View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_low_10 (Length: 442)
Name: NF17199_low_10
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 42258124 - 42258538
Alignment:
| Q |
12 |
cagcacagaagatgttaagagttgaggagtgattcttcaacaacgaattttttgttaacaaacttgttcctttttagttttctctttccttctctttagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258124 |
cagcacagaagatgttaagagttgaggagtgattcttcaacaacgaattttttgttaacaaacttgttcctttttagttttctctttccttctctttagc |
42258223 |
T |
|
| Q |
112 |
aaaatgcttgtccctgctttacatatggctgtggggttgaaacaaaatttattaaaactaatttgtttgctaaaggcctaaagtcacataccttaaagtc |
211 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258224 |
aaa-tgcttgtccctactttacatatggctgtggggttgaaacaaaatttattaaaactaatttgtttgctaaaggcctaaagtcacataccttaaagtc |
42258322 |
T |
|
| Q |
212 |
tttaaactgcttcaaataactgtttattgattctgatggtgcttataacagtttattgtaaagttaaagggaaattagcactgatttttatagtatag-- |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258323 |
tttaaactgcttcaaataactgtttattgattctgatggtgcttataacagtttattgtaaagttaaagggaaattagcactgatttttatagtatagtg |
42258422 |
T |
|
| Q |
310 |
--tatatatattattttgttaaagattatagtagcattaatttaaaggacaacatggtttgaaatgacaaaataacatcatagcagtaacagtttggtca |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42258423 |
tatatatatattattttgttaaagattatagtagcattaatttaaaggacaacatggtttgaaatgacaaaataacatcatagcagtgacagtttggtca |
42258522 |
T |
|
| Q |
408 |
atgaaattgttagctt |
423 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42258523 |
atgaaattgttagctt |
42258538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University