View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_low_16 (Length: 385)

Name: NF17199_low_16
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_low_16
NF17199_low_16
[»] chr4 (17 HSPs)
chr4 (11-353)||(7772845-7773201)
chr4 (11-239)||(7879029-7879246)
chr4 (16-253)||(7779120-7779345)
chr4 (23-155)||(7908959-7909091)
chr4 (183-251)||(45384085-45384153)
chr4 (142-251)||(7790813-7790924)
chr4 (49-128)||(37826289-37826368)
chr4 (192-251)||(49040384-49040444)
chr4 (287-350)||(50249783-50249844)
chr4 (182-246)||(7787475-7787540)
chr4 (183-251)||(45365274-45365343)
chr4 (168-251)||(48899530-48899615)
chr4 (287-350)||(37826024-37826088)
chr4 (171-246)||(50667113-50667188)
chr4 (192-251)||(50674655-50674715)
chr4 (52-102)||(45371393-45371443)
chr4 (53-106)||(7790764-7790817)
[»] chr3 (2 HSPs)
chr3 (55-126)||(11014798-11014869)
chr3 (53-126)||(11023804-11023877)
[»] chr7 (2 HSPs)
chr7 (53-129)||(48884534-48884610)
chr7 (287-315)||(48884815-48884843)
[»] chr2 (1 HSPs)
chr2 (71-126)||(29351124-29351179)
[»] chr8 (1 HSPs)
chr8 (71-126)||(4030092-4030147)
[»] chr1 (3 HSPs)
chr1 (183-241)||(24381868-24381927)
chr1 (202-249)||(24341215-24341263)
chr1 (202-249)||(24353580-24353628)
[»] chr5 (1 HSPs)
chr5 (49-126)||(29688812-29688889)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 353
Target Start/End: Complemental strand, 7773201 - 7772845
Alignment:
Q  11 cacagaaacaagaagaccgaggttgtgaaatattttcgaccattttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatgg 110  Q
    |||| |||||||||||||||  |||||||||||| || || |||||||||||| ||||  |||| ||||||||||||||||  | ||| ||||||| | |    
T  7773201 cacacaaacaagaagaccgacattgtgaaatattctcaactattttcttcataattataattatattgtattatgaactct--gatggttgcatttgtag 7773104  T
Q  111 ggtaatatgtgtttgactgtattggtaacctcatttgtatcatgagctattatgtaaatgagctgaaccattatgtcgtggaatgtttattggttaacta 210  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||    
T  7773103 ggcaatatgtgtttgactgtattggtaacctcatttgtaacatgagctattatgtaaatgagctgaatcattacgtcatggaatgtttattggttaatta 7773004  T
Q  211 tttgtcatatgctta-tggaaatattgacaactttgtttgtgatatgtaactcaatctgtcactgcttgaaattgtt------------ttaatctgatg 297  Q
    ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            |||||||||||    
T  7773003 tttgtcataggcttattggaaatattgacaactttgtttgtgatgtgtaactcaatctgtcactgcttgaaattgttttatatggtaaattaatctgatg 7772904  T
Q  298 agtttatacatgttgaagg---aaaataaagttttgttctctaatatcagtggacttgt 353  Q
    |||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  7772903 agtttatacatgttgaaggaaaaaaataaatttttgttctctaatatcagtggacttgt 7772845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 7879029 - 7879246
Alignment:
Q  11 cacagaaacaagaagaccgaggttgtgaaatattttcgaccattttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatgg 110  Q
    |||| ||||||||||||||| ||   |||||||| || |||||||||||||||||||| ||||||          || |||||||||||||||||| | |    
T  7879029 cacacaaacaagaagaccgacgt---gaaatattctcaaccattttcttcatatttatagttatg----------aattcttgggtggctgcatttgtag 7879115  T
Q  111 ggtaatatgtgtttgactgtattggtaacctcatttgtatcatgagctattatgtaaatgagctgaaccattatgtcgtggaatgtttattggttaact- 209  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| |||     
T  7879116 ggtaacatgtgttttactgtattggtaacctcatttgtaacatgagctattatgtaaatgaggtgaaccaatatgtcatggaatgtttactggttgacta 7879215  T
Q  210 atttgtcatatgctta-tggaaatattgaca 239  Q
    | ||||| |||||||| ||||||||||||||    
T  7879216 aattgtcgtatgcttattggaaatattgaca 7879246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 7779345 - 7779120
Alignment:
Q  16 aaacaagaagaccgaggttgtgaaatattttcgaccattttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaa 115  Q
    |||||||||||||||||||||| |||||| || ||||||||||||||| ||||  |||| ||||||||||||||            ||||| | || |||    
T  7779345 aaacaagaagaccgaggttgtggaatattctcaaccattttcttcataattataattatattgtattatgaactt-----------catttgtaggttaa 7779257  T
Q  116 tatgtgtttgactgtattggtaacctcatttgtatcatgagctattatgtaaatgagctgaaccattatgtcgtggaatgtttattggttaactatttgt 215  Q
    |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| ||| |   ||| || ||||||||||||||||| |||||||||    
T  7779256 tatgtgtttgcctgtattggtaacctcatttgtaacatgagctagtatgtaaatgagttgacctgatatatcatggaatgtttattggttgactatttgt 7779157  T
Q  216 catatgctta-tggaaatattgacaactttgtttgtgat 253  Q
