View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_high_50 (Length: 210)

Name: NF17199_high_50
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_high_50
NF17199_high_50
[»] chr3 (15 HSPs)
chr3 (1-210)||(2409939-2410148)
chr3 (22-116)||(52925714-52925807)
chr3 (25-121)||(3845210-3845305)
chr3 (79-123)||(21513425-21513469)
chr3 (24-99)||(3776430-3776504)
chr3 (44-123)||(4096393-4096472)
chr3 (24-119)||(39256566-39256660)
chr3 (84-123)||(41115458-41115497)
chr3 (77-123)||(33548186-33548232)
chr3 (85-123)||(35132368-35132406)
chr3 (78-123)||(43987648-43987693)
chr3 (28-61)||(48089854-48089887)
chr3 (23-76)||(51965623-51965676)
chr3 (22-102)||(25129638-25129718)
chr3 (77-121)||(54596761-54596805)
[»] scaffold0393 (2 HSPs)
scaffold0393 (1-123)||(12403-12525)
scaffold0393 (122-210)||(12253-12341)
[»] chr6 (7 HSPs)
chr6 (24-123)||(29240548-29240646)
chr6 (22-123)||(6544595-6544695)
chr6 (23-123)||(33136579-33136677)
chr6 (40-99)||(34620793-34620851)
chr6 (40-99)||(34748230-34748288)
chr6 (77-121)||(25196026-25196070)
chr6 (79-123)||(26550464-26550508)
[»] chr7 (6 HSPs)
chr7 (29-123)||(48290287-48290380)
chr7 (84-123)||(45369112-45369151)
chr7 (25-123)||(12306626-12306723)
chr7 (21-58)||(33504562-33504599)
chr7 (24-123)||(15050184-15050281)
chr7 (22-62)||(27624939-27624979)
[»] chr5 (13 HSPs)
chr5 (22-123)||(29922783-29922883)
chr5 (77-123)||(38045392-38045438)
chr5 (30-123)||(10898619-10898711)
chr5 (25-95)||(2938016-2938086)
chr5 (79-123)||(1105384-1105428)
chr5 (26-121)||(10859919-10860013)
chr5 (79-118)||(12208944-12208983)
chr5 (28-98)||(6622174-6622243)
chr5 (22-123)||(11911905-11912005)
chr5 (24-123)||(2973352-2973454)
chr5 (79-123)||(17862468-17862512)
chr5 (83-123)||(29922575-29922615)
chr5 (128-156)||(35139024-35139052)
[»] chr1 (11 HSPs)
chr1 (28-125)||(32088667-32088763)
chr1 (28-123)||(18325187-18325281)
chr1 (24-123)||(48635287-48635386)
chr1 (77-123)||(15452429-15452475)
chr1 (26-123)||(6021695-6021793)
chr1 (25-112)||(15478108-15478194)
chr1 (114-153)||(31375227-31375266)
chr1 (41-99)||(8381892-8381949)
chr1 (29-123)||(41516883-41516976)
chr1 (24-122)||(49079311-49079408)
chr1 (79-123)||(51158510-51158554)
[»] chr8 (10 HSPs)
chr8 (24-123)||(41614735-41614833)
chr8 (23-99)||(39648265-39648340)
chr8 (79-118)||(13929808-13929847)
chr8 (24-98)||(30251629-30251702)
chr8 (25-107)||(36448006-36448087)
chr8 (22-123)||(40880986-40881088)
chr8 (86-123)||(36447966-36448003)
chr8 (27-107)||(11038076-11038155)
chr8 (79-123)||(34469247-34469291)
chr8 (79-123)||(41138847-41138891)
[»] chr2 (11 HSPs)
chr2 (24-123)||(41037049-41037147)
chr2 (25-123)||(37561599-37561695)
chr2 (22-99)||(7629751-7629827)
chr2 (24-121)||(15220933-15221029)
chr2 (84-124)||(39702527-39702567)
chr2 (26-101)||(43717235-43717309)
chr2 (114-203)||(38129420-38129509)
chr2 (28-121)||(9943318-9943410)
chr2 (25-61)||(4778445-4778481)
chr2 (79-123)||(7630361-7630405)
chr2 (53-97)||(14577907-14577950)
[»] chr4 (10 HSPs)
chr4 (24-99)||(50375572-50375644)
chr4 (24-123)||(2635054-2635152)
chr4 (28-123)||(41058821-41058915)
chr4 (21-115)||(29468736-29468829)
chr4 (28-82)||(37339309-37339363)
chr4 (24-74)||(47596440-47596490)
chr4 (79-119)||(2171732-2171772)
chr4 (79-123)||(9082918-9082962)
chr4 (79-123)||(22250171-22250215)
chr4 (79-123)||(25318992-25319036)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 2410148 - 2409939
Alignment:
Q  1 aatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410148 aatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggtggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgga 2410049  T
Q  101 tgttctcaagtagaattgattttccgcctcaaatttattgttcaactcactttcatcagaatcaaattttatacaattaatccattcaaaatcatttttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2410048 tgttctcaagtagaattgattttccgcctcaaatttattgttcaactcactttcatcagaatcaaattttatacaatcaatccattcaaaatcatttttt 2409949  T
Q  201 gtctcacaaa 210  Q
    ||||||||||    
T  2409948 gtctcacaaa 2409939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 52925807 - 52925714
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaat 116  Q
    |||||||||||| | || ||||||||||||||||||||||| ||||| |||||| | |||| |||||||||||||||| || ||||| |||||||    
T  52925807 ttagtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgt-ataattgattttgacatgtttggttgctctcacgtagaat 52925714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 3845305 - 3845210
