View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17199_low_18 (Length: 357)
Name: NF17199_low_18
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_18 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 110 - 357
Target Start/End: Original strand, 47988320 - 47988572
Alignment:
| Q |
110 |
gaaaaaatttcactacatgaaatgtttggcacccccaattttaaatcctcggctccaccttctagtttgagatgatggcacaggcaagcatcaaacatgt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47988320 |
gaaaaaatttcactacatgaaatgtttggcacccccaattttaaatcctcgactccaccttctagtttgagatgatggcacaggcaagcatcaaacatgt |
47988419 |
T |
|
| Q |
210 |
gagatgagaacaaatggataaagttaatatgggtggtnnnnnnncaagaaattaaacttc-----aaagggcaaatattggtggatgataggaccacaac |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
47988420 |
gagatgagaacaaatggataaagttaatatgggtggtaaaaaaacaagaaattaaacttcaaattaaagggcaaatattggtggatgataggatcacaac |
47988519 |
T |
|
| Q |
305 |
tcatgtttaccctagaaagagatagcaagggtagaaattaaaaatggcattac |
357 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47988520 |
tcatgtttatcctagaaagagatagcaagggtagaaattaaaaatggcattac |
47988572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 47988230 - 47988290
Alignment:
| Q |
20 |
cctaatcataatttgtgtgcggacagttaacaccacctatctgacccttactatattcctt |
80 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47988230 |
cctaatcataatttgtgtgcggacagttaacaccacctatctgacccttactatattcctt |
47988290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 49546539 - 49546595
Alignment:
| Q |
280 |
tattggtggatgataggaccacaactcatgtttaccctagaaagagatagcaagggt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
49546539 |
tattggtggatgataggaccacaactcatgtttattctagaaagatatagcaagggt |
49546595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 313
Target Start/End: Complemental strand, 47872734 - 47872688
Alignment:
| Q |
266 |
cttcaaagggcaaatattggtggatgataggaccacaactcatgttta |
313 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
47872734 |
cttcaaagggcca-tattggtggatgataggaccacaactcatgttta |
47872688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 49443608 - 49443667
Alignment:
| Q |
278 |
aatattggtggatgataggacca--caactcatgtttaccctagaaagagatagcaaggg |
335 |
Q |
| |
|
||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
49443608 |
aatattgatggatgataggactatacaactcatgtttattctagaaagagatagcaaggg |
49443667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 332
Target Start/End: Complemental strand, 14962141 - 14962076
Alignment:
| Q |
266 |
cttcaaagggcaaatattggtggatgataggaccacaactcatgtttaccctagaaagagatagcaa |
332 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||| ||||| | ||||||||||||||| |
|
|
| T |
14962141 |
cttcaaagggcaa-tattggtggatgataggaccacaggtcaagtttattccagaaagagatagcaa |
14962076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 43157543 - 43157605
Alignment:
| Q |
266 |
cttcaaagggcaaatattggtggatgataggaccacaactcatgtttaccctagaaagagatag |
329 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| |||| |||||||||| ||| |||||||||| |
|
|
| T |
43157543 |
cttcaaagggcaa-tattggtggttgataggaacacacctcatgtttattctacaaagagatag |
43157605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 31265162 - 31265108
Alignment:
| Q |
281 |
attggtggatgataggaccacaactcatgtttaccctagaaagagatagcaaggg |
335 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||| ||||||||||| |||| |
|
|
| T |
31265162 |
attggtagatgataggaccacacctcatgtttattctacaaagagatagcgaggg |
31265108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University