      |||||||| ||||||||||||||||||| ||||||||    
T  7779156 --tatgcttattggaaatattgacaactttctttgtgat 7779120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 7908959 - 7909091
Alignment:
Q  23 aagaccgaggttgtgaaatattttcgaccattttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgt 122  Q
    ||||| |||||||||||||||| || || |||||||||||||||||  |||| ||||||| ||||||||||||||| ||||||| | ||||| ||| |||    
T  7908959 aagactgaggttgtgaaatattctcaacgattttcttcatatttataattatattgtattttgaactcttgggtggttgcatttttagggtagtatatgt 7909058  T
Q  123 ttgactgtattggtaacctcatttgtatcatga 155  Q
    |||||||||||||||||  |||||||| |||||    
T  7909059 ttgactgtattggtaactgcatttgtaacatga 7909091  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 45384153 - 45384085
Alignment:
Q  183 atgtcgtggaatgtttattggttaactatttgtcatatgcttatggaaatattgacaactttgtttgtg 251  Q
    ||||| || ||||| ||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||    
T  45384153 atgtcatgcaatgtctattggttaacaatttgtaatatgcttattgaaatattgacaactctgtttgtg 45384085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 7790813 - 7790924
Alignment:
Q  142 catttgtatcatgagctattatgtaa-atgagctgaaccattatgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaatattgaca 239  Q
    |||||||| ||||||||| ||||||| ||||||||||||   || || || | | ||||||||||||| ||||||||||||| || |||||||||||||     
T  7790813 catttgtaacatgagctagtatgtaacatgagctgaacccacatttcatgaagtatttattggttaacgatttgtcatatgcatattggaaatattgact 7790912  T
Q  240 actttgtttgtg 251  Q
     |||||||||||    
T  7790913 gctttgtttgtg 7790924  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 37826368 - 37826289
Alignment:
Q  49 accattttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgtttgact 128  Q
    ||||||||||| ||||||    |||| |||||||||||||||||||||| ||| |||| | |||||||||||||||||||    
T  37826368 accattttcttgatattttcaattatattgtattatgaactcttgggtgtctggatttgtagggtaatatgtgtttgact 37826289  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 49040444 - 49040384
Alignment:
Q  192 aatgtttattggttaactatttgtcatatgctta-tggaaatattgacaactttgtttgtg 251  Q
    ||||| |||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||    
T  49040444 aatgtatattggttaactatctgtaatatgcttattggtaatattgacaactttgtttgtg 49040384  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 50249844 - 50249783
Alignment:
Q  287 ttaatctgatgagtttatacatgttgaaggaaaataaagttttgttctctaatatcagtggact 350  Q
    |||||||||||||||||| ||| ||||||||||  || ||||||||||||||| ||||||||||    
T  50249844 ttaatctgatgagtttatgcatattgaaggaaa--aaggttttgttctctaatttcagtggact 50249783  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 7787475 - 7787540
Alignment:
Q  182 tatgtcgtggaatgtttattggttaactatttgtcatatgcttat-ggaaatattgacaactttgt 246  Q
    |||||| || |||||||||| ||| ||| |||||||||||||||| | ||||||||||||||||||    
T  7787475 tatgtcatgaaatgtttattcgtttactgtttgtcatatgcttatcgaaaatattgacaactttgt 7787540  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 45365343 - 45365274
Alignment:
Q  183 atgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaatattgacaactttgtttgtg 251  Q
    ||||| || ||||||||||||||||| |||||| ||||||||| |||||| ||||| | |||||||||||    
T  45365343 atgtcatgcaatgtttattggttaacaatttgtaatatgcttattggaaacattgatatctttgtttgtg 45365274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 48899530 - 48899615
Alignment:
Q  168 atgagctgaaccattatgtcgtggaatgtttattggttaacta-tttgtcatatgctta-tggaaatattgacaactttgtttgtg 251  Q
    ||||||||| ||| |||||| || ||||||||||| || |||| ||||  ||||||||| |||||||||||||| |||||||||||    
T  48899530 atgagctgatccaatatgtcatgaaatgtttattgtttcactattttgcaatatgcttattggaaatattgacagctttgtttgtg 48899615  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 350
Target Start/End: Complemental strand, 37826088 - 37826024
Alignment:
Q  287 ttaatctgatgagtttatacatgttgaaggaaaa-taaagttttgttctctaatatcagtggact 350  Q
    ||||| ||||||| |||| ||| ||||||||||| ||| ||||||||||||||| ||||||||||    
T  37826088 ttaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatttcagtggact 37826024  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 50667113 - 50667188
Alignment:
Q  171 agctgaaccattatgtcgtggaatgtttattggttaactatttgtcatatgcttatgga-aatattgacaactttgt 246  Q
    |||||| |||||||||| || ||  |||||||||||||| ||||| |||||||||| || |||||||||||||||||    