Alignment:
Q  25 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    ||||||||||| || ||||||||||| |  |||||||| ||||| ||||||| || || |||||||||||||||  || ||||||||||||||||||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaa-ttgattttgacatgtttgtttgatctcaagtagaattgatt 3845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 21513469 - 21513425
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||||    
T  21513469 aattgattttaacatgcttggatgttctcaagtagaattgatttt 21513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 3776430 - 3776504
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 99  Q
    ||||||| |||| || |||||||||||||| |||||||| || || |||||| | |||| ||||||||||||||||    
T  3776430 agtgtatatttggttccacttttggaggagacaaaattggttatagaggtgt-agaattgattttgacatgtttgg 3776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 4096472 - 4096393
Alignment:
Q  44 tttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||| ||||||||||| || | ||  |||||| ||||||||||| |||||| | |||| | ||||||||||||||||    
T  4096472 tttggagcagtcaaaattgattttgaaaatgtaaatatttattttgatatgtttagttgtttttaagtagaattgatttt 4096393  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 39256566 - 39256660
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattga 119  Q
    ||||| |||||| || ||||||||||| | ||||||||  ||||| |||||| | |||| |||||||||||||||  |  ||||||||||||||||    
T  39256566 agtgtgtgtttggttccacttttggagaaatcaaaattagttctagaggtgt-agaattgattttgacatgtttgattactctcaagtagaattga 39256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 41115497 - 41115458
Alignment:
Q  84 attttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  41115497 attttgacatgtttggatgttttaaagtagaattgatttt 41115458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 33548186 - 33548232
Alignment:
Q  77 aaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||| ||||||||||||||||||| | | ||||||||||||||||    
T  33548186 aaaattgattttgacatgtttggatgctattaagtagaattgatttt 33548232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 35132406 - 35132368
Alignment:
Q  85 ttttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  35132406 ttttgacatgtttggatgttatcaattagaattgatttt 35132368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 43987693 - 43987648
Alignment:
Q  78 aaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||| |||||||||||||||||||||||  |||| ||||||||||    
T  43987693 aaattgattttgacatgtttggatgttcttgagtacaattgatttt 43987648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 48089887 - 48089854
Alignment:
Q  28 tatgtttgatttcacttttggaggagtcaaaatt 61  Q
    |||||||| |||||||||||||||||||||||||    
T  48089887 tatgtttgttttcacttttggaggagtcaaaatt 48089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 51965676 - 51965623
Alignment:
Q  23 tagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgta 76  Q
    ||||||||||||| ||||| |||| ||||||| ||||||| ||||||| |||||    
T  51965676 tagtgtatgtttggtttcatttttagaggagttaaaattgattctaaaagtgta 51965623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 25129718 - 25129638
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatg 102  Q
    |||||||||||||| ||||| |||| |||| |||||||||| ||||| ||||   | |||| |||||  ||||||||||||    
T  25129718 ttagtgtatgtttggtttcaattttcgaggggtcaaaattgattctagaggttgtagaattgattttatcatgtttggatg 25129638  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 54596761 - 54596805
Alignment:
Q  77 aaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    |||||| ||| |||||||||||| |||| ||||||||||||||||    
T  54596761 aaaattgattatgacatgtttggttgttttcaagtagaattgatt 54596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12525 - 12403
Alignment:
Q  1 aatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgga 100  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12525 aatttgagaaaatgaaagtgattactttatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttgga 12426  T
Q  101 tgttctcaagtagaattgatttt 123  Q
    |||||||||||||||||||||||    
T  12425 tgttctcaagtagaattgatttt 12403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 12341 - 12253
Alignment:
Q  122 ttccgcctcaaatttattgttcaactcactttcatcagaatcaaattttatacaattaatccattcaaaatcattttttgtctcacaaa 210  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12341 ttccgcctctaatttattgttcaactcactttcatcagaatcaaattttatacaatcaatccattcaaaatcattttttgtctcacaaa 12253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 29240646 - 29240548
