 - 11152730
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||    ||||| | |||||||||||||||||||| ||| |||||| ||| |  |||| |  ||| ||||| ||||||    
T  11152601 aattatgcgaaatatcaatttaatcccagaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagtattaacgaggctaacgtggccgtta 11152700  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  11152701 acctctcacatgtcagacgccacgtaggca 11152730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 18180674 - 18180740
Alignment:
Q  170 ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||||| ||||||| ||||||||||||| ||| ||| ||||| ||||||| ||||||||| |||||||    
T  18180674 ttggccgataataacaaacatttcaaaggactaaactgattaatttgcaaaaaatgtttcggctttc 18180740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 18180556 - 18180635
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaa 119  Q
    |||| ||||||||| |||||||||   | ||||| | |||||||||||||| ||||| |||||||||| ||| |||||||    
T  18180556 aattatgcgaaatatcaatttaattcctgaatttgttaaatgtcaatcaaggtagtccttctgttcaaacggagcgttaa 18180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 35478282 - 35478333
Alignment:
Q  170 ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    ||||| ||||||| |||||||||| || ||| ||||||||||||||||||||    
T  35478282 ttggccgataataacaaacatttcgaaggactaaattgattgatttgcagaa 35478333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 43870320 - 43870238
Alignment:
Q  69 aatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatg 151  Q
    ||||| ||| || |||||||| |||||| ||  || || | |||||||||| |||| ||||||| ||||||||||||||||||    
T  43870320 aatttgtcatatctcaatcaaattagtccttacgtccatttggggcgttaacggtgatgacgtggccgttaacctctcacatg 43870238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 42003525 - 42003325
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||| | ||||| | ||||||||||||||||||||||||||||||  ||| |||||||  | ||||||||||||||||    
T  42003525 aattatgcgaaatatcaatttaatctctgaatttgttaaatgtcaatcaagttagtcattctgttcacacggagcgttaacagggctgacgtgaccgtta 42003426  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttg 230  Q
    ||||||||||||||||| |  || ||||||         ||||| || |||| |||||||||| |||||| ||||||||||||||||||||| | |||||    
T  42003425 acctctcacatgtcagacgctacgtaggcatggactaatttggccgaaaataacaaacatttcgaatgactaaattgattgatttgcagaaatttttttg 42003326  T
Q  231 g 231  Q
    |    
T  42003325 g 42003325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 236
Target Start/End: Complemental strand, 37418807 - 37418599
Alignment:
Q  37 tttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccg 136  Q
    ||||||| ||| ||||| |||| |||||  ||||||| | ||||||||||||||||||||||||||||||| | | ||||||| |  |||||| || |||    
T  37418807 tttaattatgcaaaatatcaatctaatccctaaatttgttaaatgtcaatcaagttagtcattctgttcaaacagagcgttaacgtggctgacatggccg 37418708  T
Q  137 ttaacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgtt 227  Q
    |||||||||||||||||||| | ||  ||||||         ||||  ||||||| |||||||||| || ||| ||||||||||||||||||||||||||    
T  37418707 ttaacctctcacatgtcagacggcatgtaggcagggactaatttggtcgataataacaaacatttcgaaggactaaattgattgatttgcagaaaatgtt 37418608  T
Q  228 ttggctttc 236  Q
    ||| |||||    
T  37418607 ttgactttc 37418599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 42880848 - 42880641
Alignment:
Q  38 ttaattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgt 137  Q
    |||||| ||||||||| ||||||||||  ||||||| | |||| ||||||||||||||| || ||||||| ||| ||||||| |  ||||| ||| ||||    
T  42880848 ttaattatgcgaaatatcaatttaatccataaatttgttaaatttcaatcaagttagtccttttgttcaaacggagcgttaacgaggctgatgtggccgt 42880749  T
Q  138 taacctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttt 228  Q
    ||||||||||||||||||| | ||| ||||||         ||||| ||| ||| |||||||||  |  ||| ||||||||||||||| |||||||||||    
T  42880748 taacctctcacatgtcagacgccacgtaggcagggactaatttggccgatgataacaaacattttgacggactaaattgattgatttgtagaaaatgttt 42880649  T
Q  229 tggctttc 236  Q
    || |||||    
T  42880648 tgactttc 42880641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 28248210 - 28248081
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||| ||||| ||||||  || ||||||| || ||||||||| ||||||    
T  28248210 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttaggcattcagttcaaatggagcgttaacggggctgacgtggccgtta 28248111  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||| | ||| ||||||    
T  28248110 acctctcacatgtcagacgccacgtaggca 28248081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 11021589 - 11021705
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | |||||||||||||||||||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  11021589 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 11021688  T
Q  140 acctctcacatgtcaga 156  Q
    | |||||||||||||||    
T  11021689 aactctcacatgtcaga 11021705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 41708465 - 41708351
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  41708465 aattatgcgaaatatcaatttaatccctgaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 41708366  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  41708365 acctcttacatgtca 41708351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 41177 - 40978
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||||| || |||||||||| |||||| ||||||| ||  ||| |||||| || ||||||||| ||||||    
T  41177 aattatgcgaaatatcaatttaatccctgaatttattaattgtcaatcaatttagtccttctgttgaaatgggccgttaacggggctgacgtggccgtta 41078  T
Q  140 acctctcacatgtcagatgtcacat---aggca-----ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttgg 231  Q