T  50667113 agctgatccattatgtcatgaaacatttattggttaact-tttgtaatatgcttattgagaatattgacaactttgt 50667188  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 50674655 - 50674715
Alignment:
Q  192 aatgtttattggttaactatttgtcatatgcttat-ggaaatattgacaactttgtttgtg 251  Q
    |||||||||| |||||||| |||  |||||||||| ||||||||||||| |||||||||||    
T  50674655 aatgtttatttgttaactagttgcaatatgcttattggaaatattgacagctttgtttgtg 50674715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 45371443 - 45371393
Alignment:
Q  52 attttcttcatatttatggttatgttgtattatgaactcttgggtggctgc 102  Q
    |||||||| | ||||||  ||||||||||||||| ||||||||||||||||    
T  45371443 attttcttgaaatttataattatgttgtattatgtactcttgggtggctgc 45371393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7790764 - 7790817
Alignment:
Q  53 ttttcttcatatttatggttatgttgtattatgaactcttgggtggctgcattt 106  Q
    ||||||| ||||||||  |||| |||| ||||| ||||||||||||||||||||    
T  7790764 ttttctttatatttataattatattgttttatgtactcttgggtggctgcattt 7790817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 11014869 - 11014798
Alignment:
Q  55 ttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgtttga 126  Q
    ||||| ||||||||  |||| || |||||| ||||||||||||||||||||| | |||||||||||||||||    
T  11014869 ttcttgatatttataattatattatattataaactcttgggtggctgcatttgttgggtaatatgtgtttga 11014798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 11023877 - 11023804
Alignment:
Q  53 ttttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgtttga 126  Q
    ||||||| ||||||||  ||||  |||||||| ||||||||||| |||||| ||   |||||||||||||||||    
T  11023877 ttttcttaatatttataattatagtgtattataaactcttgggtagctgcacttgccgggtaatatgtgtttga 11023804  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 48884534 - 48884610
Alignment:
Q  53 ttttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgtttgactg 129  Q
    ||||||| ||||||||   ||| ||| ||||||||||||| ||||||||||||| | | ||||||||||||||||||    
T  48884534 ttttcttgatatttataactatattgcattatgaactctttggtggctgcatttgtagagtaatatgtgtttgactg 48884610  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 315
Target Start/End: Original strand, 48884815 - 48884843
Alignment:
Q  287 ttaatctgatgagtttatacatgttgaag 315  Q
    |||||||||||||||||||||||||||||    
T  48884815 ttaatctgatgagtttatacatgttgaag 48884843  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 29351124 - 29351179
Alignment:
Q  71 ttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgtttga 126  Q
    |||| ||||||||||||||||||||||| ||||||| | ||||| |||||||||||    
T  29351124 ttatattgtattatgaactcttgggtggttgcatttgtagggtactatgtgtttga 29351179  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 4030147 - 4030092
Alignment:
Q  71 ttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgtttga 126  Q
    |||| |||||||||||||||||||| || ||||||| | ||||| |||||||||||    
T  4030147 ttatattgtattatgaactcttgggcggttgcatttgtagggtactatgtgtttga 4030092  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 24381868 - 24381927
Alignment:
Q  183 atgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaatattgacaac 241  Q
    ||||| || |||||||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  24381868 atgtcatgaaatgtttattggttaactatttgtaacatgtttattggaaatattgacaac 24381927  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 24341215 - 24341263
Alignment:
Q  202 ggttaactatttgtcatatgcttat-ggaaatattgacaactttgtttg 249  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||    
T  24341215 ggttaactatttgtaatatgtttattggaaatattaacaactttgtttg 24341263  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 249
Target Start/End: Original strand, 24353580 - 24353628
Alignment:
Q  202 ggttaactatttgtcatatgcttat-ggaaatattgacaactttgtttg 249  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||    
T  24353580 ggttaactatttgtaatatgtttattggaaatattaacaactttgtttg 24353628  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 29688812 - 29688889
Alignment:
Q  49 accattttcttcatatttatggttatgttgtattatgaactcttgggtggctgcatttatggggtaatatgtgtttga 126  Q
    ||||||||| | || |||||  |||| | |||||||| ||||||| |||||||||||  | |||||||||||||||||    
T  29688812 accattttcatgatctttataattatatagtattatgtactcttgagtggctgcattcgtagggtaatatgtgtttga 29688889  T

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