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||| || ||||||||| ||| ||||||||| ||||| |||||| |||||| ||||||||||||| |||| || ||||||||||||||||||    
T  29240646 agtgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgt-aaaattgattttgacatgttaggatattttcaagtagaattgatttt 29240548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 6544695 - 6544595
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    |||||| ||||||| |||||| ||||||||||  ||||||| ||||| |||||||||| |||||||||||| | ||  ||||| ||||||| ||||||||    
T  6544695 ttagtgaatgtttggtttcacatttggaggaggaaaaattgattctataggtgtaaaa-tttattttgacaagctttaatgttttcaagtaaaattgatt 6544597  T
Q  122 tt 123  Q
    ||    
T  6544596 tt 6544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 33136677 - 33136579
Alignment:
Q  23 tagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgattt 122  Q
    |||||||| |||| |||||||||||||  || |||||||  ||||| ||||||| || || |||||||||||||||| || |||| |||| |||||||||    
T  33136677 tagtgtatatttggtttcacttttggaa-agccaaaattaattctagaggtgtataa-ttgattttgacatgtttggttgctctcgagtataattgattt 33136580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 34620793 - 34620851
Alignment:
Q  40 cacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 99  Q
    |||||||||||||  |||||||| |||||||||||| | |||| ||||||||||||||||    
T  34620793 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttgg 34620851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 34748230 - 34748288
Alignment:
Q  40 cacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 99  Q
    |||||||||||||  |||||||| |||||||||||| | |||| ||||||||||||||||    
T  34748230 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttgg 34748288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 25196070 - 25196026
Alignment:
Q  77 aaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    |||||||||||||| | |||||| || ||||||||||||||||||    
T  25196070 aaaatttattttgataggtttggttgctctcaagtagaattgatt 25196026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 26550464 - 26550508
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| |||||||||||||||| ||| ||||| |||||||||||||    
T  26550464 aattgattttgacatgtttggttgtactcaactagaattgatttt 26550508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 48290287 - 48290380
Alignment:
Q  29 atgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||||||||||||||||||||  |||||||| ||  | |||| |  ||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  48290287 atgtttgatttcacttttggaggatacaaaattgatttcataggt-tggaaattgattttgacatgtttggatgttttcaagcagaattgatttt 48290380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 45369112 - 45369151
Alignment:
Q  84 attttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  45369112 attttgagatgtttggatgttctcaagtagaattgatttt 45369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 12306626 - 12306723
Alignment:
Q  25 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||||||| |||| | |||||   |||| | | ||| ||||||| || || |||||||||||||||| || ||||||||||||||||||||    
T  12306626 gtgtatgtttgatttccctttagaaggagcataaatggatcctagaggtgtagaa-ttgattttgacatgtttggttgctctcaagtagaattgatttt 12306723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 33504599 - 33504562
Alignment:
Q  21 attagtgtatgtttgatttcacttttggaggagtcaaa 58  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  33504599 attagtgtatgtttgatttcacttttggaggaggcaaa 33504562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 15050184 - 15050281
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||| || |||||| ||||||| |||||||| ||||| | ||| || |||| |||||||| ||||||| |  ||||| ||||||||||||||    
T  15050184 agtgtatgtttggttccacttt-ggaggagccaaaattgattctagaagtg-aagaattgattttgacctgtttggttactctcatgtagaattgatttt 15050281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 27624939 - 27624979
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattg 62  Q
    ||||| |||||||| ||||||||||||||||| ||||||||    
T  27624939 ttagtttatgtttggtttcacttttggaggagacaaaattg 27624979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 29922783 - 29922883
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    |||||||||||||  || ||||||| ||||||||||||||| |||||   ||||| || || |||||||||||||||| ||||||| || ||||||||||    
