View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17199_low_19 (Length: 356)

Name: NF17199_low_19
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17199_low_19
NF17199_low_19
[»] chr1 (7 HSPs)
chr1 (18-248)||(27686987-27687217)
chr1 (294-336)||(9608822-9608864)
chr1 (295-337)||(31480023-31480065)
chr1 (294-337)||(5304718-5304761)
chr1 (294-340)||(49425873-49425919)
chr1 (295-332)||(2362514-2362551)
chr1 (293-337)||(48872838-48872882)
[»] chr4 (7 HSPs)
chr4 (294-340)||(30973720-30973766)
chr4 (293-337)||(48372112-48372156)
chr4 (295-337)||(1580171-1580213)
chr4 (295-332)||(38952834-38952871)
chr4 (293-337)||(31240789-31240833)
chr4 (293-337)||(36792473-36792517)
chr4 (297-337)||(47134729-47134769)
[»] chr5 (5 HSPs)
chr5 (293-337)||(5130264-5130308)
chr5 (295-337)||(16202861-16202903)
chr5 (295-337)||(40223674-40223716)
chr5 (301-337)||(4434611-4434647)
chr5 (293-337)||(13613850-13613894)
[»] scaffold0449 (1 HSPs)
scaffold0449 (293-333)||(7975-8015)
[»] scaffold0001 (1 HSPs)
scaffold0001 (293-337)||(396002-396046)
[»] chr2 (5 HSPs)
chr2 (293-340)||(26321584-26321631)
chr2 (293-332)||(3091886-3091925)
chr2 (293-332)||(36133119-36133158)
chr2 (296-333)||(9202406-9202443)
chr2 (293-337)||(16577607-16577651)
[»] scaffold0204 (1 HSPs)
scaffold0204 (293-337)||(27480-27524)
[»] chr8 (4 HSPs)
chr8 (293-337)||(42768008-42768052)
chr8 (294-332)||(21273598-21273636)
chr8 (295-337)||(37101574-37101616)
chr8 (295-332)||(9046960-9046997)
[»] chr3 (3 HSPs)
chr3 (293-337)||(108570-108614)
chr3 (295-333)||(32457642-32457680)
chr3 (293-327)||(55344182-55344216)
[»] chr7 (6 HSPs)
chr7 (293-332)||(43445552-43445591)
chr7 (295-337)||(40717127-40717169)
chr7 (296-337)||(36990180-36990221)
chr7 (296-332)||(21839023-21839059)
chr7 (293-333)||(34348914-34348954)
chr7 (293-333)||(43657146-43657186)
[»] chr6 (4 HSPs)
chr6 (294-333)||(1434564-1434603)
chr6 (293-340)||(10521260-10521307)
chr6 (294-337)||(25166765-25166808)
chr6 (295-332)||(32853033-32853070)
[»] scaffold0018 (1 HSPs)
scaffold0018 (293-337)||(36142-36186)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 27686987 - 27687217
Alignment:
Q  18 gtattacatttaattagacttaatttggagggtcagttgaattatgtcattctgtttttcccaatgcaactacttttcttgttactatttaatgacaaga 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27686987 gtattacacttaattagacttaatttggagggtcagttgaattatgtcattctgtttttcccaatgcaactacttttcttgttactatttaatgacaaga 27687086  T
Q  118 aagcctttaagcttggagggatcgagaattactcttagacaagataacggcatgcagaagagggtagttggggtgtcttaaatgtggctcaaaattgtga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27687087 aagcctttaagcttggagggatcgagaattactcttagacaagataacggcatgcagaagagggtagttggggtgtcttaaatgtggctcaaaattgtga 27687186  T
Q  218 tattgagattggattgcatggccctttcatc 248  Q
    |||||||||||||||||||||||||||||||    
T  27687187 tattgagattggattgcatggccctttcatc 27687217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 336
Target Start/End: Complemental strand, 9608864 - 9608822
Alignment:
Q  294 agagtagtgatatttgaacaattatttcatacaattttttgtg 336  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  9608864 agagtagtgatatttgaataatcatttcatacaattttttgtg 9608822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 31480023 - 31480065
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  31480023 gagtagtgatatttgaacaactatttcatacaatttttggtga 31480065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 337
Target Start/End: Original strand, 5304718 - 5304761
Alignment:
Q  294 agagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||||||||||||||||||||  |||||||||||||||| ||||    
T  5304718 agagtagtgatatttgaacaaccatttcatacaatttttggtga 5304761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 49425919 - 49425873
Alignment:
Q  294 agagtagtgatatttgaacaattatttcatacaattttttgtgataa 340  Q
    |||||||||||||||||||||  ||||||||||| |||| |||||||    
T  49425919 agagtagtgatatttgaacaaccatttcatacaacttttggtgataa 49425873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 2362551 - 2362514
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttt 332  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2362551 gagtagtgatatttgaacaactatttgatacaattttt 2362514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 48872838 - 48872882
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||  ||||||||||| |||| ||||    
T  48872838 aagagtagtgatatttgaacaaccatttcatacaacttttggtga 48872882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 30973766 - 30973720
Alignment:
