View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_13 (Length: 411)
Name: NF17199_low_13
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 1592963 - 1592709
Alignment:
| Q |
19 |
actgataaggtcccttcccattgataagaacacaatctggtattccaagg-cttttccaccatcaagtgttgatcttagagcctatatttatcaaacaaa |
117 |
Q |
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| T |
1592963 |
actgataaggtcccttcccattgataagaacaccatctggtattccaaggtcttttccaccgtcaagtgttgatcttagagcctatatttatcaaaaaaa |
1592864 |
T |
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| Q |
118 |
catacaaaatagcaattaaatatcaataaaaa--cacaacattttcaaaatttatagaagaaagttaaatgaaaggcaataactaaacgtgtagtcctga |
215 |
Q |
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| T |
1592863 |
catacaaaatagcaatcaaatatcaataaaaactcacaacatcttcagaatttacagaagaaagtctaatgaaaggtgataactaaccgtgtagtcctga |
1592764 |
T |
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| Q |
216 |
tt-----aat--ccaatcataatgaaaattttgccgtcgggctgcgcgaaaggaa |
263 |
Q |
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| T |
1592763 |
gtataccaatcaccaatcataatgaaaatttcaccgtcgggctgcgcgaaaggaa |
1592709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 6097834 - 6097967
Alignment:
| Q |
19 |
actgataaggtcccttcccattgataagaacacaatctggta---ttccaaggcttttccaccatcaagtgttgatcttagagcctatatttatcaaaca |
115 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6097834 |
actgataaggtc--ttcccattgataagaacacaatctggtactattccaaggcttttccaccatcaaatgttgatcttagagcctatatttatcaaaca |
6097931 |
T |
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| Q |
116 |
aacatacaaaatagcaattaaatatcaataaaaaca |
151 |
Q |
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| T |
6097932 |
aacatacaaaatagcaattaaatatcaataaaaaca |
6097967 |
T |
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