T  29922783 ttagtgtatgtttacttccactttttgaggagtcaaaattgattctagtagtgtagaa-ttgattttgacatgtttggttgttctcgagcagaattgatt 29922881  T
Q  122 tt 123  Q
    ||    
T  29922882 tt 29922883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 38045392 - 38045438
Alignment:
Q  77 aaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  38045392 aaaattgattttgacatgtttgaatgttctcaagtagaattgatttt 38045438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 10898619 - 10898711
Alignment:
Q  30 tgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| |||||||||||||||||| ||||||||| ||||| || |||   |||| |||||||||||||||| || |||| |||| ||||||||||    
T  10898619 tgttcgatttcacttttggaggaatcaaaattgattctagagctgt-cgaattaattttgacatgtttggttgctctcgagtaaaattgatttt 10898711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 2938086 - 2938016
Alignment:
Q  25 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgt 95  Q
    ||||||||||| |||   ||||||||||| |||||||| ||||| ||| ||||||||| ||||||||||||    
T  2938086 gtgtatgtttggtttttattttggaggagccaaaattgattctagaggagtaaaaattgattttgacatgt 2938016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 1105384 - 1105428
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||    
T  1105384 aattgattttgacatttttggctgttctcaagtagaattgatttt 1105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 10860013 - 10859919
Alignment:
Q  26 tgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    |||||||||| || |||||||||| ||| |||||||  || || ||||||| ||||  |||||||| |||||| ||||||||  ||||||||||||    
T  10860013 tgtatgtttggttccacttttggaagaggcaaaattcattatagaggtgtagaaatg-attttgacctgtttgaatgttctcgggtagaattgatt 10859919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 12208983 - 12208944
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattg 118  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  12208983 aattgattttgacatgtttggatgttctcgagtagaattg 12208944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 6622174 - 6622243
Alignment:
Q  28 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttg 98  Q
    |||||||||||||| |||||||||||| ||||||  ||||||| |||| | |||||||| | |||||||||    
T  6622174 tatgtttgatttcatttttggaggagttaaaattaattctaaatgtgt-agaatttattctaacatgtttg 6622243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 11912005 - 11911905
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    |||| ||||||||| ||| | |||||| || |||||||||| ||||| || ||||||| || |||||||| ||||| | |||  | ||||||||||||||    
T  11912005 ttagagtatgtttggttttaattttggtggggtcaaaattgattctagagatgtaaaa-ttgattttgacttgtttagttgtgttaaagtagaattgatt 11911907  T
Q  122 tt 123  Q
    ||    
T  11911906 tt 11911905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 2973454 - 2973352
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaa---aatttattttgacatgtttggatgttctcaagtagaattgat 120  Q
    |||||||||||| || ||||||| |||||| |||||||| ||||||| || || |   |||| |||||||||| ||||| || ||||||| | |||| ||    
T  2973454 agtgtatgtttgcttccacttttagaggagccaaaattgattctaaaagtatagaattaattgattttgacatatttggttgctctcaagcataattaat 2973355  T
Q  121 ttt 123  Q
    |||    
T  2973354 ttt 2973352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 17862468 - 17862512
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| ||||| |||| |||| ||||||||||||||||||||||||    
T  17862468 aattaattttaacatatttgaatgttctcaagtagaattgatttt 17862512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 29922575 - 29922615
Alignment:
Q  83 tattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||||||||||||  ||||||| |||||||||||||||    
T  29922575 tattttgacatgtttgattgttctctagtagaattgatttt 29922615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 35139052 - 35139024
Alignment:
Q  128 ctcaaatttattgttcaactcactttcat 156  Q
    |||||||||||||||||||||||||||||    
T  35139052 ctcaaatttattgttcaactcactttcat 35139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 125
Target Start/End: Complemental strand, 32088763 - 32088667
Alignment:
Q  28 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgattttcc 125  Q
    ||||||||||| ||| ||||||| ||||||| ||  ||||  | |||||||| || |||||||||||||||| || ||||||||||||||||||||||    
T  32088763 tatgtttgattccacgtttggagcagtcaaagttaattctggacgtgtaaaa-ttgattttgacatgtttggttgctctcaagtagaattgattttcc 32088667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 18325281 - 18325187