Q  294 agagtagtgatatttgaacaattatttcatacaattttttgtgataa 340  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  30973766 agagtagtgatatttgaacaactatttcatacaattttttgtgataa 30973720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 48372112 - 48372156
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||    
T  48372112 aagagtagtgatatttgaacaactatttcatacaatttttagtga 48372156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 1580171 - 1580213
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  1580171 gagtagtgatatttgaacaaccatttcatacaactttttgtga 1580213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 38952871 - 38952834
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttt 332  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  38952871 gagtagtgatatttaaacaattatttgatacaattttt 38952834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 31240833 - 31240789
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||  ||||||||||| |||| ||||    
T  31240833 aagagtagtgatatttgaacaaccatttcatacaacttttggtga 31240789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 36792517 - 36792473
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||  ||||||||||| |||| ||||    
T  36792517 aagagtagtgatatttgaacaaccatttcatacaacttttggtga 36792473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 47134729 - 47134769
Alignment:
Q  297 gtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||||||||||||||||| ||||||||| ||||||| ||||    
T  47134729 gtagtgatatttgaacaactatttcatataatttttcgtga 47134769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 5130264 - 5130308
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  5130264 aagagtagtgatatttgaacaactatttcatacaattttttgtga 5130308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Complemental strand, 16202903 - 16202861
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||    
T  16202903 gagtagtgatatttgaacaatcatttcatacaacttttagtga 16202861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 40223674 - 40223716
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||  |||||||||||||||| ||||    
T  40223674 gagtagtgatatttgaacaaccatttcatacaatttttggtga 40223716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 4434647 - 4434611
Alignment:
Q  301 tgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  4434647 tgatatttgaacaattatttcatacaacttttggtga 4434611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 13613850 - 13613894
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||| |||||||||||||||||| ||||||||||| |||| ||||    
T  13613850 aagaatagtgatatttgaacaatcatttcatacaacttttggtga 13613894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 8015 - 7975
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaatttttt 333  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  8015 aagagtagtgatatttgaacaattatttgatacaatttttt 7975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 396046 - 396002
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  396046 aagagtagtgatatttgaacaaccatttcatacaattttttgtga 396002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 26321584 - 26321631
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtgataa 340  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||    
T  26321584 aagagtagtgatatttgaacaatcatttcatacaacttttggtgataa 26321631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 3091925 - 3091886
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttt 332  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  3091925 aagagtagtgatatttgaacaattatttgatacaactttt 3091886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 36133158 - 36133119
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttt 332  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  36133158 aagagtagtgatatttgaacaactatttcatacaactttt 36133119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 9202406 - 9202443
Alignment:
Q  296 agtagtgatatttgaacaattatttcatacaatttttt 333  Q
    |||||||||||||||||||  |||||||||||||||||    
T  9202406 agtagtgatatttgaacaaccatttcatacaatttttt 9202443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 16577651 - 16577607
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||    
T  16577651 aagagtaatgatatttgaataaccatttcatacaattttttgtga 16577607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 27524 - 27480
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  27524 aagagtagtgatatttgaacaaccatttcatacaatttttagtga 27480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Original strand, 42768008 - 42768052