    |||||| ||| |||| | ||||| |   ||| |     ||||| ||||||| |||||||||  || ||| ||||||||||||||||||||| | ||||||    
T  41077 acctcttacaagtcatacgtcacgtggcagggactaatttggccgataataacaaacattttgaaggactaaattgattgatttgcagaaatttttttgg 40978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Original strand, 33257 - 33352
Alignment:
Q  48 gaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacct 143  Q
    |||||| ||||||||||  | ||||| | |||||||||||||||||||| || ||||||| ||| ||||||| || ||||||||| ||||||||||    
T  33257 gaaatatcaatttaatccctgaatttgttaaatgtcaatcaagttagtccttttgttcaaacggagcgttaacggggctgacgtggccgttaacct 33352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 35499 - 35559
Alignment:
Q  176 gataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    |||||||  ||||||||| || ||| ||||||||||||||||||||||| |||||||||||    
T  35499 gataataataaacatttcgaaggactaaattgattgatttgcagaaaatattttggctttc 35559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 15373923 - 15373732
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| |||||||||   | ||||| | || |||||||||| |||||| ||||| |||| | || |||||| |  |||| |||| ||||||    
T  15373923 aattatgcgaaatatcaatttaattcctgaatttgttaattgtcaatcaatttagtccttctggtcaaacaggccgttaacgaggctggcgtggccgtta 15373824  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    |||||| |||||||| | | ||| ||||||         ||||||||||||  |||||||||  || ||| |||||||||||||||||||||    
T  15373823 acctcttacatgtcatacgccacgtaggcagggactaatttggctgataattccaaacattttgaaggactaaattgattgatttgcagaaa 15373732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 38149975 - 38149928
Alignment:
Q  115 gttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcac 162  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  38149975 gttaacggtgctgacgtggtcgttaacctctcacatgtcagatgtcac 38149928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 11312944 - 11313036
Alignment:
Q  77 aaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||| ||||||  || || |||| || | ||||| | ||||||| |   ||||||||||||||||||| |||||||||||||||    
T  11312944 aaatgtcaatcaatttagtccctccgtccaattggagtgttaacgatgctgacatagtcgttaacctctcacatgtctgatgtcacataggca 11313036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 57498 - 57658
Alignment:
Q  81 gtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------tt 171  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||    |||||| ||| | ||||||||||         ||    
T  57498 gtcaatcaagttagtctttctgttcaatcggggcgttaacggtgctgacgtggtcgttaacc----acatgttagacgccacataggcagagactaattt 57593  T
Q  172 ggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaaatgttttggctttc 236  Q
    ||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||||    
T  57594 ggccgataataacaaacatttcaaataaccaaattgattgatttgtagaaaatgttttgactttc 57658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 17950617 - 17950746
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  | ||||| | ||||||||||||||| |||| ||| |||||| ||| ||||||| || ||||||||| ||||||    
T  17950617 aattatgcgaaatatcaatttaatccctgaatttgttaaatgtcaatcaagtcagtccttcagttcaaacggagcgttaacggggctgacgtggccgtta 17950716  T
Q  140 acctctcacatgtcagatgtcacataggca 169  Q
    ||||||||||||||||||| ||| ||||||    
T  17950717 acctctcacatgtcagatgccacgtaggca 17950746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 30639667 - 30639858
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||| ||||| ||||||||||| | ||||| | ||||||||||||| |||| | || ||||||| ||| || |||| || ||||||||| ||||||    
T  30639667 aattatgcaaaatatcaatttaatctatgaatttgttaaatgtcaatcaacttagcccttatgttcaaacggagcattaacggggctgacgtggccgtta 30639766  T
Q  140 acctctcacatgtcagatgtcacataggca---------ttggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaaa 222  Q
    ||||||||||||||| | | ||| ||||||         ||||| ||||||| |||||||||| |||||| |||||||||||||||||||||    
T  30639767 acctctcacatgtcaaacgccacgtaggcagggagtaatttggccgataataacaaacatttcgaatgactaaattgattgatttgcagaaa 30639858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 4646251 - 4646137
Alignment:
Q  40 aattgtgcgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgtta 139  Q
    |||| ||||||||| ||||||||||  ||||||| | || |||||||||| |||||| ||||| |||| |||| |||||| || ||||||||| ||||||    
T  4646251 aattatgcgaaatatcaatttaatccctaaatttgttaattgtcaatcaatttagtccttctggtcaaacgggccgttaacggggctgacgtggccgtta 4646152  T
Q  140 acctctcacatgtca 154  Q
    |||||| ||||||||    
T  4646151 acctcttacatgtca 4646137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 29114771 - 29114621
Alignment:
Q  80 tgtcaatcaagttagtcattctgttcaatcggggcgttaatggtgctgacgtgaccgttaacctctcacatgtcagatgtcacataggca---------t 170  Q
    |||||||||| |||||| ||||| |||| |||| | |||| || ||||||||| |||||||||||| |||||||| | | ||| ||||||         |    
T  29114771 tgtcaatcaatttagtccttctggtcaaacgggccattaacggggctgacgtggccgttaacctcttacatgtcatacgccacgtaggcagggactaatt 29114672  T
Q  171 tggctgataatagcaaacatttcaaatgaccaaattgattgatttgcagaa 221  Q
    |||||||||||  |||||||||  || ||| ||||||||||||||||||||    
T  29114671 tggctgataattccaaacattttgaaggactaaattgattgatttgcagaa 29114621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 35174454 - 35174526
Alignment:
Q  47 cgaaataacaatttaatctttaaatttatcaaatgtcaatcaagttagtcattctgttcaatcggggcgttaa 119  Q
    ||||||| ||||||||| | | ||||| | |||||||||||||||||||| ||| |||||| ||| |||||||    
T  35174454 cgaaatatcaatttaatttctgaatttgttaaatgtcaatcaagttagtccttcagttcaaacggagcgttaa 35174526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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