Alignment:
Q  28 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||| || |||||||||||||| ||||| || ||| | | ||| || |||| |||||||||||||||||| ||||| |||||||||||||||    
T  18325281 tatgtttgtttccacttttggaggagacaaaagtgattccagatgtg-aagaattgattttgacatgtttggattttctcgagtagaattgatttt 18325187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 48635386 - 48635287
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||||||||  |  |||||||||||   |||||||| |||| |||||| | || || | | ||||||||||||||||||||||||||||||| ||||    
T  48635386 agtgtatgtttggatctacttttggagggtacaaaattgattctcaaggtgaagaatttgactatgacatgtttggatgttctcaagtagaattggtttt 48635287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 15452429 - 15452475
Alignment:
Q  77 aaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  15452429 aaaattgattttgacatctttggatgttctcgagtagaattgatttt 15452475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 6021695 - 6021793
Alignment:
Q  26 tgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgt--aaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||| || |||||||||||||||  |||||| ||||| ||||||  || |||| ||||||||| |||||  || | ||||||||||||||||||    
T  6021695 tgtatgtttggttccacttttggaggagt-taaattgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgatttt 6021793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 15478194 - 15478108
Alignment:
Q  25 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagta 112  Q
    ||||||||||| || |||||||||||||| |||| ||| || ||  |||||| || || |||||||||||||||| || |||||||||    
T  15478194 gtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaa-ttgattttgacatgtttggttgctctcaagta 15478108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 31375227 - 31375266
Alignment:
Q  114 aattgattttccgcctcaaatttattgttcaactcacttt 153  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  31375227 aattgattttcagcctcaaatttattgttcaactcgcttt 31375266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 8381892 - 8381949
Alignment:
Q  41 acttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 99  Q
    |||| ||||||||||||||||| ||||| |||| | |||||| ||||||||||||||||    
T  8381892 acttctggaggagtcaaaattgattctagaggtat-aaaattgattttgacatgtttgg 8381949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 41516883 - 41516976
Alignment:
Q  29 atgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||| || |||||||||||||||||||||   ||||| |||||| | |||| ||| |||||| || | ||||| || |||||||||||||||    
T  41516883 atgtttggttccacttttggaggagtcaaaatccattctagaggtgt-agaattgattatgacatcttggaatgttttcgagtagaattgatttt 41516976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 49079408 - 49079311
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgattt 122  Q
    ||||||||||||||| |||||||||||   ||||||| | ||| | ||||||| |  || |||||||||||||||| | ||||  ||||||||||||||    
T  49079408 agtgtatgtttgattccacttttggagtgctcaaaatcgattccagaggtgtagag-ttgattttgacatgtttggttcttctagagtagaattgattt 49079311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 51158554 - 51158510
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||||||| |||||||||||||||||   |||||||||||||    
T  51158554 aatttattttggcatgtttggatgttctcggatagaattgatttt 51158510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 41614735 - 41614833
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||| || || || || ||||| |||||||| ||||| |||| ||||| || |||||||| |||||||||| | ||||||||||||||||||    
T  41614735 agtgtatgtttggttccatttgtgtaggagccaaaattgattctagaggtataaaa-ttgattttgacttgtttggatggtttcaagtagaattgatttt 41614833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 39648340 - 39648265
Alignment:
Q  23 tagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 99  Q
    |||| |||||||| || ||||||| ||||||||||||||| ||||| || ||| | |||| ||||||||||||||||    
T  39648340 tagtatatgtttggttacacttttagaggagtcaaaattgattctagagatgt-ataattgattttgacatgtttgg 39648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 13929847 - 13929808
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattg 118  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  13929847 aattgattttgacatgtttggatgttctcgagtagaattg 13929808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 30251629 - 30251702
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttg 98  Q
    |||||||||||| || ||| |||||||||| |||||||| || || | |||| |||||||||||||| |||||||    
