View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17199_low_2 (Length: 633)
Name: NF17199_low_2
Description: NF17199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17199_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 11 - 615
Target Start/End: Original strand, 18036548 - 18037154
Alignment:
| Q |
11 |
cagagaacaatctcactttagaagttggttccaattggcatcctagttttcagctatacgaattgggaatgagctcgtggcaaatcggccataactttcc |
110 |
Q |
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| T |
18036548 |
cagagaacaatctcactttagaagttggttccaattggcatcctagttttcagctatacgaattgggaatgagctcgtggcaaatcggccataactttcc |
18036647 |
T |
|
| Q |
111 |
gtcgtggattcaaactcaaaaggatcttcattctttggacatatctaatacaggtataacagatttcatcccactttggttttgggaaacattttctaat |
210 |
Q |
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| T |
18036648 |
gtcgtggattcaaactcaaaaggatcttcattatttggacatatctaatacaggtataacagatttcataccactttggttttgggaaacattttctaat |
18036747 |
T |
|
| Q |
211 |
gctttttatttgaacttctctca--atcatatacacggtgagattgtgagttcattaacaaagtcgatatctatcaagaccattgatctaagctcgaatc |
308 |
Q |
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| T |
18036748 |
gctttttatttgaacttctctcataatcatattcacggtgagattgtgagttcattaacaaagtcgatatctatcaagaccattgatctaagctcgaatc |
18036847 |
T |
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| Q |
309 |
acttacatggaaagttaccctatctttttaacgattctttgtcttggttggatctttcaaataattcattttctggatgccttactgaatttctatgtaa |
408 |
Q |
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| T |
18036848 |
acttacatggaaagttaccctatctttttaatgattctttgtcttggttggatctttcaaataattcattttctggatcccttactgaatttctatgtaa |
18036947 |
T |
|
| Q |
409 |
tagacaaaacaagccaatgcaatcaacatttctcaatcttgcatcaaatagtttatcaggtgaaatacctgattgttggacaatgtggcctaatctagtt |
508 |
Q |
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|||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18036948 |
tagacaaagcaagccaatgcaatcatcctttctcaatcttgcatcaaatagtttatcaggtgaaatacctgattgttggacaatgtggcctaatctagtt |
18037047 |
T |
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| Q |
509 |
gatttaaatttacaaaacaataattttgttggaaatttacccttttccatgtcttctttaaccgatttacaaacattgcatatccgtaagaactcactct |
608 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18037048 |
gatttaaatttacaaaacaatcattttgttggaaatttacccttttccatgtcttctttaaccgagctacaaacattgcatatccgtaagaactcactct |
18037147 |
T |
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| Q |
609 |
caggaat |
615 |
Q |
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| T |
18037148 |
caggaat |
18037154 |
T |
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