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||    
T  42768008 aagagtagtgatatttgaacaaacatttcatacaatttttagtga 42768052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 21273598 - 21273636
Alignment:
Q  294 agagtagtgatatttgaacaattatttcatacaattttt 332  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  21273598 agagtagtgatatttgaacaactatttcatacaactttt 21273636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 37101574 - 37101616
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||  |||||||||||||||| ||||    
T  37101574 gagtagtgatatttgaacaaccatttcatacaatttttcgtga 37101616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 9046960 - 9046997
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttt 332  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  9046960 gagtagtgatatttgaacaactatttgatacaattttt 9046997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 108614 - 108570
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||||||||||||||||||||| |||||||||||| |||| ||||    
T  108614 aagagtagtgatatttgaacaactatttcatacaacttttggtga 108570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 32457642 - 32457680
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaatttttt 333  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  32457642 gagtagtgatatttgaacaactatttgatacaatttttt 32457680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 55344182 - 55344216
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaa 327  Q
    |||||||||||||||||||||| ||||||||||||    
T  55344182 aagagtagtgatatttgaacaactatttcatacaa 55344216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 43445591 - 43445552
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttt 332  Q
    ||||||||||||||||||||||| |||| |||||||||||    
T  43445591 aagagtagtgatatttgaacaatcatttgatacaattttt 43445552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 40717127 - 40717169
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||  ||||||||||| |||||||||    
T  40717127 gagtagtgatatttgaacaaccatttcatacaactttttgtga 40717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 36990221 - 36990180
Alignment:
Q  296 agtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    |||||||||||||||||||  |||||||| ||||||||||||    
T  36990221 agtagtgatatttgaacaaccatttcatataattttttgtga 36990180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 21839023 - 21839059
Alignment:
Q  296 agtagtgatatttgaacaattatttcatacaattttt 332  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  21839023 agtagtgatatttgaacaactatttgatacaattttt 21839059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 34348914 - 34348954
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaatttttt 333  Q
    |||||||||||||||||||||  |||||||||||| |||||    
T  34348914 aagagtagtgatatttgaacatctatttcatacaacttttt 34348954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 43657186 - 43657146
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaatttttt 333  Q
    ||||||||||||||||||||||  ||||||||||| |||||    
T  43657186 aagagtagtgatatttgaacaaccatttcatacaacttttt 43657146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 1434564 - 1434603
Alignment:
Q  294 agagtagtgatatttgaacaattatttcatacaatttttt 333  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  1434564 agagtagtgatatttgaacaactatttgatacaatttttt 1434603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 10521307 - 10521260
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtgataa 340  Q
    |||||||||||||||||||||| ||||| ||| ||||||| |||||||    
T  10521307 aagagtagtgatatttgaacaactattttatataatttttggtgataa 10521260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 25166808 - 25166765
Alignment:
Q  294 agagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||| |||||  |||||||||||||||||||||    
T  25166808 agagtagtgatatttaaacaaccatttcatacaattttttgtga 25166765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 32853033 - 32853070
Alignment:
Q  295 gagtagtgatatttgaacaattatttcatacaattttt 332  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  32853033 gagtagtgatatttgaacaactatttgatacaattttt 32853070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 36186 - 36142
Alignment:
Q  293 aagagtagtgatatttgaacaattatttcatacaattttttgtga 337  Q
    ||||||||||||||||||||||  |||| |||||| |||||||||    
T  36186 aagagtagtgatatttgaacaaccatttgatacaactttttgtga 36142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University