T  30251629 agtgtatgtttggttccacatttggaggagccaaaattgattttagatgtgt-aaaatttattttgatatgtttg 30251702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 36448006 - 36448087
Alignment:
Q  25 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctc 107  Q
    ||||||||||| || ||||||| ||| |||| |||||| ||||||| |||| | |||| |||||||||||||||  |||||||    
T  36448006 gtgtatgtttggttccactttttgagaagtctaaattgattctaaatgtgt-agaattcattttgacatgtttgattgttctc 36448087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 40880986 - 40881088
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaa-aatttattttgacatgtttggatgttctcaagtagaattgat 120  Q
    ||||| |||||||  ||||| |||||||||||  |||||||  | || |||| || | |||| ||||||||||||||| | ||||| |||||||||||||    
T  40880986 ttagtttatgtttagtttcatttttggaggaggtaaaattgactttagaggtatatagaattgattttgacatgtttgcaagttctaaagtagaattgat 40881085  T
Q  121 ttt 123  Q
    |||    
T  40881086 ttt 40881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 36448003 - 36447966
Alignment:
Q  86 tttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  36448003 tttgacatgtttggatgttctcgggtagaattgatttt 36447966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 11038076 - 11038155
Alignment:
Q  27 gtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctc 107  Q
    |||| |||| ||| |||||| || ||| |||||||| ||||| |||| || || || ||||||||||||||||||||||||    
T  11038076 gtatatttgttttaactttttgacgagacaaaattgattctagaggtatataa-ttgattttgacatgtttggatgttctc 11038155  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 34469247 - 34469291
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| |||||||||||||| |||||||||||||| |||| |||||    
T  34469247 aattgattttgacatgttttgatgttctcaagtataattaatttt 34469291  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 41138891 - 41138847
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||| |||||||||| |||| |||| |||||||||||    
T  41138891 aatttattttgatatgtttggatattctgaagtggaattgatttt 41138847  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 41037147 - 41037049
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||  ||||| ||||||||||| |||||||||| || ||||||| ||| || ||||| | || |||| ||||||||||||| |||| |||||    
T  41037147 agtgtatgtttactttcatttttggaggagacaaaattgttactgaaggtgt-aaacttgattttcatatatttgaatgttctcaagtaaaattaatttt 41037049  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 123
Target Start/End: Original strand, 37561599 - 37561695
Alignment:
Q  25 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    ||||||||||| ||||| ||||||| ||| |  ||||| ||||| |||||| |||||| ||||||||||||||| || | |||||||||| ||||||||    
T  37561599 gtgtatgtttggtttcaattttggatgaggcggaattgattctagaggtgt-aaaattgattttgacatgtttgaat-tcctcaagtagatttgatttt 37561695  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 7629751 - 7629827
Alignment:
Q  22 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 99  Q
    |||||||||||||| || |||||||||||||| ||| |||| ||||| |||||| | |||| |||||| |||||||||    
T  7629751 ttagtgtatgtttggttccacttttggaggagccaagattgattctagaggtgt-agaattgattttgtcatgtttgg 7629827  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 15221029 - 15220933
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    ||||||||||||||| |||||||| |||||  ||||||| ||||| || | | |||||| ||||||| ||| |||| || |||||| |||||||||||    
T  15221029 agtgtatgtttgattccacttttgaaggagggaaaattgattctagagatat-aaaattaattttgaaatgcttggttgctctcaaatagaattgatt 15220933  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 39702567 - 39702527
Alignment:
Q  84 attttgacatgtttggatgttctcaagtagaattgattttc 124  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  39702567 attttgacatgtttgtatgttctcgagtagaattgattttc 39702527  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 43717235 - 43717309
Alignment:
Q  26 tgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggat 101  Q
    |||| ||||| ||||||||||||||| || ||||||| ||||| | |||| | |||| ||||||||||||||||||    
T  43717235 tgtacgtttggtttcacttttggaggtgttaaaattgattctagatgtgt-agaattgattttgacatgtttggat 43717309  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 203
Target Start/End: Complemental strand, 38129509 - 38129420
Alignment:
Q  114 aattgattttccgcctcaaatttattgttcaactcactttca-tcagaatcaaattttatacaattaatccattcaaaatcattttttgtc 203  Q
    ||||||||||  ||||||||||||||||||| |||||||| | | ||||||  |||||| | ||| ||| |||||||||||| ||||||||    
T  38129509 aattgatttttagcctcaaatttattgttcatctcacttttagttagaatc-cattttacagaatcaattcattcaaaatcaatttttgtc 38129420  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 9943318 - 9943410
Alignment:
Q  28 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 121  Q
    |||||||| || ||| ||||||| |  |||||||| |||| ||||||||||| || ||||| |||||||||| || |||||  |||||||||||    
T  9943318 tatgtttggttccacatttggagcaaccaaaattgattctgaaggtgtaaaa-ttgattttaacatgtttggttgctctcacttagaattgatt 9943410  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 4778445 - 4778481
Alignment:
Q  25 gtgtatgtttgatttcacttttggaggagtcaaaatt 61  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  4778445 gtgtatgtttgatttcatttttgaaggagtcaaaatt 4778481  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 7630361 - 7630405
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| |||||||||||||||| || | ||||||||||||||||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgatttt 7630405  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 14577950 - 14577907
Alignment:
Q  53 gtcaaaattgtttctaaaggtgtaaaaatttattttgacatgttt 97  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  14577950 gtcaaaattgtttttaaaggtgt-aaaattaattttgacatgttt 14577907  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 50375644 - 50375572
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 99  Q
    |||||||||||||||  ||||||||| |||||||||||| || || ||||||| ||   |||||||||||||||||    
T  50375644 agtgtatgtttgattctacttttggatgagtcaaaattgattttagaggtgtataa---tattttgacatgtttgg 50375572  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 2635054 - 2635152
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||||||| |||||||||| ||||   |||||||| ||||| | |||| |||||| |||||||||||||||  || | | |||||||| |||||||    
T  2635054 agtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgt-aaaattgattttgacatgtttgattgcttttaagtagaactgatttt 2635152  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 41058821 - 41058915
Alignment:
Q  28 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||||||| || ||||||| || ||| | |||||| ||||||||| ||| || || ||| ||||||||||||||||| || |||| ||||||||||    
T  41058821 tatgtttggttccacttttagatgagcctaaattgattctaaaggagtagaa-ttgattgtgacatgtttggatgttttcgagtaaaattgatttt 41058915  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 29468829 - 29468736
Alignment:
Q  21 attagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaa 115  Q
    |||||||||||||| |||  ||| ||||||||   ||||||| || || ||||||| || ||  | |||||||||||||||||||||||||||||    
T  29468829 attagtgtatgtttaattcgactcttggaggaagaaaaattgattttacaggtgtagaa-ttagtattgacatgtttggatgttctcaagtagaa 29468736  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 37339363 - 37339309
Alignment:
Q  28 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatt 82  Q
    ||||||||||||||||||| |||| |||||||||  ||||| |||| ||||||||    
T  37339363 tatgtttgatttcacttttagaggggtcaaaatttattctagaggtataaaaatt 37339309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 47596490 - 47596440
Alignment:
Q  24 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtg 74  Q
    ||||||||| || |||||||||||||||| ||||||||| || ||||||||    
T  47596490 agtgtatgtatggtttcacttttggaggaatcaaaattgattttaaaggtg 47596440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 2171732 - 2171772
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattga 119  Q
    ||||| ||||||||||||||||||||||| |||| ||||||    
T  2171732 aatttcttttgacatgtttggatgttctcgagtaaaattga 2171772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 9082962 - 9082918
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||    
T  9082962 aattaattctgacatgtttggatgttctgaaatagaattgatttt 9082918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 22250171 - 22250215
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| ||| |||||||||||| ||||||||| |||||||||||||    
T  22250171 aattcattctgacatgtttggttgttctcaattagaattgatttt 22250215  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 25318992 - 25319036
Alignment:
Q  79 aatttattttgacatgtttggatgttctcaagtagaattgatttt 123  Q
    |||| |||||||||||||||| || |||| |||||||||||||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgatttt 25319036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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